O'Donoghue
BigY3: 183411, BigY2: 183411MDKA Birth:

Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
Position | Blocks | Names | Region | McDonald BED | combBED | STR | BigY3 183411 | BigY2 183411 |
---|---|---|---|---|---|---|---|---|
hg19:Y:20273396-A-AT hg38:Y:18111510-A-AT | P5_Dst | 8×T | A+ | |||||
hg19:Y:20974907-G-C hg38:Y:18813021-G-C | A4967 | P4_Dst | A* | |||||
hg19:Y:16642710-C-T hg38:Y:14530830-C-T | Y | Y | A* | |||||
hg19:Y:7869525-A-AT hg38:Y:8001484-A-AT | 9×T | A* | ||||||
hg19:Y:28816748-G-C hg38:Y:26670601-G-C | A* | |||||||
hg19:Y:13449681-G-T hg38:Y:11294005-G-T | A* | |||||||
hg19:Y:13450965-C-G hg38:Y:11295289-C-G | A* | |||||||
hg19:Y:20923141-C-T hg38:Y:18761255-C-T | P4_Dst | A* | ||||||
hg38:Y:56836780-A-C | A* | |||||||
hg19:Y:17758527-A-T hg38:Y:15646647-A-T | BY159548 | Y | Y | + | + | |||
hg19:Y:23088774-C-T hg38:Y:20926888-C-T | FT182631 | Y | Y | + | + | |||
hg19:Y:3646341-A-G hg38:Y:3778300-A-G | FT84362 | + | ||||||
hg38:Y:10822891-T-G | FT303169 | + | ||||||
hg19:Y:19302970-C-G hg38:Y:17191090-C-G | FT58442 | Y | + | |||||
hg38:Y:10686394-C-T | * | |||||||
hg19:Y:8333626-ACTTCTTCTT-A hg38:Y:8465585-ACTTCTTCTT-A | 25×CTT | ** | ||||||
hg19:Y:9416722-C-T hg38:Y:9579113-C-T | ** | |||||||
hg19:Y:20438783-G-T hg38:Y:18276897-G-T | P5_Dst | ** | ||||||
hg19:Y:16364101-TATATATATATAC-T hg38:Y:14252221-TATATATATATAC-T | ** | |||||||
hg19:Y:3148420-CTTTTTT-C hg38:Y:3280379-CTTTTTT-C | 18×T | ** | ||||||
hg19:Y:15612233-CAT-C hg38:Y:13500353-CAT-C | ** | |||||||
hg19:Y:13885605-C-A hg38:Y:11764899-C-A | ** | |||||||
hg19:Y:13480726-G-A hg38:Y:11325050-G-A | ** | |||||||
hg19:Y:13480760-G-T hg38:Y:11325084-G-T | ** | |||||||
hg19:Y:13712288-G-C hg38:Y:11556612-G-C | DYZ17 | ** | ||||||
hg19:Y:9940668-C-A hg38:Y:10103059-C-A | ** | |||||||
hg19:Y:13457768-T-A hg38:Y:11302092-T-A | ** | |||||||
hg19:Y:22894151-GAA-G hg38:Y:20732265-GAA-G | 28×A | ** | ||||||
hg19:Y:18612759-G-A hg38:Y:16500879-G-A | BZ1908 | 15×TA | ** | |||||
hg19:Y:13457765-C-A hg38:Y:11302089-C-A | ** | |||||||
hg19:Y:13824681-C-A hg38:Y:11703975-C-A | DYZ17 | ** | ||||||
hg19:Y:25317056-C-A hg38:Y:23170909-C-A | P2_r1 | ** | ||||||
hg38:Y:10856290-G-C | ** | |||||||
hg38:Y:10856300-C-T | ** | |||||||
hg38:Y:10856341-A-G | ** | |||||||
hg38:Y:10856360-C-G | ** | |||||||
hg38:Y:10856365-A-AC | ** | |||||||
hg38:Y:10856370-G-A | ** | |||||||
hg38:Y:10856378-G-C | ** | |||||||
hg38:Y:10856385-A-C | ** | |||||||
hg38:Y:10856389-G-T | ** | |||||||
hg19:Y:22113187-CAAAA-C hg38:Y:19951301-CAAAA-C | 23×A | ** | ||||||
hg19:Y:28815209-G-T hg38:Y:26669062-G-T | ** | |||||||
hg38:Y:10769384-C-T | ** | |||||||
hg38:Y:10842561-T-C | ** | |||||||
hg38:Y:10842579-CT-C | ** | |||||||
hg19:Y:16601415-A-C hg38:Y:14489535-A-C | ** | |||||||
hg38:Y:10969449-A-T | ** | |||||||
hg38:Y:10969453-C-T | ** | |||||||
hg38:Y:10969454-A-G | ** | |||||||
hg19:Y:18256212-C-A hg38:Y:16144332-C-A | ** | |||||||
hg19:Y:23723545-AT-A hg38:Y:21561659-AT-A | ** | |||||||
hg19:Y:2970428-C-A hg38:Y:3102387-C-A | ** | |||||||
hg19:Y:24629531-T-TG hg38:Y:22483384-T-TG | P3_t2 | ** | ||||||
hg38:Y2:6915-T-A | ** | |||||||
hg38:Y:10964881-C-G | ** | |||||||
hg38:Y:10964903-A-C | ** | |||||||
hg38:Y:10956569-C-CACTAT | ** | |||||||
hg19:Y:15881930-C-T hg38:Y:13770050-C-T | ** | |||||||
hg38:Y:12826705-GAA-G | 18×A | ** | ||||||
hg38:Y:10924309-C-T | ** | |||||||
hg19:Y:21515858-G-T hg38:Y:19353972-G-T | ** | |||||||
hg38:Y:10921075-T-C | ** | |||||||
