Mathewson

BigY2: B193523

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > A7905 > BY152667

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

Position Blocks Names Region McDonald BED combBED STRBigY2
B193523
hg19:Y:6309077-C-T hg38:Y:6441036-C-T IR3_Dst A*
hg19:Y:18355577-T-C hg38:Y:16243697-T-C P6_Prx A*
hg19:Y:19870013-G-T hg38:Y:17758133-G-T P5_Prx A*
hg19:Y:26250800-G-A hg38:Y:24104653-G-A P1_Y1 A*
hg19:Y:17352347-G-A hg38:Y:15240467-G-A Z5930 YY+
hg19:Y:15226864-G-C hg38:Y:13114950-G-C BY100296 Y+
hg19:Y:2907595-A-G hg38:Y:3039554-A-G BY152350 YY+
hg19:Y:7123760-C-T hg38:Y:7255719-C-T BY152538 Y+
hg19:Y:7817300-A-G hg38:Y:7949259-A-G BY152723 YY+
hg19:Y:9938062-A-C hg38:Y:10100453-A-C BY153238 Y+
hg19:Y:13717183-C-T hg38:Y:11561507-C-T BY153420 DYZ17 +
hg19:Y:13802558-G-A hg38:Y:11681852-G-A BY153429 DYZ17 +
hg19:Y:15978483-T-C hg38:Y:13866603-T-C BY154020 YY+
hg19:Y:18840990-A-G hg38:Y:16729110-A-G BY154730 YY+
hg19:Y:18957076-T-C hg38:Y:16845196-T-C BY154768 YY+
hg19:Y:19414253-G-T hg38:Y:17302373-G-T BY154892 YY+
hg19:Y:21810122-C-T hg38:Y:19648236-C-T FGC79705 YY+
hg19:Y:21896707-G-A hg38:Y:19734821-G-A BY155158 YY+
hg19:Y:22298136-C-T hg38:Y:20136250-C-T DYZ19 +
hg19:Y:22446764-T-G hg38:Y:20284878-T-G BY219885 DYZ19 +
hg19:Y:22462258-T-A hg38:Y:20300372-T-A BY220849 DYZ19 +
hg19:Y:22479945-G-A hg38:Y:20318059-G-A BY224343 DYZ19 +
hg19:Y:23468106-G-A hg38:Y:21306220-G-A BY155617 YY+
hg19:Y:24477079-C-T hg38:Y:22330932-C-T Y+
hg19:Y:22340382-G-T hg38:Y:20178496-G-T BY171900 DYZ19 *
hg19:Y:14099412-C-T hg38:Y:11978706-C-T A12016A12016 **
hg19:Y:58996041-G-C hg38:Y:56849894-G-C **
hg19:Y:18989814-C-A hg38:Y:16877934-C-A **
hg19:Y:18872082-TCTTC-T hg38:Y:16760202-TCTTC-T 5×CTTC**
hg19:Y:14121412-A-G hg38:Y:12000706-A-G **
hg19:Y:22235181-C-T hg38:Y:20073295-C-T DYZ19 **
hg38:Y:10662072-G-T **
hg38:Y:10879866-C-A **
hg38:Y:56858152-C-A **
hg38:Y:10843732-A-T **
hg38:Y:10976016-C-A **
hg38:Y:10921893-C-A **
hg38:Y:10760424-C-A **
hg38:Y:10769402-T-A **
hg19:Y:6329429-C-A hg38:Y:6461388-C-A IR3_Dst **
hg38:Y:10756214-T-A **
hg19:Y:8163009-C-A hg38:Y:8294968-C-A **
hg38:Y:10826549-T-A **
hg19:Y:23801675-A-G hg38:Y:21639789-A-G **
hg38:Y:10989110-A-G **
hg19:Y:20579292-C-T hg38:Y:18417406-C-T P5_Dst **
hg38:Y:10899045-C-G **
