Tree Position

R-M269 > L23 > Z2103 > Z2106 > BY41458 > Y18961

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
95535
25857230-C-T 23711083-C-T P1_Y1 A*
18374108-A-G 16262228-A-G P6_Prx A*
25970049-A-C 23823902-A-C P1_Y1 A*
28816818-G-C 26670671-G-C A*
6308698-C-G 6440657-C-G IR3_Dst A*
20748528-G-A 18586642-G-A P4_Prx A*
20650558-A-AT 18488672-A-AT P4_Prx 17×TA*
24208164-G-A 22062017-G-A P3_b1 A*
17566315-T-C 15454435-T-C BY154407 YY+
17913438-C-A 15801558-C-A BY154505 YY+
17927031-A-C 15815151-A-C BY154510 YY+
17949388-TA-T 15837508-TA-T +
19513733-G-A 17401853-G-A YY+
18346440-C-T 16234560-C-T BY154625 P6_Prx +
19270670-G-A 17158790-G-A BY154850 YY+
16906758-A-T 14794878-A-T A17383 YY+
22238122-C-T 20076236-C-T BY213770 DYZ19 +
21905766-G-A 19743880-G-A BY155160 YY+
22273027-T-C 20111141-T-C BY215511 DYZ19 +
17197639-GC-G 15085759-GC-G +
19076-T-C +
8272892-G-A 8404851-G-A BY152859 YY+
16565964-C-T 14454084-C-T BY154152 YY+
22459806-A-C 20297920-A-C BY220393 DYZ19 +
16179119-C-T 14067239-C-T FGC10329 Y+
15751079-A-G 13639199-A-G BY153962 YY+
15608735-C-T 13496855-C-T BY153924 YY+
15501921-T-C 13390041-T-C BY153885 YY+
15307578-C-T 13195680-C-T BY153845 YY+
15272684-T-C 13160773-T-C BY153840 YY+
14406887-G-T 12286185-G-T BY153638 YY+
2760373-ATTGT-A 2892332-ATTGT-A +
6154063-A-C 6286022-A-C BY152403 IR3_Dst +
9160340-C-T 9322731-C-T BY153135 +
8048005-G-C 8179964-G-C BY152786 YY+
8752960-G-A 8884919-G-A BY153025 YY+
22445325-G-T 20283439-G-T BY219600 DYZ19 +
17191340-A-G 15079460-A-G BY154318 YY+
8462956-T-C 8594915-T-C BY152928 YY+
23408959-T-A 21247073-T-A BY155602 YY+
9384243-C-G 9546634-C-G BY64204Z44888 Y+
22902251-G-GA 20740365-G-GA A744 9×A+
22512361-G-A 20350475-G-A BY225852 DYZ19 +
9850653-T-C 10013044-T-C M9063 YSC0001322 PF4522 YY+
7690854-G-A 7822813-G-A ZS4109 YY+
23807274-C-G 21645388-C-G BY155696 Y+
23124340-T-A 20962454-T-A BY155519 YY+
22937273-G-A 20775387-G-A BY20676CTS11080 YY+
22513571-G-C 20351685-G-C BY155354 Y+
22549703-C-T 20387817-C-T BY155359 YY+
15275088-C-T 13163177-C-T Y40907 YY+
9384255-A-C 9546646-A-C BY64204FGC33853 Y+
23746843-T-C 21584957-T-C BY155679 Y+
13253396-G-GTTTT,GTTTTT 11097720-G-GTTTT,GTTTTT 12×T*
13458441-G-GATTCC 11302765-G-GATTCC 7×ATTCC*
3606975-G-T 3738934-G-T **
3390470-C-T 3522429-C-T **
3063202-C-A 3195161-C-A **
3780885-C-A 3912844-C-A **
3012164-C-T 3144123-C-T **
4008712-C-A 4140671-C-A **
3550607-C-A 3682566-C-A **
56845225-C-A **
2845821-CAAAA-C 2977780-CAAAA-C 28×A**
2744752-G-T 2876711-G-T **
4952499-G-T 5084458-G-T **
13857840-C-A 11737134-C-A FT89181 **
9110325-G-T **
10928819-CACCCA-C **
10928820-A-T **
10756990-G-T **
28660890-C-A 26514743-C-A **
10859310-C-A **
10924512-C-A **
15696939-A-C 13585059-A-C **
4536777-C-A 4668736-C-A **
5758303-C-A 5890262-C-A **
4996894-A-T 5128853-A-T **
6665450-T-A 6797409-T-A **
8076854-T-A 8208813-T-A **
8076851-G-C 8208810-G-C **
13457691-C-A 11302015-C-A **
14366695-C-A 12245990-C-A **