hg19:Y:13958444-A-G hg38:Y:11837738-A-G | ** | |||||||
hg19:Y:22811008-C-T hg38:Y:20649122-C-T | ** | |||||||
hg19:Y:22811009-A-G hg38:Y:20649123-A-G | ** | |||||||
hg38:Y:10842769-C-A | ** | |||||||
hg38:Y:10880263-G-A | ** | |||||||
hg38:Y:10880269-A-T | ** | |||||||
hg38:Y:10909651-T-C | ** | |||||||
hg38:Y:10809099-TTTCGATTCTG-T | ** | |||||||
hg19:Y:14352808-C-A hg38:Y:12232103-C-A | ** | |||||||
hg19:Y:10013797-C-A hg38:Y:10176188-C-A | ** | |||||||
hg38:Y:10781333-C-A | ** | |||||||
hg38:Y:10964902-A-C | ** | |||||||
hg19:Y:13227817-T-G hg38:Y:11072141-T-G | ** | |||||||
hg19:Y:28818179-G-C hg38:Y:26672032-G-C | ** | |||||||
hg38:Y:10999523-C-A | ** | |||||||
hg38:Y:10899203-G-C | ** | |||||||
hg38:Y:10899223-G-C | ** | |||||||
hg38:Y:10899226-T-C | ** | |||||||
hg38:Y:10899233-C-T | ** | |||||||
hg38:Y:10899236-C-T | ** | |||||||
hg38:Y:10899238-C-A | FT230030 | ** | ||||||
hg19:Y:7270276-CTTTTT-C hg38:Y:7402235-CTTTTT-C | 25×T | ** | ||||||
hg38:Y:10956588-C-G | ** | |||||||
hg38:Y:10956603-C-G | ** | |||||||
hg38:Y:10687252-C-A | ** | |||||||
hg38:Y:10687270-C-G | ** | |||||||
hg19:Y:28792388-A-T hg38:Y:26646241-A-T | ** | |||||||
hg19:Y:9934218-C-A hg38:Y:10096609-C-A | ** | |||||||
hg38:Y:11025715-C-A | ** | |||||||
hg19:Y:20440394-T-TGTG hg38:Y:18278508-T-TGTG | P5_Dst | ** | ||||||
hg19:Y:27971754-CA-C hg38:Y:25825607-CA-C | P1_Y2 | ** | ||||||
hg19:Y:19668864-T-A hg38:Y:17556984-T-A | P5_Prx | ** | ||||||
hg19:Y:6519554-C-A hg38:Y:6651513-C-A | ** | |||||||
hg19:Y:9636623-TG-T hg38:Y:9799014-TG-T | IR3_Prx | ** | ||||||
hg38:Y:10808433-C-A | ** | |||||||
hg38:Y:10760706-TC-T | ** | |||||||
hg38:Y:10656875-T-C | ** | |||||||
hg19:Y:6244489-AC-A hg38:Y:6376448-AC-A | IR3_Dst | ** | ||||||
hg38:Y:10785309-A-G | ** | |||||||
hg38:Y:10817975-A-T | ** | |||||||
hg38:Y:10817984-A-C | ** | |||||||
hg38:Y:10817988-C-T | ** | |||||||
hg19:Y:20641605-GA-G hg38:Y:18479719-GA-G | P4_Prx | ** | ||||||
hg19:Y:15881912-CA-C hg38:Y:13770032-CA-C | ** | |||||||
hg19:Y:13961443-C-A hg38:Y:11840737-C-A | ** | |||||||
hg38:Y:10796843-A-ATGGCT | ** | |||||||
hg38:Y:10684206-C-T | ** | |||||||
hg19:Y:8849803-C-A hg38:Y:8981762-C-A | ** | |||||||
hg19:Y:5691215-C-A hg38:Y:5823174-C-A | ** | |||||||
hg19:Y:13484827-T-G hg38:Y:11329151-T-G | ** | |||||||
hg38:Y:10684224-C-A | ** | |||||||
hg19:Y:15696918-C-A hg38:Y:13585038-C-A | ** | |||||||
hg38:Y:10992359-C-A | ** | |||||||
hg19:Y:23050387-CA-C hg38:Y:20888501-CA-C | ** | |||||||
hg19:Y:14300639-C-T hg38:Y:12179933-C-T | ** | |||||||
hg38:Y:10846928-C-T | ** | |||||||
hg38:Y:10653688-C-A | ** | |||||||
hg38:Y:10792541-G-T | ** | |||||||
hg38:Y:10684198-T-A | ** | |||||||
hg38:Y:10684199-C-T | ** | |||||||
hg38:Y:10684211-T-A | ** | |||||||
hg38:Y:11022999-C-T | ** | |||||||
hg38:Y:11023000-T-G | ** | |||||||
hg38:Y:10818732-G-T | ** | |||||||
hg19:Y:7308296-C-A hg38:Y:7440255-C-A | ** | |||||||
hg38:Y:10914577-G-T | ** | |||||||
hg19:Y:18589697-A-ATT hg38:Y:16477817-A-ATT | 18×T | ** | ||||||
hg38:Y:10846904-A-G | ** | |||||||
hg38:Y:10846910-C-A | ** | |||||||
hg38:Y:10955501-C-A | ** | |||||||
hg38:Y:10955521-T-TC | ** | |||||||
hg19:Y:28815213-T-A hg38:Y:26669066-T-A | ** | |||||||
hg38:Y:10880259-A-T | ** | |||||||
hg38:Y:10671349-C-A | ** | |||||||
hg38:Y:11009026-C-T | ** | |||||||
hg38:Y:10824139-T-A | ** | |||||||
hg19:Y:6892646-A-C hg38:Y:7024605-A-C | ** | |||||||
hg38:Y:10656835-A-C | ** | |||||||
hg19:Y:13717530-G-T hg38:Y:11561854-G-T | DYZ17 | ** | ||||||
hg19:Y:7156875-C-A hg38:Y:7288834-C-A | ** | |||||||
