Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > Z253 > S841 > FGC13898 > S856 > S845 > FGC8539 > FGC8561 > Z17685 > FGC20562 > BY22232

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
B180520
BigY2
B180520
56834322-C-T A*
17251895-C-CA 15140015-C-CA 11×AA*
56836724-C-T A*
3528037-T-G 3659996-T-G A*
4397212-C-T 4529171-C-T A*
28815577-G-T 26669430-G-T A*
24297919-C-G 22151772-C-G P3_t1 A*A*
14062809-C-T 11942103-C-T BY92707 YYA*
13718853-C-G 11563177-C-G A*
20885466-T-TA 18723580-T-TA P4_Dst 12×AA*
6264582-C-T 6396541-C-T IR3_Dst A*A*
5366203-A-G 5498162-A-G A*
6662383-A-G 6794342-A-G BY152438 YY++
21411585-C-T 19249699-C-T BY155026 YY++
14702390-C-A 12590456-C-A FT116830 YY+**
21652699-A-G 19490813-A-G BY134483 YY++
22444440-C-T 20282554-C-T BY168973 DYZ19 ++
22477617-T-A 20315731-T-A BY155329 DYZ19 **+
6953238-G-C 7085197-G-C BY12190 YY++
7523793-T-C 7655752-T-C BY152628 YY++
19317780-T-A 17205900-T-A BY128212 YY++
13594047-T-C 11438371-T-C BY153353 ++
18886266-A-G 16774386-A-G BY154745 YY++
14870920-G-T 12758990-G-T BY156469 YY++
3065980-T-C 3197939-T-C FT55356 +
17712574-G-T 15600694-G-T YY++
19253904-T-C 17142024-T-C FT118670 Y+
21806376-C-T 19644490-C-T FT119174 Y+
28796369-C-A 26650222-C-A **
17805523-A-AGT 15693643-A-AGT 11×GT****
19045687-C-CT 16933807-C-CT 17×T*
28793410-G-A 26647263-G-A *
6953238-G-GAC 7085197-G-GAC **
28814347-G-A 26668200-G-A ****
16564350-T-TGATAGATAGATA 14452470-T-TGATAGATAGATA 11×GATA**
11646236-C-CGGAAT *
24636349-C-CTTT 22490202-C-CTTT P3_t2 17×T*
6494962-G-T 6626921-G-T FGC40976 **
24386977-CTA-C 22240830-CTA-C **
7284322-C-A 7416281-C-A **
6419115-T-C 6551074-T-C **
21531475-T-G 19369589-T-G **
9013119-G-A 9175510-G-A **
6390046-AT-A 6522005-AT-A **
6277663-A-T 6409622-A-T IR3_Dst **
7127407-G-T 7259366-G-T **
21049197-T-G 18887311-T-G **
7221517-CA-C 7353476-CA-C **
21744149-A-G 19582263-A-G **
7302411-C-A 7434370-C-A **
9013144-G-C 9175535-G-C **
10661569-C-A **
10060911-A-T 10223302-A-T **
10060894-T-C 10223285-T-C **
20376651-A-G 18214765-A-G P5_Dst **
9966020-G-T 10128411-G-T **
9943806-C-A 10106197-C-A **
9440286-C-A 9602677-C-A **
9013114-C-T 9175505-C-T **
6277630-C-A 6409589-C-A IR3_Dst **
9013092-T-TA 9175483-T-TA **
9125627-G-T **
9108549-C-A **
8914391-C-A 9046350-C-A **
8855793-C-A 8987752-C-A **
8273996-T-A 8405955-T-A **
21028882-T-TG 18866996-T-TG P4_Dst **
16868787-A-T 14756907-A-T **
7335661-C-T 7467620-C-T **
5969635-C-A 6101594-C-A **
26500451-A-C 24354304-A-C FGC29871 P1_Y1 23×AC**
3622248-C-A 3754207-C-A **
27889275-G-T 25743128-G-T P1_Y2 **
9996626-C-A 10159017-C-A **
2914950-ACT-A 3046909-ACT-A **
10687631-A-C **
7208369-C-A 7340328-C-A **
6268767-CA-C 6400726-CA-C IR3_Dst 16×A**
10952434-CTATTA-C **
3156788-G-A 3288747-G-A **
10752782-C-A **
10952432-A-T **
3706712-TTA-T 3838671-TTA-T 8×TA**
10745008-C-A **
4902491-G-T 5034450-G-T **
7043492-G-T 7175451-G-T **
10772676-C-A **
3041257-T-TA 3173216-T-TA 9×A**