7990370-G-A 8122329-G-A **
7423831-C-A 7555790-C-A **
7274951-C-A 7406910-C-A **
7221354-G-A 7353313-G-A **
7098702-T-TA 7230661-T-TA **
6791770-G-A 6923729-G-A **
6641369-C-A 6773328-C-A **
5066097-A-G 5198056-A-G **
6466126-C-A 6598085-C-A **
56843007-G-T **
6073073-C-A 6205032-C-A **
5923769-C-A 6055728-C-A **
5832308-G-T 5964267-G-T **
5829148-T-A 5961107-T-A **
10795569-C-A **
5659184-G-T 5791143-G-T **
5274961-T-A 5406920-T-A **
5199439-G-T 5331398-G-T **
10028568-C-A 10190959-C-A **
10997718-C-CT **
10795023-A-G **
10869048-C-CT **
56845402-C-A **
7098709-CAA-C 7230668-CAA-C **
10851005-C-T **
10964694-T-C **
11026037-C-A **
56841967-C-A **
7256026-G-T 7387985-G-T **
13805256-C-A 11684550-C-A **
13570916-C-A 11415240-C-A **
10795066-C-G **
10869039-ATTCCAT-A **
18864743-C-A 16752863-C-A **
10795096-C-T **
13209647-G-A 11053971-G-A BY163447 **
18423905-G-A 16312025-G-A P6_Gap **
10927896-T-C **
10889299-A-T **
10824436-C-A **
11033937-G-A **
22993426-C-A 20831540-C-A **
4931960-G-T 5063919-G-T **
7197326-C-A 7329285-C-A **
10756988-C-T **
10938773-C-A **
24296456-AACAC-A 22150309-AACAC-A P3_t1 **
10799626-A-T **
15070442-A-G 12958533-A-G **
15070441-C-T 12958532-C-T **
25963867-CT-C 23817720-CT-C P1_Y1 34×T**
10927894-C-T **
7196248-C-A 7328207-C-A **
20424877-G-T 18262991-G-T P5_Dst **
14574057-C-A 12462257-C-A **
16344636-C-A 14232756-C-A **
14846849-C-A 12734915-C-A **
14270528-C-A 12149822-C-A **
20733589-C-A 18571703-C-A P4_Prx **
21394844-C-A 19232958-C-A **
21545376-T-C 19383490-T-C **
24305273-A-AC 22159126-A-AC P3_t1 **
21299354-C-T 19137468-C-T **
16968297-C-A 14856417-C-A **
24869984-C-A 22723837-C-A IR1_R **
10748697-C-T **
22067573-C-A 19905687-C-A **
10795051-G-C **
8076855-T-A 8208814-T-A **
5613329-C-A 5745288-C-A **
14076671-T-C 11955965-T-C **
10794893-G-A **
8173801-C-A 8305760-C-A **
17244937-C-A 15133057-C-A **
19187418-TTCC-T 17075538-TTCC-T **
18858541-G-A 16746661-G-A **
18848990-A-T 16737110-A-T **
18780299-T-C 16668419-T-C **
18650486-C-A 16538606-C-A **
18379036-C-A 16267156-C-A P6_Prx **
18071938-GAACATGGATGA-G 15960058-GAACATGGATGA-G **
17740758-TG-T 15628878-TG-T **
17667057-G-T 15555177-G-T **
17501813-T-A 15389933-T-A **
17218229-C-A 15106349-C-A **
19644626-G-T 17532746-G-T P5_Prx **
17027698-C-A 14915818-C-A **
16750123-C-A 14638243-C-A **
16504973-G-T 14393093-G-T **
16274222-C-A 14162342-C-A **
16246065-C-T 14134185-C-T **
15076431-T-A 12964521-T-A **
15012701-G-A 12900789-G-A **
14910883-C-A 12798950-C-A **
14867100-T-A 12755170-T-A **
14553178-C-A 12441379-C-A **
19249525-T-C 17137645-T-C **
19982554-CTTTT-C 17870674-CTTTT-C P5_Prx 14×T**
14470592-G-T 12349861-G-T **
25592906-A-C 23446759-A-C P1_gr1 **
56871549-C-A **
28784612-T-G 26638465-T-G **
28703414-T-C 26557267-T-C **
28581080-C-A 26434933-C-A **
28567941-G-T 26421794-G-T **
28548640-C-T 26402493-C-T FT120037 **
28525081-G-A 26378934-G-A **
28345657-C-A 26199510-C-A P1_gr2 **