hg38:Y:10785304-A-T | ** | |||||||
hg38:Y:10769882-A-G | ** | |||||||
hg19:Y:18997064-C-A hg38:Y:16885184-C-A | ** | |||||||
hg19:Y:19268362-C-A hg38:Y:17156482-C-A | ** | |||||||
hg19:Y:13961874-C-A hg38:Y:11841168-C-A | ** | |||||||
hg19:Y:3831446-C-A hg38:Y:3963405-C-A | ** | |||||||
hg38:Y:11035274-T-C | ** | |||||||
hg38:Y:10846936-T-TG | ** | |||||||
hg38:Y:10846939-AC-A | ** | |||||||
hg19:Y:26273303-A-C hg38:Y:24127156-A-C | P1_Y1 | ** | ||||||
hg19:Y:16692087-AC-A hg38:Y:14580207-AC-A | ** | |||||||
hg38:Y:11009036-C-T | ** | |||||||
hg19:Y:13497659-G-GA hg38:Y:11341983-G-GA | ** | |||||||
hg19:Y:7100656-C-A hg38:Y:7232615-C-A | ** | |||||||
hg38:Y:56851732-C-T | ** | |||||||
hg19:Y:13712262-T-A hg38:Y:11556586-T-A | DYZ17 | ** | ||||||
hg19:Y:13238308-T-G hg38:Y:11082632-T-G | ** | |||||||
hg19:Y:21073313-C-A hg38:Y:18911427-C-A | ** | |||||||
hg19:Y:16601418-G-C hg38:Y:14489538-G-C | ** | |||||||
hg19:Y:13885837-C-A hg38:Y:11765131-C-A | ** | |||||||
hg19:Y:7664662-C-A hg38:Y:7796621-C-A | ** | |||||||
hg38:Y:10787329-C-G | ** | |||||||
hg19:Y:20511012-C-A hg38:Y:18349126-C-A | P5_Dst | ** | ||||||
hg19:Y:20511018-C-A hg38:Y:18349132-C-A | P5_Dst | ** | ||||||
hg38:Y:10666457-C-A | ** | |||||||
hg19:Y:28644447-C-A hg38:Y:26498300-C-A | ** | |||||||
hg19:Y:23439935-G-T hg38:Y:21278049-G-T | ** | |||||||
hg19:Y:2901551-C-A hg38:Y:3033510-C-A | ** | |||||||
hg19:Y:16568107-C-A hg38:Y:14456227-C-A | ** | |||||||
hg19:Y:9640148-C-A hg38:Y:9802539-C-A | IR3_Prx | ** | ||||||
hg19:Y:15816357-C-A hg38:Y:13704477-C-A | ** | |||||||
hg19:Y:8977029-CAAAAAAAAA-C hg38:Y:9139420-CAAAAAAAAA-C | 16×A | ** | ||||||
hg38:Y:10947546-A-C | ** | |||||||
hg19:Y:17144098-C-A hg38:Y:15032218-C-A | ** | |||||||
hg19:Y:15881936-C-T hg38:Y:13770056-C-T | ** | |||||||
hg19:Y:14835332-T-A hg38:Y:12723399-T-A | A263 | ** | ||||||
hg19:Y:14825803-C-A hg38:Y:12713870-C-A | ** | |||||||
hg19:Y:14715800-G-T hg38:Y:12603867-G-T | ** | |||||||
hg38:Y:10930647-GTTCCA-G | ** | |||||||
hg19:Y:9416726-TCTTTG-T hg38:Y:9579117-TCTTTG-T | ** | |||||||
hg19:Y:28632793-C-A hg38:Y:26486646-C-A | ** | |||||||
hg38:Y:10955491-CATTCT-C | ** | |||||||
hg38:Y:10664804-C-A | ** | |||||||
hg19:Y:16336926-A-C hg38:Y:14225046-A-C | ** | |||||||
hg19:Y:4174962-CTTTT-C hg38:Y:4306921-CTTTT-C | 31×T | ** | ||||||
hg19:Y:22168976-G-T hg38:Y:20007090-G-T | ** | |||||||
hg19:Y:16941514-A-T hg38:Y:14829634-A-T | ** | |||||||
hg19:Y:13478188-A-T hg38:Y:11322512-A-T | ** | |||||||
hg19:Y:15881937-G-A hg38:Y:13770057-G-A | ** | |||||||
hg38:Y:10656892-T-G | ** | |||||||
hg38:Y:11009975-T-G | ** | |||||||
hg19:Y:13460779-C-A hg38:Y:11305103-C-A | ** | |||||||
hg19:Y:14404859-C-A hg38:Y:12284156-C-A | ** | |||||||
hg19:Y:2651323-C-A hg38:Y:2783282-C-A | ** | |||||||
hg19:Y:20632503-A-AC hg38:Y:18470617-A-AC | P4_Prx | ** | ||||||
hg19:Y:24929403-G-T hg38:Y:22783256-G-T | g1 | ** | ||||||
hg38:Y:56881169-CA-C | ** | |||||||
hg19:Y:14698305-C-CA hg38:Y:12586371-C-CA | ** | |||||||
hg38:Y:10946404-C-A | FT437714 | ** | ||||||
hg19:Y:20840866-C-A hg38:Y:18678980-C-A | P4_Gap | ** | ||||||
hg19:Y:16710383-C-A hg38:Y:14598503-C-A | ** | |||||||
hg38:Y:10955518-T-TCCCA | ** | |||||||
hg38:Y:10669461-T-G | ** | |||||||
hg38:Y:10977213-C-A | ** | |||||||
hg19:Y:17136920-A-T hg38:Y:15025040-A-T | ** | |||||||
hg19:Y:2665624-C-A hg38:Y:2797583-C-A | ** | |||||||
hg19:Y:16008085-G-T hg38:Y:13896205-G-T | ** | |||||||
hg19:Y:15785946-G-A hg38:Y:13674066-G-A | BY239 | Y30411 | ** | |||||
