Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z198 > ZS312 > Z262 > M167 > Z264 > Z205 > ~22224168-A-C > Z206/S235 > Z208/S362 > Z207/S251 > FGC35927 > FGC35932

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
16728
19827629-C-CT 17715749-C-CT P5_Prx A*
20040646-A-C 17928766-A-C P5_Prx A*
22512881-G-A 20350995-G-A BY225935 DYZ19 +
22470027-G-A 20308141-G-A BY222333 DYZ19 +
22465977-G-T 20304091-G-T BY221642 DYZ19 +
21859833-G-A 19697947-G-A BY159074 YY+
7069458-G-A 7201417-G-A BY160598 YY+
20808645-C-T 18646759-C-T BY212435 P4_Gap +
7418051-G-C 7550010-G-C BY160547 YY+
14169758-G-A 12049052-G-A BY160104 YY+
19517607-C-T 17405727-C-T BY159226 Y+
16648803-T-C 14536923-T-C BY159747 YY+
8230943-G-C 8362902-G-C BY160413 YY+
19005539-A-T 16893659-A-T BY159333 YY+
18905707-C-T 16793827-C-T FGC33155 YY+
8762822-G-T 8894781-G-T BY160291 YY+
18387214-C-T 16275334-C-T BY159428 P6_Gap +
22568058-G-A 20406172-G-A BY158970 YY+
22478686-G-A 20316800-G-A BY224076 DYZ19 +
23097758-G-A 20935872-G-A BY158872 YY+
23738583-G-A 21576697-G-A +
2800337-T-C 2932296-T-C BY160721 YY+
13672284-G-T 11516608-G-T +
23317557-G-T 21155671-G-T BY158828 YY+
9005878-TAC-T 9168269-TAC-T *
22318208-G-T 20156322-G-T DYZ19 *
22254694-G-C 20092808-G-C DYZ19 *
22300341-G-C 20138455-G-C DYZ19 *
22432786-A-T 20270900-A-T DYZ19 *
10872282-A-T **
10770687-C-A **
10658663-C-A **
10664625-C-T **
10872304-T-TA **
10026156-A-C 10188547-A-C **
10872306-AG-A **
10768037-G-T **
10759830-C-G **
9951786-G-T 10114177-G-T **
10664247-T-G **
10759553-A-C **
10759547-T-C **
10685831-C-A **
10759546-T-A **
10664639-CCATT-C **
10669451-T-TACCC **
10757857-C-A **
10686714-T-A **
10664663-T-A **
10664665-C-A **
10751999-G-T **
10750140-C-A **
9930263-C-G 10092654-C-G **
10669432-TC-T **
10669440-A-ACTT **
10669441-T-TAC **
10669450-A-AC **
10664662-C-G **
56850397-G-A **
9666520-G-T 9828911-G-T IR3_Prx **
3995267-CT-C 4127226-CT-C **
22361473-T-G 20199587-T-G DYZ19 **
18984021-C-A 16872141-C-A **
22215265-C-A 20053379-C-A **
10940408-T-TTCTAC **
16624653-A-G 14512773-A-G **
2682763-T-C 2814722-T-C **
3015809-AAT-A 3147768-AAT-A **
3042828-C-T 3174787-C-T **
3570462-C-A 3702421-C-A **
3605156-T-G 3737115-T-G **
3629615-G-T 3761574-G-T **
3640473-T-G 3772432-T-G **
3797391-C-A 3929350-C-A **
3923341-C-A 4055300-C-A **
4215738-G-A 4347697-G-A **
9125517-G-A **
4281171-G-T 4413130-G-T **
5214051-T-G 5346010-T-G **
5449899-G-C 5581858-G-C **
5484243-G-T 5616202-G-T **
5845953-G-T 5977912-G-T **
6209038-A-AAT 6340997-A-AAT IR3_Dst **
6368463-A-G 6500422-A-G **
7108865-T-G 7240824-T-G **
7231147-G-T 7363106-G-T **
7311556-T-G 7443515-T-G **
10883173-C-A **
7986133-C-A 8118092-C-A **
8713699-G-T 8845658-G-T **
9120406-G-T **
10880846-T-G **
13640137-C-A 11484461-C-A **
10940420-C-G **
22517241-C-A 20355355-C-A **
19253324-T-G 17141444-T-G **
19299549-C-A 17187669-C-A **
19617826-A-T 17505946-A-T P5_Prx **
20280148-C-T 18118262-C-T P5_Dst **
20886863-T-TAAAA 18724977-T-TAAAA P4_Dst 26×A**
21668739-G-A 19506853-G-A **
21856686-A-C 19694800-A-C **
22173051-T-G 20011165-T-G **
22240931-A-G 20079045-A-G DYZ19 **
22502949-T-G 20341063-T-G DYZ19 **
