Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > ZZ40 > S21184 > S19290 > S16785 > ZZ74 > BY152600

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
760012
BigY3
760012
19908005-C-T 17796125-C-T P5_Prx A*A*
20271771-G-A 18109885-G-A P5_Dst A*
13908362-A-G 11787656-A-G FGC81672 YYA*
19789292-C-T 17677412-C-T P5_Prx A*
22286207-T-A 20124321-T-A DYZ19 A*
23175857-C-G 21013971-C-G YA*
25574747-A-T 23428600-A-T P1_gr1 A*
14376539-A-G 12255835-A-G YY**+
3251410-G-GT 3383369-G-GT ***+
13802650-G-A 11681944-G-A BY153430 ++
8584836-G-T 8716795-G-T BY152970 YY++
22104997-A-G 19943111-A-G BY155203 YY++
18858397-G-T 16746517-G-T BY154734 YY++
3074059-A-G 3206018-A-G BY152356 ++
7812862-T-A 7944821-T-A BY152718 YY++
7008646-C-T 7140605-C-T YY**+
16582164-C-A 14470284-C-A BY154156 YY++
16539290-A-C 14427410-A-C BY154144 YY++
16767312-G-A 14655432-G-A BY154207 YY++
13871290-G-C 11750584-G-C Y**+
19146952-C-T 17035072-C-T BY154813 YY++
14754737-G-T 12642806-G-T BY153712 YY++
8810425-G-C 8942384-G-C BY153043 YY++
7029523-G-T 7161482-G-T BY152518 Y++
10792799-A-C +
27633579-G-A 25487432-G-A P1_Y2 +
22271662-A-T 20109776-A-T BY215234 DYZ19 +
9389493-C-T 9551884-C-T BY153151 Y++
3545167-T-G 3677126-T-G L247 S293 ++
18174838-G-T 16062958-G-T YY+
22528615-T-A 20366729-T-A BY155358 Y++
7150320-C-T 7282279-C-T Y+
22565260-A-T 20403374-A-T BY155367 YY++
4253977-C-T 4385936-C-T Z23651 +
6469193-AG-A 6601152-AG-A +
5897842-T-A 6029801-T-A +
4982590-A-G 5114549-A-G +
22565001-T-G 20403115-T-G YY**+
17841625-T-C 15729745-T-C YY**+
14248086-TG-T 12127380-TG-T +**
10872263-CTCCAT-C *
13456627-C-T 11300951-C-T *
13819004-G-GATGGAATGGA 11698298-G-GATGGAATGGA 11×ATGGA*
10759180-C-T **
10759185-T-TTATTC **
10759192-A-T **
10759177-A-T **
10759193-T-C **
10755576-C-A **
10746542-T-A **
9967067-C-A 10129458-C-A **
9930142-C-A 10092533-C-A **
9820453-G-T 9982844-G-T **
9785799-T-C 9948190-T-C BY80977 **
10760075-C-T **
10804698-A-G **
10761166-T-A **
10845743-T-A **
10956414-C-T **
10948516-C-A **
10947052-T-G **
10943570-C-A **
10943515-C-A **
10873149-A-C **
10872820-C-T **
10850082-T-A **
10846011-C-A **
10845659-T-C **
10773229-C-T **
10839522-C-T **
10836566-C-A **
10826262-A-G **
10826079-T-C **
10811535-G-T **
10806284-C-A **
10802936-C-A **
10798475-G-T **
10779529-A-C **
10776063-TCCGCTCCAC-T **
9674120-C-A 9836511-C-A IR3_Prx **
13455793-C-G 11300117-C-G **
9542060-GTGTGTGT-G 9704451-GTGTGTGT-G IR3_Prx **
2917858-G-T 3049817-G-T **
5667285-T-C 5799244-T-C **
5650632-T-A 5782591-T-A **
5305968-C-A 5437927-C-A **
4867553-C-A 4999512-C-A **
4711933-C-T 4843892-C-T **
4650520-TAC-T 4782479-TAC-T 8×AC**
9221660-CATATAT-C 9384051-CATATAT-C 27×AT**
3274588-C-A 3406547-C-A **
3252788-C-A 3384747-C-A **
2917772-G-T 3049731-G-T **
5922216-G-T 6054175-G-T **
2916111-C-A 3048070-C-A **