3223907-C-A 3355866-C-A **
6247038-G-T 6378997-G-T IR3_Dst **
4477660-G-T 4609619-G-T **
5869667-C-A 6001626-C-A **
5658658-C-A 5790617-C-A **
5459241-T-C 5591200-T-C **
5223040-T-G 5354999-T-G **
5096889-A-T 5228848-A-T **
4966980-C-A 5098939-C-A **
4832454-C-A 4964413-C-A **
4453915-A-G 4585874-A-G **
3259935-G-T 3391894-G-T **
4274154-G-T 4406113-G-T **
4185196-G-T 4317155-G-T **
4184929-G-T 4316888-G-T **
4042488-G-T 4174447-G-T **
3895665-C-T 4027624-C-T **
3849073-GTCTT-G 3981032-GTCTT-G **
3396738-G-T 3528697-G-T **
10667425-T-C **
10687624-CCA-C **
19739792-G-T 17627912-G-T P5_Prx **
14679022-C-A 12567088-C-A **
15584574-G-A 13472694-G-A FGC51072 **
15342596-G-A 13230715-G-A **
15264741-G-A 13152830-G-A **
15189745-G-A 13077831-G-A **
15038386-G-T 12926476-G-T **
14795677-G-T 12683748-G-T **
14643658-T-TG 12531727-T-TG **
15732119-A-G 13620239-A-G **
14537740-C-A 12425941-C-A **
14398204-A-T 12277500-A-T **
14381976-G-A 12261272-G-A FGC76658 **
14302888-C-A 12182182-C-A **
14078803-C-A 11958097-C-A **
14022067-A-C 11901361-A-C **
18355258-A-G 16243378-A-G P6_Prx **
15770648-A-G 13658768-A-G **
11668004-G-T **
16469203-G-T 14357323-G-T **
17560607-G-A 15448727-G-A **
17502650-G-T 15390770-G-T **
17104042-T-C 14992162-T-C **
16621531-T-A 14509651-T-A **
16601488-C-T 14489608-C-T **
16601474-G-T 14489594-G-T **
16450517-C-A 14338637-C-A **
15915047-C-A 13803167-C-A **
18226965-C-T 16115085-C-T **
16066419-CA-C 13954539-CA-C **
16062971-T-C 13951091-T-C **
16021095-C-A 13909215-C-A **
16004696-C-A 13892816-C-A **
16000021-G-T 13888141-G-T **
15924120-C-A 13812240-C-A **
13924830-C-A 11804124-C-A **
11662190-G-T **
10677159-C-T **
10829205-A-C **
10852700-A-C **
10852682-T-G **
10843666-C-A **
10841971-T-A **
19429840-T-C 17317960-T-C **
10830836-C-A **
10806751-C-A **
10884101-C-A **
10797316-C-A **
10776407-T-A **
10775435-C-A **
10687634-CCGAT-C **
10687632-C-CTT **
17330220-C-A 15218340-C-A **
19479114-C-A 17367234-C-A **
10856195-T-A **
10921363-C-A **
11659993-A-T **
10996973-CTCATAT-C **
11655272-G-T **
11654178-G-A **
11652506-A-G **
11027948-T-A **
11013313-G-T **
11003990-C-A **
10989208-A-T **
10923598-C-A **
10989201-C-A **
10978458-C-A **
10978418-C-A **
10973289-C-A **
10965204-T-A **
10959001-C-A **
10955742-C-A **
10988861-A-T **
3599466-C-A 3731425-C-A **
17139674-C-A 15027794-C-A **
18872329-C-CT 16760449-C-CT 9×T**
9564513-GT-G 9726904-GT-G IR3_Prx **
14644943-CTT-C 12533012-CTT-C 12×T**
10899202-TGCATC-T **
10973444-G-T **
14313664-C-A 12192958-C-A **
10673442-C-A **
17584292-C-A 15472412-C-A **
13239865-G-T 11084189-G-T **
17859909-C-T 15748029-C-T Y27899 **
16104359-T-A 13992479-T-A P8_Prx **
56681032-G-A **
56681070-A-T **
56681080-G-T **
10852690-T-A **
10885153-A-G **
11646231-T-C **
15995575-C-A 13883695-C-A **
2747818-AAT-A 2879777-AAT-A **
10751719-T-C **
28515336-C-A 26369189-C-A **
23625418-G-T 21463532-G-T **
6310838-C-A 6442797-C-A IR3_Dst **