hg38:Y2:16579-A-T | ** | |||||||
hg19:Y:5246739-C-A hg38:Y:5378698-C-A | ** | |||||||
hg19:Y:17376012-G-T hg38:Y:15264132-G-T | ** | |||||||
hg19:Y:14055049-T-G hg38:Y:11934343-T-G | ** | |||||||
hg19:Y:3728021-C-A hg38:Y:3859980-C-A | ** | |||||||
hg19:Y:28808527-G-T hg38:Y:26662380-G-T | ** | |||||||
hg38:Y:10785301-T-C | ** | |||||||
hg19:Y:13855791-A-G hg38:Y:11735085-A-G | DYZ17 | ** | ||||||
hg38:Y:10749762-A-C | ** | |||||||
hg19:Y:15881899-T-C hg38:Y:13770019-T-C | ** | |||||||
hg19:Y:4524446-C-T hg38:Y:4656405-C-T | ** | |||||||
hg19:Y:17191340-A-G hg38:Y:15079460-A-G | BY154318 | ** | ||||||
hg19:Y:2677548-T-G hg38:Y:2809507-T-G | ** | |||||||
hg19:Y:2697542-G-T hg38:Y:2829501-G-T | ** | |||||||
hg19:Y:3015797-C-A hg38:Y:3147756-C-A | ** | |||||||
hg19:Y:3093829-C-A hg38:Y:3225788-C-A | ** | |||||||
hg19:Y:3148565-C-A hg38:Y:3280524-C-A | ** | |||||||
hg19:Y:3209481-A-C hg38:Y:3341440-A-C | ** | |||||||
hg19:Y:3467676-A-C hg38:Y:3599635-A-C | ** | |||||||
hg19:Y:3495630-G-T hg38:Y:3627589-G-T | ** | |||||||
hg19:Y:3497662-G-T hg38:Y:3629621-G-T | ** | |||||||
hg19:Y:3522630-G-T hg38:Y:3654589-G-T | ** | |||||||
hg19:Y:3727967-G-C hg38:Y:3859926-G-C | ** | |||||||
hg19:Y:4270655-G-A hg38:Y:4402614-G-A | ** | |||||||
hg19:Y:4497648-G-T hg38:Y:4629607-G-T | ** | |||||||
hg19:Y:4512120-G-T hg38:Y:4644079-G-T | ** | |||||||
hg19:Y:4524408-G-A hg38:Y:4656367-G-A | ** | |||||||
hg19:Y:4524414-C-T hg38:Y:4656373-C-T | ** | |||||||
hg19:Y:4524415-A-G hg38:Y:4656374-A-G | ** | |||||||
hg19:Y:4524417-G-A hg38:Y:4656376-G-A | ** | |||||||
hg19:Y:4957929-G-T hg38:Y:5089888-G-T | ** | |||||||
hg19:Y:5204336-G-C hg38:Y:5336295-G-C | ** | |||||||
hg19:Y:5204337-G-A hg38:Y:5336296-G-A | ** | |||||||
hg19:Y:5358868-A-G hg38:Y:5490827-A-G | ** | |||||||
hg19:Y:5443147-A-C hg38:Y:5575106-A-C | ** | |||||||
hg19:Y:5814365-C-A hg38:Y:5946324-C-A | ** | |||||||
hg19:Y:5814650-T-A hg38:Y:5946609-T-A | ** | |||||||
hg19:Y:5830128-T-G hg38:Y:5962087-T-G | ** | |||||||
hg19:Y:5945492-TG-T hg38:Y:6077451-TG-T | ** | |||||||
hg19:Y:5945497-C-A hg38:Y:6077456-C-A | ** | |||||||
hg19:Y:5945503-C-A hg38:Y:6077462-C-A | ** | |||||||
hg19:Y:6013626-C-A hg38:Y:6145585-C-A | FTB50530 | ** | ||||||
hg19:Y:6280425-GA-G hg38:Y:6412384-GA-G | IR3_Dst | 9×A | ** | |||||
hg19:Y:6355773-T-G hg38:Y:6487732-T-G | ** | |||||||
hg19:Y:6367891-C-T hg38:Y:6499850-C-T | ** | |||||||
hg19:Y:6478631-A-C hg38:Y:6610590-A-C | ** | |||||||
hg19:Y:7021743-C-A hg38:Y:7153702-C-A | ** | |||||||
hg19:Y:7093713-T-A hg38:Y:7225672-T-A | ** | |||||||
hg19:Y:7098671-C-A hg38:Y:7230630-C-A | ** | |||||||
hg19:Y:7148164-T-G hg38:Y:7280123-T-G | ** | |||||||
hg19:Y:7285139-T-G hg38:Y:7417098-T-G | ** | |||||||
hg19:Y:7389261-TTGAA-T hg38:Y:7521220-TTGAA-T | ** | |||||||
hg19:Y:7664529-T-G hg38:Y:7796488-T-G | ** | |||||||
hg19:Y:7664637-C-A hg38:Y:7796596-C-A | ** | |||||||
hg19:Y:8090726-C-A hg38:Y:8222685-C-A | ** | |||||||
hg19:Y:8124938-G-T hg38:Y:8256897-G-T | ** | |||||||
hg19:Y:8167029-G-T hg38:Y:8298988-G-T | ** | |||||||
hg19:Y:8807007-C-A hg38:Y:8938966-C-A | ** | |||||||
hg19:Y:9015504-T-G hg38:Y:9177895-T-G | ** | |||||||
hg19:Y:9173205-T-G hg38:Y:9335596-T-G | ** | |||||||
hg19:Y:9231556-G-T hg38:Y:9393947-G-T | ** | |||||||
hg19:Y:9932068-A-T hg38:Y:10094459-A-T | ** | |||||||
hg19:Y:10078697-G-T hg38:Y:10241088-G-T | ** | |||||||
hg19:Y:10079572-C-A hg38:Y:10241963-C-A | ** | |||||||
hg38:Y:10646656-C-A | ** | |||||||
hg38:Y:10656833-C-CG | ** | |||||||