2817278-G-A 2949237-G-A **
2795570-T-TG 2927529-T-TG **
3987651-C-A 4119610-C-A **
18196534-G-T 16084654-G-T **
24424278-C-A 22278131-C-A **
3681397-G-T 3813356-G-T **
22550031-C-A 20388145-C-A **
2783594-CA-T 2915553-CA-T **
5698924-G-T 5830883-G-T **
6368079-G-T 6500038-G-T **
9508524-A-T 9670915-A-T **
10956761-G-C **
9506963-C-T 9669354-C-T **
9108971-G-T **
8914612-C-A 9046571-C-A **
8732273-G-T 8864232-G-T **
8713137-C-A 8845096-C-A **
8636081-A-G 8768040-A-G **
8291030-C-A 8422989-C-A **
8213504-A-G 8345463-A-G **
8157228-T-G 8289187-T-G **
8109825-T-C 8241784-T-C **
6427710-A-C 6559669-A-C **
8001021-A-T 8132980-A-T **
7996370-A-G 8128329-A-G **
7885479-T-A 8017438-T-A **
7821438-C-A 7953397-C-A **
7310442-G-C 7442401-G-C **
7225667-C-A 7357626-C-A **
7163059-C-A 7295018-C-A **
6918404-C-T 7050363-C-T **
6516422-G-A 6648381-G-A **
6454657-C-A 6586616-C-A **
10956746-ACCCATTCCAC-A **
14029492-G-T 11908786-G-T **
10981299-A-G **
21714748-CAAAAAAA-C 19552862-CAAAAAAA-C 53×A**
23343714-T-A 21181828-T-A **
23343697-A-G 21181811-A-G **
23329674-C-A 21167788-C-A **
23205384-C-A 21043498-C-A **
23056468-T-C 20894582-T-C **
22970315-C-A 20808429-C-A **
22965457-G-T 20803571-G-T **
22935407-C-A 20773521-C-A **
22166594-C-A 20004708-C-A **
21714234-T-C 19552348-T-C **
21757686-A-G ****
21156879-T-C 18994993-T-C **
20784352-C-A 18622466-C-A P4_Prx **
20614738-T-G 18452852-T-G P4_Prx **
20509908-GGGGGA-G 18348022-GGGGGA-G P5_Dst **
20446405-A-C 18284519-A-C P5_Dst **
19967072-T-A 17855192-T-A P5_Prx **
19839607-C-A 17727727-C-A P5_Prx **
19023317-T-G 16911437-T-G **
18956287-C-A 16844407-C-A **
23420500-A-T 21258614-A-T **
24257445-A-G 22111298-A-G P3_b1 **
18569645-T-C 16457765-T-C **
28783470-C-A 26637323-C-A **
22477056-G-T 20315170-G-T DYZ19 **
20768550-C-A 18606664-C-A P4_Prx **
17702479-T-C 15590599-T-C **
3082906-G-T 3214865-G-T **
25982576-C-CAGA 23836429-C-CAGA P1_Y1 **
13455760-A-G 11300084-A-G **
25915632-T-C 23769485-T-C P1_Y1 **
10776063-T-C **
28797820-T-C 26651673-T-C **
28600270-T-G 26454123-T-G **
24295368-C-CAA 22149221-C-CAA P3_t1 **
27570867-C-A 25424720-C-A P1_Y2 20×GT**
27540923-CA-C 25394776-CA-C P1_Y2 **
26247607-G-A 24101460-G-A P1_Y1 **
25967793-C-A 23821646-C-A P1_Y1 **
25466629-AGG-A 23320482-AGG-A P2_r2 **
25333846-C-A 23187699-C-A P2_r1 **
24841460-G-T 22695313-G-T P3_b2 **
24461817-G-T 22315670-G-T **
24424208-C-A 22278061-C-A **
18778834-C-A 16666954-C-A **
18535851-A-C 16423971-A-C P6_Dst **
11007683-C-A **
13856446-T-G 11735740-T-G **
14377116-C-A 12256412-C-A **
14147920-G-T 12027214-G-T **
14147886-G-T 12027180-G-T **
14147877-G-A 12027171-G-A **
14147872-G-C 12027166-G-C **
14033848-A-G 11913142-A-G **
10956744-C-G **
13859853-T-C 11739147-T-C **
13856454-A-C 11735748-A-C **
13856151-T-G 11735445-T-G **