hg38:Y:10899059-C-G **
hg38:Y:11017433-C-A **
hg19:Y:13254603-GTT-G hg38:Y:11098927-GTT-G 11×T**
hg38:Y:10882706-C-T FT219825 **
hg19:Y:2787392-T-A hg38:Y:2919351-T-A **
hg38:Y:10843712-A-C **
hg38:Y:10882702-A-T **
hg38:Y:10773696-GTTCCA-G **
hg19:Y:22316380-C-G hg38:Y:20154494-C-G DYZ19 **
hg38:Y:10826501-A-T **
hg38:Y:56849962-C-G **
hg38:Y:10974623-C-A **
hg38:Y:10754973-A-C **
hg19:Y:7231551-C-A hg38:Y:7363510-C-A **
hg19:Y:18780120-C-A hg38:Y:16668240-C-A **
hg38:Y:10843711-C-T **
hg19:Y:5869981-TC-A hg38:Y:6001940-TC-A **
hg19:Y:18756798-GTTTTT-G hg38:Y:16644918-GTTTTT-G 19×T**
hg38:Y:10931763-C-A **
hg19:Y:18737589-A-G hg38:Y:16625709-A-G **
hg19:Y:3018699-G-T hg38:Y:3150658-G-T **
hg19:Y:5543851-G-T hg38:Y:5675810-G-T **
hg19:Y:6134344-G-A hg38:Y:6266303-G-A **
hg19:Y:6312041-A-C hg38:Y:6444000-A-C IR3_Dst **
hg19:Y:6312046-A-C hg38:Y:6444005-A-C IR3_Dst **
hg19:Y:7131950-C-A hg38:Y:7263909-C-A **
hg19:Y:7321917-A-G hg38:Y:7453876-A-G **
hg19:Y:7340915-T-C hg38:Y:7472874-T-C **
hg19:Y:7385724-C-A hg38:Y:7517683-C-A **
hg19:Y:7648969-G-A hg38:Y:7780928-G-A **
hg19:Y:8151176-A-G hg38:Y:8283135-A-G **
hg19:Y:8167056-G-T hg38:Y:8299015-G-T **
hg19:Y:8216196-A-G hg38:Y:8348155-A-G **
hg19:Y:8913450-CCAGAAGGAAA-C hg38:Y:9045409-CCAGAAGGAAA-C **
hg19:Y:8973183-G-A hg38:Y:9135574-G-A **
hg19:Y:9093400-T-G hg38:Y:9255791-T-G **
hg19:Y:9994603-G-A hg38:Y:10156994-G-A **
hg38:Y:10662725-A-C **
hg38:Y:10671439-TCACTC-T **
hg38:Y:10769863-T-G **
hg38:Y:10783138-T-G **
hg38:Y:10809079-A-C **
hg38:Y:10809144-A-T **
hg38:Y:10826461-T-G **
hg38:Y:10826496-A-C **
hg38:Y:10826519-G-T **
hg38:Y:10826520-G-C **
hg38:Y:10826534-A-G **
hg38:Y:10826563-C-G **
hg38:Y:10843676-C-T **
hg38:Y:10843682-A-T **
hg38:Y:10843717-A-G **
hg38:Y:10856672-C-G **
hg38:Y:10905941-A-C **
hg38:Y:10933085-T-A **
hg38:Y:10933092-G-GCAATGT **
hg38:Y:10933108-T-C **
hg38:Y:10940408-T-TTCTAC **
hg38:Y:10945911-T-G **
hg38:Y:10949395-T-C **
hg38:Y:10950033-T-C **
hg38:Y:10967766-T-G **
hg38:Y:10971305-C-A **
hg38:Y:11003682-C-A **
hg38:Y:11005523-C-TA **
hg38:Y:11015185-C-A **
hg38:Y:11015203-T-A **
hg19:Y:13198719-T-G hg38:Y:11043043-T-G **
hg38:Y:11658085-A-C DYZ17 **
hg38:Y:11658166-T-G DYZ17 **
hg38:Y:11658181-T-G DYZ17 **
hg38:Y:11660312-G-T DYZ17 **