hg38:Y:10656846-T-G | ** | |||||||
hg38:Y:10676960-A-C | ** | |||||||
hg38:Y:10679558-C-A | ** | |||||||
hg38:Y:10688389-T-C | ** | |||||||
hg38:Y:10689794-C-A | ** | |||||||
hg38:Y:10749746-G-A | ** | |||||||
hg38:Y:10749747-T-C | ** | |||||||
hg38:Y:10749748-G-C | ** | |||||||
hg38:Y:10749757-C-CACAGA | ** | |||||||
hg38:Y:10749782-C-CACTCT | ** | |||||||
hg38:Y:10766269-C-A | ** | |||||||
hg38:Y:10769884-T-A | ** | |||||||
hg38:Y:10769893-C-A | ** | |||||||
hg38:Y:10779331-T-A | ** | |||||||
hg38:Y:10779511-G-T | ** | |||||||
hg38:Y:10779522-G-A | ** | |||||||
hg38:Y:10779527-A-C | ** | |||||||
hg38:Y:10779531-G-C | ** | |||||||
hg38:Y:10785286-TC-T | ** | |||||||
hg38:Y:10785318-C-T | ** | |||||||
hg38:Y:10785320-T-TCCAAA | ** | |||||||
hg38:Y:10787336-A-T | ** | |||||||
hg38:Y:10790702-C-A | ** | |||||||
hg38:Y:10791172-A-T | ** | |||||||
hg38:Y:10794050-C-A | ** | |||||||
hg38:Y:10796827-C-CA | ** | |||||||
hg38:Y:10796829-TC-T | ** | |||||||
hg38:Y:10798321-C-CATTTG | ** | |||||||
hg38:Y:10798327-A-T | ** | |||||||
hg38:Y:10798336-C-A | ** | |||||||
hg38:Y:10805970-C-A | ** | |||||||
hg38:Y:10808498-A-G | ** | |||||||
hg38:Y:10808512-G-A | ** | |||||||
hg38:Y:10808515-C-G | ** | |||||||
hg38:Y:10808519-C-T | ** | |||||||
hg38:Y:10808524-C-T | ** | |||||||
hg38:Y:10817937-C-T | ** | |||||||
hg38:Y:10817951-A-G | ** | |||||||
hg38:Y:10829207-C-A | ** | |||||||
hg38:Y:10831898-T-G | ** | |||||||
hg38:Y:10838030-T-G | ** | |||||||
hg38:Y:10844666-T-A | ** | |||||||
hg38:Y:10844813-TATTCC-T | ** | |||||||
hg38:Y:10850171-T-G | ** | |||||||
hg38:Y:10851759-A-G | ** | |||||||
hg38:Y:10851812-C-A | ** | |||||||
hg38:Y:10862613-T-C | ** | |||||||
hg38:Y:10876419-A-T | ** | |||||||
hg38:Y:10876510-A-T | ** | |||||||
hg38:Y:10883899-T-G | ** | |||||||
hg38:Y:10884161-C-A | ** | |||||||
hg38:Y:10885165-TC-T | ** | |||||||
hg38:Y:10889212-C-A | ** | |||||||
hg38:Y:10893946-CATTCT-C | ** | |||||||
hg38:Y:10894518-T-A | ** | |||||||
hg38:Y:10900064-G-T | ** | |||||||
hg38:Y:10909600-G-T | ** | |||||||
hg38:Y:10909610-T-C | ** | |||||||
hg38:Y:10909612-C-T | ** | |||||||
hg38:Y:10909616-C-G | ** | |||||||
hg38:Y:10909618-G-T | ** | |||||||
hg38:Y:10913763-G-T | ** | |||||||
hg38:Y:10946388-C-A | ** | |||||||
hg38:Y:10947496-C-A | ** | |||||||
hg38:Y:10949564-A-T | ** | |||||||
hg38:Y:10955274-T-TCCACA | ** | |||||||
hg38:Y:10955479-A-C | ** | |||||||
hg38:Y:10974796-T-G | FT73603 | ** | ||||||
hg38:Y:10979125-C-G | ** | |||||||
hg38:Y:10979126-T-A | ** | |||||||
hg38:Y:10979128-A-T | ** | |||||||
hg38:Y:10980064-C-A | ** | |||||||
hg38:Y:10982195-A-C | ** | |||||||
hg38:Y:10992307-T-G | ** | |||||||
hg38:Y:10999214-T-G | ** | |||||||
hg38:Y:11006929-C-A | ** | |||||||
hg38:Y:11007562-C-A | ** | |||||||
hg38:Y:11009039-C-A | FT255310 | ** | ||||||
hg38:Y:11035259-C-T | ** | |||||||
hg38:Y:11035301-CCACACCACTT-C | ** | |||||||
hg19:Y:13197816-T-G hg38:Y:11042140-T-G | ** | |||||||
hg19:Y:13207855-A-T hg38:Y:11052179-A-T | ** | |||||||
hg19:Y:13255592-T-C hg38:Y:11099916-T-C | ** | |||||||
hg19:Y:13256038-T-C hg38:Y:11100362-T-C | ** | |||||||
hg19:Y:13257528-A-T hg38:Y:11101852-A-T | ** | |||||||
hg19:Y:13442819-G-T hg38:Y:11287143-G-T | ** | |||||||
hg19:Y:13456334-C-T hg38:Y:11300658-C-T | ** | |||||||
hg19:Y:13468182-G-C hg38:Y:11312506-G-C | ** | |||||||
hg19:Y:13484822-G-T hg38:Y:11329146-G-T | ** | |||||||
hg19:Y:13484858-A-T hg38:Y:11329182-A-T | ** | |||||||
hg19:Y:13505188-T-G hg38:Y:11349512-T-G | ** | |||||||
hg19:Y:13552051-G-T hg38:Y:11396375-G-T | ** | |||||||