15209530-A-ATTT 13097616-A-ATTT 16×T**
11648220-G-T **
11643314-G-A **
13594376-T-G 11438700-T-G **
13571610-C-A 11415934-C-A **
13521206-G-A 11365530-G-A **
13461349-G-T 11305673-G-T **
13456359-C-A 11300683-C-A **
11025270-T-C **
11025231-T-C **
14453734-G-T 12333007-G-T **
15288178-C-A 13176277-C-A **
18535845-AAAAT-CCCCC 16423965-AAAAT-CCCCC P6_Dst **
17315073-G-A 15203193-G-A **
18522339-C-T 16410459-C-T P6_Dst **
18480234-A-G 16368354-A-G P6_Dst **
18262587-C-A 16150707-C-A **
18249859-G-A 16137979-G-A **
18218297-A-G 16106417-A-G **
18188492-G-T 16076612-G-T **
17597119-A-T 15485239-A-T **
17548120-C-A 15436240-C-A **
17327332-A-C 15215452-A-C **
17277917-T-C 15166037-T-C **
15411256-C-G 13299376-C-G **
17147520-TTCTC-T 15035640-TTCTC-T **
16827634-C-A 14715754-C-A **
16625577-C-A 14513697-C-A **
16614678-C-A 14502798-C-A **
16561352-T-C 14449472-T-C **
16493194-T-A 14381314-T-A **
16246201-G-T 14134321-G-T **
16002371-C-A 13890491-C-A **
15477965-A-G 13366085-A-G **
15477224-A-G 13365344-A-G **
24407233-G-T 22261086-G-T **
3951432-C-A 4083391-C-A **
10956706-C-T **
14065818-C-A 11945112-C-A **
14219630-G-A 12098924-G-A **
17090702-C-A 14978822-C-A **
18006607-C-A 15894727-C-A P7_Gap **
56842248-G-T **
6130786-C-A 6262745-C-A **
2783572-G-A 2915531-G-A **
2783571-T-C 2915530-T-C **
14397819-C-A 12277115-C-A **
22075810-C-A 19913924-C-A **
10768566-C-A **
19014077-G-T 16902197-G-T **
10956783-T-C **
7322634-C-A 7454593-C-A **
25301822-G-T 23155675-G-T P2_r1 **
14910909-C-A 12798976-C-A **
10686691-CATTGT-C **
14158282-C-A 12037576-C-A **
11018224-A-C **
19668831-G-T 17556951-G-T P5_Prx **
15866709-C-A 13754829-C-A **
14795080-C-A 12683151-C-A 24×T**
6330227-CA-C 6462186-CA-C IR3_Dst **
10759163-T-G **
28774400-A-C 26628253-A-C **
10937604-C-A **
10992309-C-G **
6273858-AC-A 6405817-AC-A IR3_Dst **
10796481-C-A **
6305913-C-A 6437872-C-A IR3_Dst 14×A**
15336019-CAA-C 13224137-CAA-C 30×A**
10689102-C-A **
24841476-G-T 22695329-G-T P3_b2 **
10759161-C-A **
10950911-C-G **
10759157-A-T **
10759150-A-T **
10759148-C-T **
11018227-C-A **
10748273-A-T **
10655877-C-T **
21012257-G-T 18850371-G-T P4_Dst **
10950938-T-C **
10689126-T-A **
22325157-A-G 20163271-A-G DYZ19 **
17992528-C-A 15880648-C-A P7_Prx **
17449251-C-A 15337371-C-A **
13455770-A-G 11300094-A-G **
10845701-C-A **
10825239-C-A BY27041 **
10825237-T-C **
3550573-TC-A 3682532-TC-A **
22309916-T-C 20148030-T-C DYZ19 **
26386480-C-A 24240333-C-A P1_Y1 20×A**
13138403-C-T 10627889-C-T **
8045342-C-A 8177301-C-A **
13478213-C-A 11322537-C-A A17121 **
10956721-T-C **
26400765-A-AT 24254618-A-AT P1_Y1 11×T**
15798318-C-A 13686438-C-A **
3411677-C-T 3543636-C-T **
18172947-A-G 16061067-A-G CTS8742 PF3776 **
7461743-A-T 7593702-A-T IR1_L **
24295364-T-A 22149217-T-A P3_t1 9×AC**
23401471-C-T 21239585-C-T CTS11979 PF3878 **