22502980-G-T 20341094-G-T DYZ19 **
22502989-G-A 20341103-G-A DYZ19 **
22503017-G-C 20341131-G-C DYZ19 **
22503047-A-G 20341161-A-G DYZ19 **
23052516-C-T 20890630-C-T **
18454988-T-A 16343108-T-A P6_Dst **
28724255-CA-C 26578108-CA-C **
56850370-T-A **
56837957-T-C **
28815186-A-T 26669039-A-T **
28724333-C-CCAT 26578186-C-CCAT **
28724323-CCCG-C 26578176-CCCG-C **
28724267-C-G 26578120-C-G **
28482848-C-A 26336701-C-A **
23137450-C-A 20975564-C-A **
28454598-G-T 26308451-G-T P1_gr2 **
28000546-A-AAGTC 25854399-A-AAGTC P1_Y2 **
26716294-C-A 24570147-C-A P1_g2 **
26026547-G-T 23880400-G-T P1_Y1 **
21783810-T-C **
23789656-C-A 21627770-C-A **
19040890-A-C 16929010-A-C **
18427681-G-T 16315801-G-T P6_Dst **
10942436-T-G **
14552464-C-A 12440665-C-A **
10975991-C-A **
11031355-C-G **
13213472-T-A 11057796-T-A **
13453578-CT-C 11297902-CT-C **
13480944-G-C 11325268-G-C **
13487763-GGCCACA-G 11332087-GGCCACA-G **
13489314-G-T 11333638-G-T **
13489318-C-T 11333642-C-T **
13493982-C-A 11338306-C-A **
23276529-C-A 21114643-C-A **
13723402-C-A 11567726-C-A **
11645062-G-T **
13999279-C-T 11878573-C-T **
14530483-G-T 12418684-G-T **
14607411-G-T 12495613-G-T **
17963621-A-T 15851741-A-T **
16423003-G-T 14311123-G-T **
17963620-A-T 15851740-A-T **
17932718-C-A 15820838-C-A **
17376478-C-A 15264598-C-A **
17230265-T-G 15118385-T-G **
17222598-A-C 15110718-A-C **
17181592-C-A 15069712-C-A **
16279020-T-G 14167140-T-G **
15320716-GA-G 13208834-GA-G **
16269389-C-A 14157509-C-A **
16035491-C-A 13923611-C-A **
16026277-A-C 13914397-A-C **
16005946-C-A 13894066-C-A **
15574801-T-C 13462921-T-C **
15450260-G-A 13338380-G-A **
26060227-G-T 23914080-G-T P1_Y1 **
22202094-C-A 20040208-C-A **
10940347-A-T **
18766808-T-C 16654928-T-C **
10861403-AATTCC-A **
10673913-C-A **
10922270-T-C **
21023249-GTTTT-G 18861363-GTTTT-G P4_Dst 14×T**
10682809-C-A **
10826849-C-T **
16990244-AAAAG-A 14878364-AAAAG-A **
10940337-AC-A **
10797946-T-C **
22240940-T-C 20079054-T-C DYZ19 **
20280161-TC-T 18118275-TC-T P5_Dst **
4244644-A-G 4376603-A-G **
10797984-C-A **
10671008-T-A **
10826868-C-T **
56850865-C-T **
10939010-C-A **
28724262-C-T 26578115-C-T **
13456864-T-C 11301188-T-C **
22536983-T-TAA 20375097-T-TAA 16×A**
10669421-C-T **
5824174-C-A 5956133-C-A **
10669418-C-G **
28724301-C-T 26578154-C-T **
15605398-C-A 13493518-C-A **
10772228-C-T **
16881453-C-A 14769573-C-A **
10922225-TACCACTACAA-T **
10961194-T-G **
10671036-C-T **
22268539-T-A 20106653-T-A DYZ19 **
10794253-C-T **
56850462-T-G **
13571725-G-T 11416049-G-T **
9537706-GT-G 9700097-GT-G IR3_Prx **
7918505-C-A 8050464-C-A **
10794311-C-A **
21515858-G-T 19353972-G-T **
10922272-C-A **
10922267-G-C **
10922202-T-A **
10922194-A-T **
17306601-C-A 15194721-C-A **
23825092-G-A 21663206-G-A **
3501021-C-A 3632980-C-A **
20850693-GTA-G 18688807-GTA-G P4_Dst 12×TA**
20850636-TGTG-T 18688750-TGTG-T P4_Dst **
18305910-T-G 16194030-T-G P6_Prx **
10785305-T-TAC **
10785304-A-ACTC **
10669409-C-T **
10772212-C-T **
10748288-A-T **
22361452-T-A 20199566-T-A DYZ19 **
10885077-C-A **
10794275-A-C **
10794301-T-TTCCAA **
10883895-C-CCCATT **
22361472-G-T 20199586-G-T DYZ19 **