hg19:Y:13695588-A-G hg38:Y:11539912-A-G | DYZ17 | ** | ||||||
hg38:Y:11652423-C-A | DYZ17 | ** | ||||||
hg38:Y:11659882-T-G | DYZ17 | ** | ||||||
hg38:Y:11670541-CA-C | DYZ17 | ** | ||||||
hg19:Y:13810932-T-G hg38:Y:11690226-T-G | DYZ17 | ** | ||||||
hg19:Y:13920007-C-A hg38:Y:11799301-C-A | ** | |||||||
hg19:Y:13938509-T-A hg38:Y:11817803-T-A | ** | |||||||
hg19:Y:14101045-C-G hg38:Y:11980339-C-G | ** | |||||||
hg19:Y:14180509-A-C hg38:Y:12059803-A-C | ** | |||||||
hg19:Y:14184458-G-A hg38:Y:12063752-G-A | ** | |||||||
hg19:Y:14308166-A-C hg38:Y:12187460-A-C | ** | |||||||
hg19:Y:14386718-A-G hg38:Y:12266014-A-G | ** | |||||||
hg19:Y:14485987-T-A hg38:Y:12365256-T-A | ** | |||||||
hg19:Y:14505410-G-A hg38:Y:12393615-G-A | ** | |||||||
hg19:Y:14516900-A-G hg38:Y:12405101-A-G | ** | |||||||
hg19:Y:14526501-A-C hg38:Y:12414702-A-C | ** | |||||||
hg19:Y:14575130-C-A hg38:Y:12463330-C-A | ** | |||||||
hg19:Y:14610544-C-A hg38:Y:12498746-C-A | ** | |||||||
hg19:Y:14760805-C-A hg38:Y:12648874-C-A | ** | |||||||
hg19:Y:14960172-G-T hg38:Y:12848247-G-T | ** | |||||||
hg19:Y:15169468-G-T hg38:Y:13057554-G-T | ** | |||||||
hg19:Y:15185361-A-C hg38:Y:13073447-A-C | ** | |||||||
hg19:Y:15422881-T-G hg38:Y:13311001-T-G | ** | |||||||
hg19:Y:15422982-A-C hg38:Y:13311102-A-C | ** | |||||||
hg19:Y:15774400-C-A hg38:Y:13662520-C-A | ** | |||||||
hg19:Y:15775974-C-A hg38:Y:13664094-C-A | ** | |||||||
hg19:Y:15881958-C-A hg38:Y:13770078-C-A | ** | |||||||
hg19:Y:15881971-G-A hg38:Y:13770091-G-A | ** | |||||||
hg19:Y:15881976-GA-G hg38:Y:13770096-GA-G | ** | |||||||
hg19:Y:15957658-T-C hg38:Y:13845778-T-C | ** | |||||||
hg19:Y:16027796-C-T hg38:Y:13915916-C-T | ** | |||||||
hg19:Y:16093011-CCCA-C hg38:Y:13981131-CCCA-C | ** | |||||||
hg19:Y:16211090-T-G hg38:Y:14099210-T-G | ** | |||||||
hg19:Y:16217923-A-C hg38:Y:14106043-A-C | ** | |||||||
hg19:Y:16767171-C-T hg38:Y:14655291-C-T | ** | |||||||
hg19:Y:16828877-T-C hg38:Y:14716997-T-C | ** | |||||||
hg19:Y:16848463-T-C hg38:Y:14736583-T-C | ** | |||||||
hg19:Y:16931492-G-T hg38:Y:14819612-G-T | ** | |||||||
hg19:Y:17725616-C-A hg38:Y:15613736-C-A | ** | |||||||
hg19:Y:17926560-G-AT hg38:Y:15814680-G-AT | ** | |||||||
hg19:Y:18086328-C-A hg38:Y:15974448-C-A | ** | |||||||
hg19:Y:18152467-C-A hg38:Y:16040587-C-A | ** | |||||||
hg19:Y:18321176-G-C hg38:Y:16209296-G-C | P6_Prx | ** | ||||||
hg19:Y:19020081-C-T hg38:Y:16908201-C-T | ** | |||||||
hg19:Y:19122025-T-G hg38:Y:17010145-T-G | ** | |||||||
hg19:Y:19209830-A-C hg38:Y:17097950-A-C | ** | |||||||
hg19:Y:19438138-AAA-T hg38:Y:17326258-AAA-T | ** | |||||||
hg19:Y:19438146-G-A hg38:Y:17326266-G-A | ** | |||||||
hg19:Y:19681193-A-C hg38:Y:17569313-A-C | P5_Prx | ** | ||||||
hg19:Y:20025464-T-G hg38:Y:17913584-T-G | P5_Prx | ** | ||||||
hg19:Y:20241073-C-T hg38:Y:18079187-C-T | P5_Dst | ** | ||||||
hg19:Y:20723995-T-G hg38:Y:18562109-T-G | P4_Prx | ** | ||||||
hg19:Y:21042963-T-G hg38:Y:18881077-T-G | ** | |||||||
hg19:Y:21320068-T-G hg38:Y:19158182-T-G | FTA29152 | ** | ||||||
hg19:Y:21582585-C-T hg38:Y:19420699-C-T | ** | |||||||
hg19:Y:22058762-T-G hg38:Y:19896876-T-G | ** | |||||||
hg19:Y:22241533-T-G hg38:Y:20079647-T-G | DYZ19 | ** | ||||||
hg19:Y:22564804-T-G hg38:Y:20402918-T-G | ** | |||||||
hg19:Y:23350607-A-C hg38:Y:21188721-A-C | ** | |||||||
hg19:Y:23426958-C-T hg38:Y:21265072-C-T | ** | |||||||
hg19:Y:23953495-C-A hg38:Y:21807348-C-A | ** | |||||||
hg19:Y:24278321-AGGGAGGGAG-A hg38:Y:22132174-AGGGAGGGAG-A | P3_b1 | ** | ||||||