9952274-C-A 10114665-C-A **
13143116-C-T 10632602-C-T **
10992283-C-G **
10759908-T-G **
24389894-C-CT 22243747-C-CT 26×T**
9048142-AT-A 9210533-AT-A **
10889764-C-G **
10884554-C-T **
28806435-AGTGGAGTGGC-A 26660288-AGTGGAGTGGC-A **
28806425-C-A 26660278-C-A **
28806423-G-C 26660276-G-C **
28806410-G-A 26660263-G-A **
11025290-T-C **
2772825-C-A 2904784-C-A **
8214860-GTTTT-G 8346819-GTTTT-G 21×T**
10764632-T-C **
23368619-C-A 21206733-C-A **
10956704-C-A **
18891309-C-A 16779429-C-A **
23343704-A-G 21181818-A-G **
6106061-CAA-C 6238020-CAA-C 20×A**
10759913-T-G **
10759883-TGCACC-T **
4936641-C-A 5068600-C-A **
13939041-C-A 11818335-C-A **
10997833-C-A **
19270615-C-G 17158735-C-G **
10950926-C-G **
56771174-G-C **
24381350-C-A 22235203-C-A **
11666955-C-G **
10996972-G-T **
19012388-C-A 16900508-C-A **
7706368-C-A 7838327-C-A **
16247264-C-A 14135384-C-A **
18388340-C-A 16276460-C-A P6_Gap **
10693440-C-G **
20230152-T-TAAA 18068266-T-TAAA P5_Dst 16×A**
10866979-C-A **
11666967-A-T **
10859081-A-T **
7090656-C-A 7222615-C-A **
10956673-C-T **
13455758-C-T 11300082-C-T **
10759178-T-C **
14622088-C-A 12510286-C-A **
10911791-C-A **
10873142-G-A **
56842291-C-T **
11666957-A-T **
11666999-C-G **
4063241-C-A 4195200-C-A **
10689103-C-A **
10939809-G-C **
10761137-C-T **
22893458-T-C 20731572-T-C **
14147905-C-T 12027199-C-T **
14147885-C-T 12027179-C-T **
7318599-C-A 7450558-C-A **
14338932-C-A 12218227-C-A **
10873143-C-A **
10827539-C-A **
6305904-G-T 6437863-G-T IR3_Dst **
11667000-A-G **
10990080-A-ACTC **
10990077-A-ACT **
24265854-A-G 22119707-A-G P3_b1 **
10986951-C-A **
10747791-T-C **
10939814-T-C **
10768565-A-C **
14761249-C-A 12649318-C-A **
5200592-G-T 5332551-G-T **
56842251-C-G **
10939825-C-T **
22518536-G-A 20356650-G-A **
11007467-T-A **
56771151-A-T **
11003684-G-A **
14147930-G-T 12027224-G-T **
14147927-G-C 12027221-G-C **
16645620-C-A 14533740-C-A **
10911824-C-A **
15477977-T-C 13366097-T-C **
10024115-C-A 10186506-C-A **
16541145-C-A 14429265-C-A **
10752348-C-A **
28555150-G-T 26409003-G-T **
14147879-A-G 12027173-A-G **
14147857-T-C 12027151-T-C **
10900906-C-T **
15109040-C-A 12997127-C-A **
3500633-C-A 3632592-C-A **
21963862-C-A 19801976-C-A **
10677626-C-A **
13477471-C-A 11321795-C-A **
28492996-G-A 26346849-G-A **
11019406-G-A,C ***
23272342-TTTCT-T,TTTCC 21110456-TTTCT-T,TTTCC ***
16063240-CTT-C 13951360-CTT-C ***
10689038-C-A ***
56836584-C-A ***
14397884-A-G 12277180-A-G ***
18714219-C-A 16602339-C-A ***
3809136-AT-A 3941095-AT-A 31×T***
10820459-C-A ***
17859490-C-A 15747610-C-A ***
10889897-C-T ***
10988845-T-A,C ***
17491656-C-A 15379776-C-A ***
10999945-ATTCCTTTCCA-A,ATTCCGTTCCG ***
25030342-T-C 22884195-T-C g1 ***
5127538-C-A 5259497-C-A ***
10889899-G-C ***
10746949-A-G ***
16888602-AT-A 14776722-AT-A 9×T***