27692888-G-T 25546741-G-T P1_Y2 **
27461934-ATT-A 25315787-ATT-A P1_Y2 **
24384937-G-T 22238790-G-T **
20554613-C-A 18392727-C-A P5_Dst **
23825112-C-A 21663226-C-A **
23392234-C-A 21230348-C-A **
23138717-C-T 20976831-C-T **
23062685-G-T 20900799-G-T **
22489598-C-T 20327712-C-T DYZ19 **
22472414-G-C 20310528-G-C DYZ19 **
22366284-T-A 20204398-T-A DYZ19 **
21999948-C-A 19838062-C-A **
21514076-C-A 19352190-C-A **
21285598-G-A 19123712-G-A FT118937 **
21208530-C-A 19046644-C-A **
14520856-A-T 12409057-A-T **
14395131-C-A 12274427-C-A **
8761964-C-A 8893923-C-A **
10751193-C-A **
10796670-T-TCCTGTA **
10795088-A-T **
7717787-T-C 7849746-T-C FGC31171 ZS5528 5×CTTC**
10792493-C-A **
10776732-T-A **
10776725-T-A **
10756984-C-G **
10756979-C-T **
10756959-C-T **
10754024-G-A **
10750936-T-G **
10801655-T-C **
10750114-T-C **
10688152-C-T **
10657082-C-A **
10008147-C-G 10170538-C-G **
9714734-A-T 9877125-A-T IR3_Prx **
9714713-C-T 9877104-C-T IR3_Prx **
9654239-C-A 9816630-C-A IR3_Prx **
9186254-C-A 9348645-C-A **
9063171-G-A 9225562-G-A **
8902007-TTTTG-T 9033966-TTTTG-T **
10799613-T-A **
10801675-T-C **
14301722-C-A 12181016-C-A **
13694141-G-A 11538465-G-A **
14270511-C-T 12149805-C-T FT116581 **
14193004-T-C 12072298-T-C **
14098688-ATCCTCCAGGT-A 11977982-ATCCTCCAGGT-A **
14021490-C-A 11900784-C-A **
13971305-G-T 11850599-G-T **
13855101-C-A 11734395-C-A **
11675475-C-A **
11670753-G-T **
11659521-G-C **
11650481-T-A **
13466343-G-C 11310667-G-C **
10801710-TC-T **
13441846-A-T 11286170-A-T **
13298699-C-A 11143023-C-A **
11033947-C-A **
11020140-C-CAATTA **
11005503-C-A **
10975878-C-A **
10954966-C-A **
10932682-G-T **
10925816-C-A **
10925053-C-A **
10846713-G-T **
9321740-C-T 9484131-C-T **
9956464-C-A 10118855-C-A **
10748651-T-C **
18346526-C-A 16234646-C-A P6_Prx **
11022022-A-T **
10693442-ATTCT-A **
10797907-T-C **
10801687-C-T **
20579119-CAT-C 18417233-CAT-C P5_Dst **
10927253-C-A **
10927238-C-A **
10927236-T-G **
10795020-A-G **
15500616-C-A 13388736-C-A **
6374130-G-T 6506089-G-T **
11022038-T-C **
11033936-T-C **
10882027-G-C **
11012311-T-A **
11012310-T-C **
11015192-T-C **
23435682-CTTTTTT-C 21273796-CTTTTTT-C 21×T**
13486638-A-T 11330962-A-T **
13486628-A-T 11330952-A-T **
13486627-A-C 11330951-A-C **
10979965-AATTCC-A **
11022031-C-A **
11022060-C-T **
15242602-C-A 13130688-C-A **
4101096-C-A 4233055-C-A **
10767905-T-TCAC **
10767890-A-ACTCTC **
10767868-T-A **
10825245-C-T **
10760009-C-A **
4243010-C-A 4374969-C-A **
23204441-C-A 21042555-C-A FT11103 **
9952215-C-A 10114606-C-A **
10882030-C-T **
19476468-C-A 17364588-C-A **
11034921-C-G **
11022072-ACTCCT-A **
11034915-C-T **
11034909-G-C **
11034835-A-T **
11034824-C-A **
10655092-T-C **
10655086-T-C **
10887127-G-T **
10927846-C-T **
19600525-G-T 17488645-G-T P5_Prx **
10825252-T-G **
10896380-C-T **
13474529-G-C 11318853-G-C **
10767924-T-A **
7018027-A-AT 7149986-A-AT 24×T**
18794908-T-TA 16683028-T-TA 10×A**