4179020-TAAAA-T 4310979-TAAAA-T 17×A**
9722500-GAAAA-G 9884891-GAAAA-G IR3_Prx 18×A**
28505525-G-T 26359378-G-T **
4863359-G-T 4995318-G-T **
10952457-C-T **
10751703-T-G **
28613340-C-A 26467193-C-A **
13543185-C-A 11387509-C-A **
4353804-C-A 4485763-C-A **
28627640-G-T 26481493-G-T **
11032558-C-A **
10687614-T-C **
27540966-AGC-A 25394819-AGC-A P1_Y2 **
6816733-G-GT 6948692-G-GT **
11646236-C-T FGC81844 **
22253230-A-T 20091344-A-T DYZ19 **
10824144-T-TAAC **
18982547-CA-C 16870667-CA-C 39×A**
10988887-T-C **
4370333-T-A 4502292-T-A **
10909760-G-A **
9055607-C-A **
15164608-AATATAT-A 13052694-AATATAT-A 12×AT**
10686723-T-C **
19508177-CTTTTT-C 17396297-CTTTTT-C 19×T**
16562755-C-A 14450875-C-A **
10759197-A-C **
4222688-C-A 4354647-C-A **
13468252-A-G 11312576-A-G **
10824192-C-A **
10824162-C-T **
15650556-C-A 13538676-C-A **
10824156-C-T **
10824145-TCCA-T **
21830204-TC-T 19668318-TC-T **
22127975-CTTTTTT-C 19966089-CTTTTTT-C 20×T**
27540989-G-A 25394842-G-A P1_Y2 **
13228211-C-A 11072535-C-A **
11000425-T-C **
25709384-TTG-T 23563237-TTG-T P1_b3 **
11000413-C-T **
10745000-C-T **
17402473-A-AT 15290593-A-AT 9×T**
10799602-T-G **
28767088-C-CT 26620941-C-CT 8×T**
18511265-C-A 16399385-C-A P6_Dst **
16481108-C-A 14369228-C-A **
18589697-A-ATT 16477817-A-ATT 18×T**
25841780-T-A 23695633-T-A P1_b3 **
24446784-T-C 22300637-T-C **
22360191-C-T 20198305-C-T DYZ19 **
10744992-C-A **
21921992-G-A 19760106-G-A **
6773310-C-A 6905269-C-A **
21921997-A-AC 19760111-A-AC **
3106832-G-T 3238791-G-T **
22191642-TTG-T 20029756-TTG-T **
16471561-A-G 14359681-A-G **
24607226-T-TAG 22461079-T-TAG P3_t2 **
22240564-C-A 20078678-C-A DYZ19 **
14558089-C-A 12446290-C-A **
16424952-G-T 14313072-G-T **
22715129-A-C 20553243-A-C **
10989224-C-T **
7662694-C-A 7794653-C-A **
10839651-C-A **
11671155-T-C **
23600055-C-A 21438169-C-A **
21023249-G-GTTTTT 18861363-G-GTTTTT P4_Dst 14×T**
4582274-G-GT 4714233-G-GT 9×T**
15084771-C-A 12972861-C-A **
19206740-G-T 17094860-G-T **
16316741-C-A 14204861-C-A **
21754217-G-A **
10888719-A-C **
26437169-CAA-C 24291022-CAA-C P1_Y1 28×A**
7414261-G-T 7546220-G-T **
19044537-C-A 16932657-C-A **
10952427-A-C **
11026959-C-A **
14553188-C-A 12441389-C-A **
18057078-G-GT 15945198-G-GT 12×T**
17725290-C-A 15613410-C-A **
13356629-G-GA 11200953-G-GA 11×A**
10799587-C-A **
6911490-C-A 7043449-C-A **
9013127-G-A 9175518-G-A **
21853661-C-A 19691775-C-A **
10751743-T-G **
23200456-C-A 21038570-C-A **
6298495-AC-A 6430454-AC-A IR3_Dst **
14785575-C-A 12673645-C-A **
10923599-C-A **
10925008-C-A **
16104368-C-G 13992488-C-G P8_Prx **
20428142-T-TC 18266256-T-TC P5_Dst **
23048241-C-G 20886355-C-G **
9937676-C-A 10100067-C-A **
9386133-C-A 9548524-C-A **
9444876-C-A 9607267-C-A **
10921372-C-A **
6454551-C-A 6586510-C-A **
9013102-C-CA 9175493-C-CA **
10860010-C-A **
13940581-C-A 11819875-C-A **
10756234-C-T **
10657569-C-T **
58995060-G-C 56848913-G-C **
28588005-A-G 26441858-A-G **