5241786-T-TAC 5373745-T-TAC 16×AC***
56851411-T-A ***
23849854-G-T 21687968-G-T ***
13869149-AGAATG-A 11748443-AGAATG-A 12×GAATG******
13466493-G-T 11310817-G-T ***
23834228-AT-A,ATT 21672342-AT-A,ATT 14×T***
16063227-CT-C,CTTTCTTTCT 13951347-CT-C,CTTTCTTTCT ***
10940316-C-A ***
22977539-A-C 20815653-A-C YP853 11×ATAC***
10689029-A-T ***
21873566-CAA-C,CA 19711680-CAA-C,CA 14×A***
17029465-GAA-G 14917585-GAA-G 15×A***
8710247-G-A 8842206-G-A ***
22614437-C-A 20452551-C-A ***
11643687-T-C ***
13460979-A-T 11305303-A-T ***
15264671-T-C 13152761-T-C ***
15516766-C-A 13404886-C-A ***
13628101-T-C 11472425-T-C ***
13456632-T-TATTCC 11300956-T-TATTCC 4×ATTCC***
10939794-T-C ***
9429480-TAAAAA-T,TAAAA 9591871-TAAAAA-T,TAAAA 18×A***
10939799-C-G ***
6540091-CA-C 6672050-CA-C 10×A***
9907472-G-T 10069863-G-T ***
9859035-A-G 10021426-A-G ***
8047528-C-A 8179487-C-A ***
4377969-CTT-C,CT 4509928-CTT-C,CT 19×T***
23840783-C-CAA 21678897-C-CAA 9×A***
56851414-C-T ***
17850934-C-A 15739054-C-A ***
10992962-ACCATTCCATT-A ******
7470016-C-A 7601975-C-A IR1_L ***
7523085-C-A 7655044-C-A ***
19042775-A-G 16930895-A-G ***
7715522-C-A 7847481-C-A ***
10689051-T-C ***
22590539-C-A 20428653-C-A ***
14529234-CAA-C,CAAA 12417435-CAA-C,CAAA 15×A***
18693816-G-C 16581936-G-C ***
10842074-C-A ***
10845911-C-A ***
19231319-CTT-C,CT 17119439-CTT-C,CT 24×T***
6024536-T-TTGTGTGTG 6156495-T-TTGTGTGTG 15×TG***
28784625-G-T 26638478-G-T ***
18400835-T-C 16288955-T-C P6_Gap ***
13461061-T-C 11305385-T-C ***
20816924-CA-C,CAA 18655038-CA-C,CAA P4_Gap 22×A***
22833605-C-A 20671719-C-A ***
18209106-GTAGATAGATAGA-G 16097226-GTAGATAGATAGA-G 12×TAGA******
8779501-G-A 8911460-G-A ***
18097973-A-G 15986093-A-G ***
18052568-ATT-A,ATTT 15940688-ATT-A,ATTT 16×T***
10689062-C-A ***
13489557-T-A,G 11333881-T-A,G ***
56851422-T-A ***
20438792-C-A 18276906-C-A P5_Dst ***
56734764-C-A ***
11022413-C-CACTCT,T ***
13488851-C-G,T 11333175-C-G,T ***
9019141-G-T 9181532-G-T ***
23452074-C-A 21290188-C-A ***
8151252-AT-A 8283211-AT-A 8×T***
17238154-C-A 15126274-C-A ***
22590532-C-A 20428646-C-A ***
18556604-C-A 16444724-C-A ***
22529147-C-A 20367261-C-A ***
8333721-C-A 8465680-C-A ***
10662176-G-GCACGCCACTCCACTGCACTCCATTCCATTCCATTC ***
8878936-TAA-T 9010895-TAA-T 12×A***
8705698-CT-C,CTT 8837657-CT-C,CTT 16×T***
16620986-G-T 14509106-G-T ***
21946143-T-C 19784257-T-C ***
10689063-C-A ***
11643685-A-C ***
7131868-G-A 7263827-G-A ***
10689058-C-T ***
23633371-CTT-C,CTTT 21471485-CTT-C,CTTT 21×T***
9852671-C-A 10015062-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 760012897416173450587279253
Kit: 7600121438728590672038120744
Used in age calculations1438728590672038120744
Counts of SNPs2418
Variant counts last updated 2019-08-26 23:03:46.



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