hg19:Y:24285505-G-T hg38:Y:22139358-G-T | P3_t1 | ** | ||||||
hg19:Y:24285575-A-C hg38:Y:22139428-A-C | P3_t1 | ** | ||||||
hg19:Y:24422014-AAATCT-G hg38:Y:22275867-AAATCT-G | ** | |||||||
hg19:Y:24611453-A-C hg38:Y:22465306-A-C | P3_t2 | ** | ||||||
hg19:Y:25317032-C-A hg38:Y:23170885-C-A | P2_r1 | ** | ||||||
hg19:Y:25317042-C-A hg38:Y:23170895-C-A | P2_r1 | ** | ||||||
hg19:Y:26206157-G-T hg38:Y:24060010-G-T | P1_Y1 | ** | ||||||
hg19:Y:26206164-C-T hg38:Y:24060017-C-T | P1_Y1 | ** | ||||||
hg19:Y:27971641-A-G hg38:Y:25825494-A-G | P1_Y2 | ** | ||||||
hg19:Y:28496372-C-T hg38:Y:26350225-C-T | ** | |||||||
hg19:Y:28531978-C-T hg38:Y:26385831-C-T | ** | |||||||
hg19:Y:28549806-A-C hg38:Y:26403659-A-C | ** | |||||||
hg19:Y:28736151-A-C hg38:Y:26590004-A-C | ** | |||||||
hg19:Y:28736166-T-G hg38:Y:26590019-T-G | ** | |||||||
hg19:Y:28795650-T-G hg38:Y:26649503-T-G | ** | ** | ||||||
hg19:Y:28818970-G-A hg38:Y:26672823-G-A | ** | |||||||
hg19:Y:28818973-G-A hg38:Y:26672826-G-A | ** | |||||||
hg38:Y:56842044-G-T | ** | |||||||
hg19:Y:13467628-A-C hg38:Y:11311952-A-C | ** | |||||||
hg19:Y:13364146-C-A hg38:Y:11208470-C-A | 26×A | ** | ||||||
hg19:Y:3746328-C-CT hg38:Y:3878287-C-CT | 8×T | ** | ||||||
hg19:Y:3758883-T-C hg38:Y:3890842-T-C | ** | |||||||
hg19:Y:4973127-CA-C hg38:Y:5105086-CA-C | ** | |||||||
hg19:Y:5720909-T-G hg38:Y:5852868-T-G | ** | |||||||
hg19:Y:6382294-G-A hg38:Y:6514253-G-A | ** | |||||||
hg19:Y:6590483-A-T hg38:Y:6722442-A-T | ** | |||||||
hg19:Y:7285609-A-G hg38:Y:7417568-A-G | ** | |||||||
hg19:Y:13457526-C-T hg38:Y:11301850-C-T | ** | |||||||
hg19:Y:13465715-T-TC hg38:Y:11310039-T-TC | ** | |||||||
hg19:Y:16170328-C-T hg38:Y:14058448-C-T | ** | |||||||
hg19:Y:17191348-A-G hg38:Y:15079468-A-G | ** | |||||||
hg19:Y:17270243-A-G hg38:Y:15158363-A-G | ** | |||||||
hg19:Y:18740841-T-A hg38:Y:16628961-T-A | FTB31505 | ** | ||||||
hg19:Y:18932614-T-C hg38:Y:16820734-T-C | ** | |||||||
hg19:Y:20802880-A-G hg38:Y:18640994-A-G | P4_Gap | ** | ||||||
hg19:Y:22537318-A-G hg38:Y:20375432-A-G | ** | |||||||
hg19:Y:25305221-T-A hg38:Y:23159074-T-A | P2_r1 | ** | ||||||
hg19:Y:15459604-CA-C hg38:Y:13347724-CA-C | 10×A | *** | ||||||
hg19:Y:23523620-C-T hg38:Y:21361734-C-T | *** | |||||||
hg19:Y:13486824-G-C hg38:Y:11331148-G-C | *** | |||||||
hg19:Y:6863818-CTTTTTT-C hg38:Y:6995777-CTTTTTT-C | 21×T | *** | ||||||
hg19:Y:13489178-C-A hg38:Y:11333502-C-A | *** | |||||||
hg19:Y:23389531-CTTTTT-C hg38:Y:21227645-CTTTTT-C | 18×T | *** | ||||||
hg19:Y:59008768-CTTT-C,CTTTTTT hg38:Y:56862621-CTTT-C,CTTTTTT | 14×T | *** | ||||||
hg38:Y:10880308-A-T | *** | |||||||
hg19:Y:17361058-CAAAAAA-C hg38:Y:15249178-CAAAAAA-C | 25×A | *** | ||||||
hg38:Y:10842576-A-AC | *** | |||||||
hg19:Y:13488933-T-A,G hg38:Y:11333257-T-A,G | *** | |||||||
hg19:Y:22722338-CTTTTT-C hg38:Y:20560452-CTTTTT-C | 24×T | *** | ||||||
hg38:Y:10755423-A-G,T | *** | |||||||
hg19:Y:13296344-C-A hg38:Y:11140668-C-A | *** | |||||||
hg19:Y:16018308-C-A hg38:Y:13906428-C-A | *** | |||||||
hg19:Y:13838432-GA-G hg38:Y:11717726-GA-G | DYZ17 | *** | ||||||
hg19:Y:21469243-CTT-C hg38:Y:19307357-CTT-C | 13×T | *** | ||||||
hg38:Y:10971921-C-T | *** | |||||||
hg19:Y:18855403-CTTTT-C hg38:Y:16743523-CTTTT-C | 14×T | *** | ||||||
hg19:Y:13838457-G-A hg38:Y:11717751-G-A | DYZ17 | *** | ||||||
hg19:Y:15532909-C-A hg38:Y:13421029-C-A | *** | |||||||
hg19:Y:13406358-C-A hg38:Y:11250682-C-A | *** | |||||||
hg38:Y:10689134-A-T | *** | |||||||