18819576-C-A 16707696-C-A **
19059747-CTTTTTTT-C 16947867-CTTTTTTT-C 25×T**
21297349-G-T 19135463-G-T **
21616011-C-A 19454125-C-A **
22979742-C-G 20817856-C-G **
22950300-C-A 20788414-C-A **
17569251-AC-A 15457371-AC-A **
14429399-C-A 12308674-C-A **
18816852-C-A 16704972-C-A **
3046038-C-A 3177997-C-A **
15070614-CAAA-C,CA 12958705-CAAA-C,CA 20×A***
7502441-A-C 7634400-A-C IR1_L ***
21585657-C-A 19423771-C-A ***
7502437-T-C 7634396-T-C IR1_L ***
4200049-G-T 4332008-G-T ***
16050938-CTTTCTTTC-C,CTTTCTT 13939058-CTTTCTTTC-C,CTTTCTT ***
18157078-T-C 16045198-T-C ***
4948759-G-GT 5080718-G-GT 9×T***
23464688-GC-G 21302802-GC-G ***
4936080-G-GT 5068039-G-GT ***
6816546-GAAA-G,GAA 6948505-GAAA-G,GAA 22×A***
7502445-T-C 7634404-T-C IR1_L ***
23801782-C-A 21639896-C-A BY201929 ***
16354706-A-C 14242826-A-C ***
10999950-T-A,G ***
10996951-T-G ***
10996944-A-C ***
10996933-T-A ***
10996922-C-G ***
10996911-T-A ***
5170388-C-A 5302347-C-A ***
8843536-ATTTTT-A,ATTTT 8975495-ATTTTT-A,ATTTT 23×T***
3736474-A-AT 3868433-A-AT 10×T***
8468065-CAAAAAA-C 8600024-CAAAAAA-C 24×A***
10888008-A-T ***
10996904-C-A ***
19461945-C-A 17350065-C-A ***
10746894-A-T ***
10764637-T-A ***
11027086-C-G ***
14814998-CT-C 12703069-CT-C 10×T***
10935504-G-A,T ***
3706847-G-A 3838806-G-A ***
17597154-CTTT-C 15485274-CTTT-C 20×T***
4067508-CTT-C 4199467-CTT-C 29×T***
6493953-CAAAA-C 6625912-CAAAA-C 19×A***
6099384-C-CA 6231343-C-CA 17×A***
58991302-C-T 56845155-C-T ***
22113187-CAAAAAAA-C 19951301-CAAAAAAA-C 23×A***
21035031-TACA-T 18873145-TACA-T 7×ACA***
58983619-G-A 56837472-G-A ***
20574943-TG-T 18413057-TG-T P5_Dst ***
22099636-A-T 19937750-A-T ***
3999821-G-GTATA 4131780-G-GTATA 17×TA***
7255957-G-T 7387916-G-T ***
13480432-C-A 11324756-C-A ***
15588715-C-CA,CAA 13476835-C-CA,CAA 14×A***
24369455-C-A 22223308-C-A ***
11677717-G-A ***
10893718-C-A ***
10834158-T-C ***
10684308-C-A ***
10672757-A-G ***
9996591-CATATAAAAA-C 10158982-CATATAAAAA-C ***
8102558-A-G 8234517-A-G ***
7166647-T-C 7298606-T-C ***
6693353-C-A 6825312-C-A ***
6674920-A-T 6806879-A-T ***
5887747-G-T 6019706-G-T ***
10961593-A-T ***
13453339-CATT-C 11297663-CATT-C ***
10992348-T-A ***
10935618-A-ATTTAT ***
8020221-CAAAAAAAAA-C 8152180-CAAAAAAAAA-C 22×A***
10764546-TTTTC-T,TT ***
13487325-C-T 11331649-C-T ***
11671453-C-A ***
22040881-CAAAAAA-C 19878995-CAAAAAA-C 19×A***
10988572-TTCCATTCCAC-T,TTCCATTCAAC ***
10812330-C-A ***
10946019-C-A ***
13885857-CTT-C,CT 11765151-CTT-C,CT 19×T***
11015935-TGCCAT-C,CTCCAA ***
15745567-G-T 13633687-G-T ***
19399787-T-G 17287907-T-G ***
15447229-GA-G 13335349-GA-G 10×A***
5842193-C-A 5974152-C-A ***
10889266-GCCATTCCATTCCATTCCATTCCATTCCATT-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B180520958339577774267664520
Kit: B1805201503470194205578345430
Used in age calculations1503470194205578345430
Counts of SNPs1412
Variant counts last updated 2019-10-28 04:27:04.



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