16679404-A-AT 14567524-A-AT 18×T**
13803293-G-T 11682587-G-T **
13486589-C-T 11330913-C-T **
9519814-T-C 9682205-T-C BY42829 **
58984651-G-T 56838504-G-T **
28617703-T-G 26471556-T-G **
13457680-C-G 11302004-C-G **
10051788-C-A 10214179-C-A **
4145833-TTC-T 4277792-TTC-T **
25592904-A-C 23446757-A-C FT461308 P1_gr1 **
18636612-CTTT-C 16524732-CTTT-C 17×T**
21283207-T-TA 19121321-T-TA 8×A**
15262458-C-CAAA 13150542-C-CAAA 30×A**
7009185-TTC-T 7141144-TTC-T **
22092601-C-CTTTATTTA 19930715-C-CTTTATTTA 12×TTTA**
13394839-CGG-C 11239163-CGG-C 13×G**
14848913-C-CT 12736979-C-CT 14×T**
28370015-T-TAG 26223868-T-TAG P1_gr2 16×AG**
28784634-T-C 26638487-T-C **
23377534-TA-T 21215648-TA-T 9×A**
13839814-T-A 11719108-T-A **
5273214-C-CT 5405173-C-CT 23×T**
13474498-C-G 11318822-C-G **
13474511-A-T 11318835-A-T **
10986389-C-T **
13474509-T-G 11318833-T-G **
13474503-G-A 11318827-G-A **
13474476-G-A 11318800-G-A **
10958503-T-TTCTAA **
10814463-T-TATTCC **
20424872-G-T 18262986-G-T P5_Dst **
11012292-C-G **
10799597-T-C **
28758232-C-A 26612085-C-A **
10986393-C-G **
56843062-G-A **
21078733-G-T 18916847-G-T **
19600474-G-T 17488594-G-T P5_Prx **
10893952-C-A BY83961 **
10893951-T-C BY83960 **
10889798-T-C **
10889794-C-G **
10889775-C-CTCTTGGGTGG **
13705506-G-T 11549830-G-T **
10973966-CCACT-C **
13486640-T-A 11330964-T-A **
9956364-T-TA 10118755-T-TA 16×A**
21599252-G-GA 19437366-G-GA 11×A**
10767907-A-ACT **
10655078-C-A **
11031360-C-A **
6911241-C-A 7043200-C-A **
10748713-GTTCTTTTCCA-G **
10929175-TCTGCTGC-T **
18188051-C-A 16076171-C-A **
10929173-T-A **
10929151-T-TA **
10796690-T-A **
13839810-G-A 11719104-G-A **
10757005-A-C **
10658611-T-A **
8076856-T-A 8208815-T-A **
10889778-T-C **
10882062-T-C **
19682174-CAA-C 17570294-CAA-C P5_Prx 30×A**
10786433-T-C **
10786457-A-G **
10786458-T-G **
11023009-T-C **
14846833-A-G 12734899-A-G **
18858548-A-G 16746668-A-G **
6751577-C-A 6883536-C-A **
7235830-TG-T 7367789-TG-T **
10801674-T-C **
10748706-T-C **
10929726-C-A **
22204383-G-T 20042497-G-T **
18210270-ATTTTTT-A 16098390-ATTTTTT-A 18×T**
27894290-A-T 25748143-A-T P1_Y2 **
5011422-C-A 5143381-C-A **
10691109-C-CTTCAG **
10691087-G-A **
10964689-C-T FT255317 **
10748669-TTCCAC-T **
10756995-G-C **
21412261-CTT-C 19250375-CTT-C 36×T**
15899064-TAA-T 13787184-TAA-T 11×A**
10748698-G-T **
10801647-G-C **
17622750-C-A 15510870-C-A FTB37304 **
10748699-C-T **
24631267-TG-T 22485120-TG-T P3_t2 **
16868631-G-GTA 14756751-G-GTA **
16739069-GAA-G 14627189-GAA-G 17×A**
22080545-C-A 19918659-C-A **
10992285-C-A **
10786462-A-C **
15268881-C-A 13156970-C-A **
24631265-TG-T 22485118-TG-T P3_t2 **
10992286-C-G **
13457696-C-T 11302020-C-T **
10928846-C-T **
23435711-A-G 21273825-A-G **
11020145-C-G **
23786415-C-A 21624529-C-A **
7396388-C-A 7528347-C-A **
10889785-C-A **
10997705-T-A **
16062182-C-A 13950302-C-A **
23838883-C-A 21676997-C-A **
17703309-T-G 15591429-T-G **
13811116-A-G 11690410-A-G **