hg38:Y:11668661-A-G DYZ17 **
hg19:Y:13961408-A-T hg38:Y:11840702-A-T **
hg19:Y:14121402-T-C hg38:Y:12000696-T-C **
hg19:Y:14121406-T-A hg38:Y:12000700-T-A **
hg19:Y:14121409-T-A hg38:Y:12000703-T-A **
hg19:Y:14366212-C-A hg38:Y:12245507-C-A **
hg19:Y:15271013-C-T hg38:Y:13159102-C-T **
hg19:Y:15271028-A-G hg38:Y:13159117-A-G **
hg19:Y:15271035-C-T hg38:Y:13159124-C-T **
hg19:Y:15689245-C-A hg38:Y:13577365-C-A **
hg19:Y:15761335-T-C hg38:Y:13649455-T-C **
hg19:Y:15993762-T-C hg38:Y:13881882-T-C **
hg19:Y:16598561-G-T hg38:Y:14486681-G-T **
hg19:Y:17104012-C-T hg38:Y:14992132-C-T **
hg19:Y:17159780-G-T hg38:Y:15047900-G-T **
hg19:Y:17491876-C-A hg38:Y:15379996-C-A **
hg19:Y:17538466-G-T hg38:Y:15426586-G-T **
hg19:Y:17596832-TTCTC-T hg38:Y:15484952-TTCTC-T **
hg19:Y:18737585-G-A hg38:Y:16625705-G-A **
hg19:Y:19313666-T-C hg38:Y:17201786-T-C **
hg19:Y:19316052-G-C hg38:Y:17204172-G-C **
hg19:Y:19406318-T-A hg38:Y:17294438-T-A **
hg19:Y:20213048-T-C hg38:Y:18051162-T-C BY202222 P5_Dst **
hg19:Y:21138783-A-C hg38:Y:18976897-A-C **
hg19:Y:21185709-C-T hg38:Y:19023823-C-T FTB67268 **
hg19:Y:21196451-A-G hg38:Y:19034565-A-G **
hg19:Y:21318342-T-G hg38:Y:19156456-T-G **
hg19:Y:22239066-G-A hg38:Y:20077180-G-A DYZ19 **
hg19:Y:22575143-C-A hg38:Y:20413257-C-A **
hg19:Y:22710641-T-TAA hg38:Y:20548755-T-TAA 10×A**
hg19:Y:22919361-C-A hg38:Y:20757475-C-A **
hg19:Y:23061121-A-C hg38:Y:20899235-A-C **
hg19:Y:23395588-G-T hg38:Y:21233702-G-T **
hg19:Y:23412276-G-T hg38:Y:21250390-G-T **
hg19:Y:23522431-T-A hg38:Y:21360545-T-A **
hg19:Y:23544898-C-T hg38:Y:21383012-C-T **
hg19:Y:24369519-A-G hg38:Y:22223372-A-G **
hg19:Y:24402020-C-A hg38:Y:22255873-C-A FT51681 **
hg19:Y:26043519-C-A hg38:Y:23897372-C-A P1_Y1 **
hg19:Y:28500320-A-T hg38:Y:26354173-A-T **
hg19:Y:28558971-T-C hg38:Y:26412824-T-C **
hg19:Y:28586572-T-C hg38:Y:26440425-T-C FT178068 **
hg19:Y:28596906-G-T hg38:Y:26450759-G-T **
hg19:Y:28711545-G-GGTGTGT hg38:Y:26565398-G-GGTGTGT 21×GT**
hg19:Y:28742030-G-A hg38:Y:26595883-G-A **
hg38:Y:56838806-A-T **
hg38:Y:56872955-A-G **
hg38:Y2:30170-TG-T **
hg19:Y:16288096-T-A hg38:Y:14176216-T-A S2006 M12465 ***
hg19:Y:8369376-TTTA-T hg38:Y:8501335-TTTA-T 8×TTA***
hg19:Y:17859440-C-A hg38:Y:15747560-C-A ***
hg38:Y:11025431-A-C,T ***