22361467-T-C 20199581-T-C DYZ19 **
11667981-C-A **
10919171-T-G **
3091980-C-A 3223939-C-A **
28724302-A-G 26578155-A-G **
28724269-C-T 26578122-C-T **
11035775-G-T **
10961135-CCACTGCAGGA-C **
10919174-G-A **
10759802-C-T **
18365639-T-A 16253759-T-A P6_Prx **
56849975-T-C **
10760357-T-G **
10929282-C-A **
10759791-A-G **
14554396-C-A 12442597-C-A **
28724322-G-A 26578175-G-A **
6012764-C-A 6144723-C-A **
10911422-C-A **
9965751-G-T 10128142-G-T **
13623464-C-A 11467788-C-A **
20511012-C-A 18349126-C-A P5_Dst **
56840686-C-A **
10817316-G-C **
10817314-C-G **
7774146-C-A 7906105-C-A **
13981724-C-A 11861018-C-A **
3061144-C-A 3193103-C-A **
17561985-T-G 15450105-T-G **
56849992-C-A **
20458573-A-C 18296687-A-C P5_Dst **
10961168-T-G **
58996999-A-C 56850852-A-C **
18634783-A-G 16522903-A-G **
14550220-C-A 12438421-C-A **
11011230-C-A **
15276599-C-A 13164688-C-A Z25600 **
16462623-T-C 14350743-T-C **
20394410-CTTT-C 18232524-CTTT-C P5_Dst 26×T**
2773907-A-C 2905866-A-C **
10987914-C-A **
6741411-C-A 6873370-C-A **
15931747-C-A 13819867-C-A **
23808063-C-A 21646177-C-A **
8988156-G-T 9150547-G-T **
10759847-T-G **
17043008-C-A 14931128-C-A **
5011295-C-A 5143254-C-A **
15066004-C-A 12954096-C-A **
22135600-C-A 19973714-C-A **
14285928-C-A 12165222-C-A **
10759805-C-A **
23505191-C-A 21343305-C-A **
10664657-T-C **
10968236-C-T **
56728143-G-T **
14570841-G-T 12459041-G-T **
11662682-C-A **
10671042-A-C **
10671027-A-C **
10671021-C-T **
13196994-C-A 11041318-C-A **
18127687-T-C 16015807-T-C **
7311501-TTTCC-T 7443460-TTTCC-T 4×TTCC**
13456838-A-GGTTG 11301162-A-GGTTG **
56838844-G-T **
10772243-T-C **
10797955-C-T **
6478607-TA-T 6610566-TA-T 8×A**
6279325-T-TC 6411284-T-TC IR3_Dst **
28724337-C-T 26578190-C-T **
10817350-A-T **
16990279-C-A 14878399-C-A **
10772232-T-C **
8678141-G-T 8810100-G-T **
28771567-C-A 26625420-C-A **
59023962-C-A 56877815-C-A **
4830412-C-CTT 4962371-C-CTT 13×T**
16526485-C-A 14414605-C-A **
3605979-C-A 3737938-C-A **
5523194-C-A 5655153-C-A **
13475038-G-A 11319362-G-A FGC51318 ***
56837465-A-G ***
13719475-G-T 11563799-G-T ***
23435682-CTTTT-C 21273796-CTTTT-C 21×T***
13579801-A-G 11424125-A-G ***
16692107-G-GA 14580227-G-GA 8×A***
24503106-CAAAA-C 22356959-CAAAA-C 16×A***
15394238-C-A 13282358-C-A 9×A***
14754067-CTTT-C,CTT 12642136-CTTT-C,CTT 27×T***
8793031-ATT-A,ATTT 8924990-ATT-A,ATTT 13×T***
13811148-G-T 11690442-G-T ***
15190047-ATTT-A 13078133-ATTT-A 15×T***
11014434-T-A ***
6807702-CTT-C 6939661-CTT-C 12×T***
11022020-C-A ***
13453480-A-C 11297804-A-C ***
14715649-G-A 12603716-G-A ***
11022888-A-T ***
10801688-A-ACTCGG ***
56837419-G-T ***
13463924-T-C 11308248-T-C ***
13463905-C-T 11308229-C-T ***
17028818-G-A 14916938-G-A FGC82088 ***
8760517-CTTTTT-C,CTTTT 8892476-CTTTTT-C,CTTTT 20×T***
13811158-G-A 11690452-G-A ***
18398192-CATATATAT-C 16286312-CATATATAT-C P6_Gap 15×AT***
13463917-G-C 11308241-G-C ***
7517715-T-TA 7649674-T-TA 10×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 16728981298580064727885234
Used in age calculations981298580064727885234
Counts of SNPs1413
Variant counts last updated 2019-08-26 23:03:47.



Big Tree Main Page