5869982-CTT-C 6001941-CTT-C 11×T**
13474451-G-T 11318775-G-T **
13474449-G-A 11318773-G-A **
7172494-G-T 7304453-G-T **
10907654-C-A **
13989068-C-A 11868362-C-A **
13457700-C-G 11302024-C-G **
4087908-C-A 4219867-C-A **
7256115-G-T 7388074-G-T **
10992303-T-G **
10927854-C-T **
19252995-G-T 17141115-G-T **
9799134-CAAAAAAA-C 9961525-CAAAAAAA-C 24×A**
10929189-C-A **
9436804-C-A 9599195-C-A **
14180896-C-A 12060190-C-A **
4527412-C-A 4659371-C-A **
58985639-A-G 56839492-A-G ***
13487805-T-C 11332129-T-C ***
13463321-C-A 11307645-C-A ***
17463348-T-A 15351468-T-A FTB33688 ***
23823660-C-T 21661774-C-T BY148067 ***
58983637-C-A 56837490-C-A ***
21225071-C-A 19063185-C-A ***
17050099-C-CT 14938219-C-CT 15×T***
14236026-C-CA 12115320-C-CA 16×A***
13478222-C-A 11322546-C-A ***
17645489-AATTT-A 15533609-AATTT-A 11×ATTT***
13488490-G-T 11332814-G-T ***
13447106-CT-C 11291430-CT-C ***
58985598-G-A 56839451-G-A ***
58985571-T-C 56839424-T-C ***
22287622-T-A 20125736-T-A FT454991 DYZ19 ***
17946903-G-T 15835023-G-T M4863 11×T***
58985556-G-A 56839409-G-A ***
13869200-G-A 11748494-G-A ***
58985636-C-G 56839489-C-G ***
10997720-AT-A ***
58981213-C-CTCCAT 56835066-C-CTCCAT ***
58981901-C-A 56835754-C-A ***
13463337-G-T 11307661-G-T ***
21177231-C-T 19015345-C-T ***
10866048-C-T FT46931 ***
4995702-C-A 5127661-C-A ***
56839459-TG-T ***
10880381-G-A,C ***
10807343-A-C ***
10999879-C-A ***
10682505-TCCA-T ***
10934823-T-G ***
10999905-A-G ***
10973960-C-T ***
11642951-C-A ***
10997746-T-A FT439732 ***
13461013-T-A,C 11305337-T-A,C ***
16188181-CTTTT-C 14076301-CTTTT-C 16×T***
10925501-T-C,G ***
4521612-TAAAAA-T,TAAA 4653571-TAAAAA-T,TAAA 17×A***
10769821-C-A ***
10967543-C-A ***
10807316-G-A ***
56833358-C-G,T ***
15477291-CAAAA-C,CAAA 13365411-CAAAA-C,CAAA 18×A***
10807306-G-A ***
10807336-TCA-T ***
6434951-CT-C 6566910-CT-C 10×T***
56839462-T-TCC ***
14261737-TAA-T 12141031-TAA-T 11×A***
10807307-A-G ***
10807291-C-A ***
10758035-C-T ***
13486583-A-G 11330907-A-G ***
10967557-A-C FGC78181 ***
13869183-T-TC 11748477-T-TC ***
15423474-C-CAA 13311594-C-CAA 16×A***
10760367-C-A,T ***
16702210-C-A 14590330-C-A ***
16749737-TTTT-T,TTTG 14637857-TTTT-T,TTTG ***
16333531-C-A 14221651-C-A ***
13461035-T-A 11305359-T-A ***
11676777-G-T ***
56829970-CTCCAATCCAT-C,CTCCACTCCAATCCGT ***
16730003-GAAAA-G 14618123-GAAAA-G 17×A***
19054342-CTTTT-C 16942462-CTTTT-C 16×T***
13372059-C-A 11216383-C-A ***
5562678-C-A 5694637-C-A ***
16354680-G-T 14242800-G-T ***
11676451-C-T ***
10997747-T-A ***
56839379-G-T ***
56839402-G-A ***
56839421-A-T ***
56839445-G-A ***
10790281-T-C ***
11033840-CTGCTC-C,CCACTG ***
7131859-C-A 7263818-C-A ***
13447102-C-CA 11291426-C-CA ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 95535951580277785117677638
Used in age calculations951580277785117677638
Counts of SNPs3028
Variant counts last updated 2022-07-13 03:00:32.



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