hg19:Y:2862892-CAAA-C,CAA hg38:Y:2994851-CAAA-C,CAA 18×A***
hg19:Y:8442571-CTT-C,CT hg38:Y:8574530-CTT-C,CT 15×T***
hg19:Y:16959453-C-CAA hg38:Y:14847573-C-CAA 13×A***
hg19:Y:7321465-CAAA-C hg38:Y:7453424-CAAA-C 13×A***
hg19:Y:8658728-G-A hg38:Y:8790687-G-A ***
hg19:Y:18162897-CT-C,CTT hg38:Y:16051017-CT-C,CTT 13×T***
hg19:Y:21468272-C-A hg38:Y:19306386-C-A ***
hg38:Y:10987744-C-A ***
hg19:Y:19284009-GTATGGTATGG-G,GTATGCTATGC hg38:Y:17172129-GTATGGTATGG-G,GTATGCTATGC ***
hg19:Y:9400643-AT-A,ATT hg38:Y:9563034-AT-A,ATT 13×T***
hg19:Y:15126547-C-A hg38:Y:13014634-C-A ***
hg19:Y:22650288-C-A hg38:Y:20488402-C-A ***
hg19:Y:8843536-ATTTT-A,AT hg38:Y:8975495-ATTTT-A,AT 23×T***
hg38:Y:56835863-C-A ***
hg19:Y:3961157-C-A hg38:Y:4093116-C-A ***
hg19:Y:6434773-C-A hg38:Y:6566732-C-A ***
hg19:Y:6863818-CTTTT-C,CTTTTT hg38:Y:6995777-CTTTT-C,CTTTTT 21×T***
hg19:Y:7158392-C-A hg38:Y:7290351-C-A ***
hg19:Y:7360411-T-C hg38:Y:7492370-T-C ***
hg19:Y:9399776-T-C hg38:Y:9562167-T-C ***
hg19:Y:13254796-G-GTT hg38:Y:11099120-G-GTT 12×T***
hg19:Y:13850535-C-A hg38:Y:11729829-C-A DYZ17 ***
hg19:Y:14604590-CTTT-C,CT hg38:Y:12492792-CTTT-C,CT 21×T***
hg19:Y:14729689-TA-T,TAA hg38:Y:12617757-TA-T,TAA 12×A***
hg19:Y:14766406-CTT-C,CTTT hg38:Y:12654475-CTT-C,CTTT 13×T***
hg38:Y:12869906-TTTCCTTCCTTCCTTCCTTCC-T 14×TTCC***
hg19:Y:15018939-GT-G,GTT hg38:Y:12907028-GT-G,GTT 15×T***
hg19:Y:15778507-T-C hg38:Y:13666627-T-C ***
hg19:Y:17196624-G-A hg38:Y:15084744-G-A ***
hg19:Y:18397183-C-A hg38:Y:16285303-C-A P6_Gap ***
hg19:Y:20803524-TCATATTACTATTAA-T hg38:Y:18641638-TCATATTACTATTAA-T P4_Gap ***
hg19:Y:21691550-A-G hg38:Y:19529664-A-G ***
hg19:Y:22834711-C-A hg38:Y:20672825-C-A ***
hg19:Y:22962303-C-A hg38:Y:20800417-C-A ***
hg19:Y:23025216-C-A hg38:Y:20863330-C-A ***
hg19:Y:23514561-T-TTC hg38:Y:21352675-T-TTC ***
hg19:Y:23856932-G-A hg38:Y:21695046-G-A ***
hg19:Y:23858684-C-CA hg38:Y:21696798-C-CA 9×A***
hg19:Y:24359441-G-GAA hg38:Y:22213294-G-GAA 10×A***
hg19:Y:28596924-CAA-C hg38:Y:26450777-CAA-C ***
hg19:Y:28596934-C-A hg38:Y:26450787-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B193523896121973556597293780
Used in age calculations896121973556597293780
Counts of SNPs1311
Variant counts last updated 2025-09-18 02:54:21.


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