hg19:Y:13869140-G-T hg38:Y:11748434-G-T | DYZ17 | *** | ||||||
hg19:Y:13838461-G-A hg38:Y:11717755-G-A | DYZ17 | *** | ||||||
hg38:Y:10686567-T-G | *** | |||||||
hg38:Y:10686582-A-G | *** | |||||||
hg38:Y:10686589-T-A | *** | |||||||
hg19:Y:13869086-A-T hg38:Y:11748380-A-T | DYZ17 | *** | ||||||
hg19:Y:13869095-G-C hg38:Y:11748389-G-C | DYZ17 | *** | ||||||
hg38:Y:10969798-A-C | *** | |||||||
hg38:Y:10969804-T-C | *** | |||||||
hg19:Y:22707685-CT-C hg38:Y:20545799-CT-C | 10×T | *** | ||||||
hg19:Y:24389735-GTT-G hg38:Y:22243588-GTT-G | 14×T | *** | ||||||
hg19:Y:6919371-T-C hg38:Y:7051330-T-C | *** | |||||||
hg19:Y:3193186-A-AT hg38:Y:3325145-A-AT | 10×T | *** | ||||||
hg38:Y:10969786-T-C | *** | |||||||
hg19:Y:6919372-G-A hg38:Y:7051331-G-A | *** | |||||||
hg19:Y:7783166-C-A hg38:Y:7915125-C-A | *** | |||||||
hg38:Y:10969806-C-T | *** | |||||||
hg19:Y:13271848-C-T hg38:Y:11116172-C-T | *** | |||||||
hg19:Y:13453223-C-A hg38:Y:11297547-C-A | *** | |||||||
hg19:Y:15611933-C-T hg38:Y:13500053-C-T | *** | |||||||
hg19:Y:15770330-C-A hg38:Y:13658450-C-A | *** | |||||||
hg19:Y:16272317-G-T hg38:Y:14160437-G-T | *** | |||||||
hg19:Y:22297914-T-A hg38:Y:20136028-T-A | DYZ19 | *** | ||||||
hg19:Y:22634856-TTTTATTTA-T,TTTTA hg38:Y:20472970-TTTTATTTA-T,TTTTA | 11×TTTA | *** | ||||||
hg19:Y:23197360-CAAAA-C,CAAA hg38:Y:21035474-CAAAA-C,CAAA | 17×A | *** | ||||||
hg38:Y:56850987-C-A | *** | |||||||
hg19:Y:22537203-T-C hg38:Y:20375317-T-C | *** | |||||||
hg19:Y:5234764-CTTTTT-C hg38:Y:5366723-CTTTTT-C | 19×T | *** | ||||||
hg19:Y:13476791-C-CA hg38:Y:11321115-C-CA | *** | |||||||
hg19:Y:13459268-T-TGCCAC hg38:Y:11303592-T-TGCCAC | *** | |||||||
hg19:Y:6539997-CAA-C hg38:Y:6671956-CAA-C | 13×A | *** | ||||||
hg19:Y:3125374-A-G hg38:Y:3257333-A-G | *** | |||||||
hg19:Y:3253855-T-C hg38:Y:3385814-T-C | *** | |||||||
hg19:Y:3679681-A-G hg38:Y:3811640-A-G | *** | |||||||
hg19:Y:4049821-A-G hg38:Y:4181780-A-G | *** | |||||||
hg19:Y:4167657-CAA-C,CA hg38:Y:4299616-CAA-C,CA | 18×A | *** | ||||||
hg19:Y:4272799-AT-A hg38:Y:4404758-AT-A | *** | |||||||
hg19:Y:5229600-C-CTT hg38:Y:5361559-C-CTT | 13×T | *** | ||||||
hg19:Y:5535158-T-A hg38:Y:5667117-T-A | *** | |||||||
hg19:Y:6100552-TAAA-T,TA hg38:Y:6232511-TAAA-T,TA | 15×A | *** | ||||||
hg19:Y:7721056-A-G hg38:Y:7853015-A-G | *** | |||||||
hg19:Y:9042513-T-G hg38:Y:9204904-T-G | *** | |||||||
hg19:Y:9804866-C-T hg38:Y:9967257-C-T | *** | |||||||
hg19:Y:9908911-CT-C hg38:Y:10071302-CT-C | 8×T | *** | ||||||
hg19:Y:10082064-A-G hg38:Y:10244455-A-G | *** | |||||||
hg19:Y:14278660-G-A hg38:Y:12157954-G-A | *** | |||||||
hg19:Y:15893929-A-G hg38:Y:13782049-A-G | *** | |||||||
hg19:Y:15923316-A-AT hg38:Y:13811436-A-AT | 9×T | *** | ||||||
hg19:Y:17191355-A-G hg38:Y:15079475-A-G | *** | |||||||
hg19:Y:18568254-C-A hg38:Y:16456374-C-A | *** | |||||||
hg19:Y:18568259-A-G hg38:Y:16456379-A-G | *** | |||||||
hg19:Y:18795567-G-A hg38:Y:16683687-G-A | *** | |||||||
hg19:Y:22437732-A-T hg38:Y:20275846-A-T | DYZ19 | *** | ||||||
hg19:Y:23965355-T-C hg38:Y:21819208-T-C | *** | |||||||
hg19:Y:28748630-AC-A hg38:Y:26602483-AC-A | *** | |||||||
hg38:Y:56830828-TCCA-T | *** | |||||||
hg38:Y:56874843-C-T | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Age Analysis Information (work in progress)
All | McDonald | YFull | |
Kit: 183411 | 9771034 | 7974879 | 7856962 |
Kit: 183411 | 14760462 | 9251391 | 8230711 |
Used in age calculations | 14760462 | 9251391 | 8230711 |
Counts of SNPs | 4 | 3 |
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