Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > Z56 > BY3548 > Z43/S366 > ~19904794-T-C

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
19877051-C-T 17765171-C-T P5_Prx A*
6305859-C-T 6437818-C-T IR3_Dst A*
16120232-T-A 14008352-T-A P8_Prx A*A*
18301463-A-T 16189583-A-T P6_Prx A*A*
19933648-A-G 17821768-A-G P5_Prx A*A*
22283197-G-T 20121311-G-T DYZ19 A*
28816545-A-C 26670398-A-C A*A*
28817570-A-G 26671423-A-G A*A*
19729672-T-C 17617792-T-C P5_Prx A*
20246127-T-C 18084241-T-C P5_Dst A*
26356953-G-A 24210806-G-A P1_Y1 A*
26411887-G-C 24265740-G-C P1_Y1 A*
17217445-A-G 15105565-A-G FT96765 YY+**
6835997-G-A 6967956-G-A BY61591 YY++
6877204-T-C 7009163-T-C BY61927 YY++
7528579-G-A 7660538-G-A BY65681 YY++
7841889-T-G 7973848-T-G BY68129 YY++
8321410-G-A 8453369-G-A BY71692 YY++
14747644-T-TA 12635713-T-TA **+
15077289-C-T 12965379-C-T BY99608 YY++
15557470-A-T 13445590-A-T BY102522 YY++
15603544-G-T 13491664-G-T YY++
15881309-T-C 13769429-T-C BY104737 YY++
16911322-G-C 14799442-G-C BY111042 YY++
17396312-T-C 15284432-T-C BY114426 YY++
18105098-C-T 15993218-C-T BY120055 YY++
18665769-C-T 16553889-C-T BY122958 YY++
18883959-T-C 16772079-T-C BY124482 YY++
19034871-A-G 16922991-A-G BY125662 YY++
19490657-G-A 17378777-G-A BY129508 Y++
21252398-G-A 19090512-G-A BY131426 YY++
21665189-T-C 19503303-T-C BY134613 YY++
21811584-A-C 19649698-A-C BY135605 YY++
22208039-C-T 20046153-C-T BY138473 YY++
22461862-C-G 20299976-C-G FT8621FT457844 DYZ19 **+
22463700-G-T 20301814-G-T BY221170 DYZ19 **+
22474918-G-T 20313032-G-T BY223245 DYZ19 **+
23246240-A-C 21084354-A-C BY144047 YY++
23507222-C-G 21345336-C-G BY145847 YY++
23842525-C-T 21680639-C-T BY148260 Y++
28542833-C-T 26396686-C-T FT97346 +**
28658939-C-T 26512792-C-T BY150866 Y++
18515-C-G **+
3523727-G-A 3655686-G-A FT95062 +
3789000-G-A 3920959-G-A FT95155 +
4811370-G-A 4943329-G-A FT95501 +
5672394-G-A 5804353-G-A FT95813 +
10967661-C-A FT165219 +
13954282-TAC-T 11833576-TAC-T +
14295499-C-G 12174793-C-G FT96443 YY+
16031730-T-C 13919850-T-C FT96645 Y+
18565363-A-C 16453483-A-C FT452155 YY+
22319466-G-A 20157580-G-A BY47933 DYZ19 **
22490319-A-C 20328433-A-C DYZ19 *
22490326-T-G 20328440-T-G DYZ19 *
22319255-T-A 20157369-T-A DYZ19 ****
22255348-G-A 20093462-G-A DYZ19 **
22429206-T-A 20267320-T-A BY23162 DYZ19 ***
22429207-C-A 20267321-C-A BY23163 DYZ19 ***
4039682-G-GT 4171641-G-GT *
22559136-C-A 20397250-C-A BY20144A5403 **
7318490-TTTTATTTA-T 7450449-TTTTATTTA-T 11×TTTA**
6795160-A-G 6927119-A-G **
9971695-C-A 10134086-C-A **
14589433-C-A 12477633-C-A **
7238278-G-T 7370237-G-T **
14537921-C-A 12426122-C-A **
14462723-C-A 12341996-C-A **
13940975-C-A 11820269-C-A **
9211559-C-A 9373950-C-A **
8058613-C-A 8190572-C-A **
18447621-G-GTTT 16335741-G-GTTT P6_Dst 18×T**
18328804-C-AAA 16216924-C-AAA P6_Prx **
10935556-C-CCTTTT **
19035994-C-A 16924114-C-A **
22230700-G-T 20068814-G-T DYZ19 **
16428017-G-T 14316137-G-T **
10789692-C-A **
15577028-C-A 13465148-C-A **
7078277-G-T 7210236-G-T **
28640476-C-A 26494329-C-A **
18522333-C-A 16410453-C-A P6_Dst **
19932018-T-TC 17820138-T-TC P5_Prx **
14522226-C-A 12410427-C-A **
6429647-C-A 6561606-C-A **
11037062-C-G **
6114097-C-A 6246056-C-A **
9855928-C-A 10018319-C-A **
20815608-C-A 18653722-C-A P4_Gap **
5698841-C-T 5830800-C-T **
14462718-C-T 12341991-C-T Z21316 **
4900861-G-A 5032820-G-A **
21563694-C-A 19401808-C-A **
17492314-C-A 15380434-C-A **
11022295-C-A **
58982028-C-T 56835881-C-T **
13708910-A-T 11553234-A-T **
6273858-AC-A 6405817-AC-A IR3_Dst **
23778213-A-T 21616327-A-T **
10807364-C-A **
5458686-C-A 5590645-C-A **
28707769-G-T 26561622-G-T **
19463851-C-A 17351971-C-A **
19061250-C-A 16949370-C-A **
6403576-C-A 6535535-C-A **
14779453-C-A 12667523-C-A **
6795143-A-T 6927102-A-T **
6795143-A-ATG 6927102-A-ATG **
6795154-AG-A 6927113-AG-A **
16292056-C-A 14180176-C-A **
19537883-C-A 17426003-C-A **
14462732-C-T 12342005-C-T **
14462733-A-G 12342006-A-G **
17871032-C-A 15759152-C-A **
3045806-C-A 3177765-C-A **
13859547-A-T 11738841-A-T **
22658337-C-A 20496451-C-A **
13644772-C-A 11489096-C-A **
10935524-TTCCAC-T **
14364752-C-A 12244047-C-A **
27700000-T-A 25553853-T-A P1_Y2 **
17387354-C-A 15275474-C-A **
10969276-C-T **
5060261-C-A 5192220-C-A **
15394220-C-A 13282340-C-A **
18753097-G-T 16641217-G-T **
19129192-A-G 17017312-A-G **
10950878-T-A **
10685804-T-A **
23412148-C-A 21250262-C-A **
10826563-C-A **
10981323-C-A FT439054 **
17686734-C-A 15574854-C-A **
10972958-T-A **
10952794-C-A **
7190601-C-A 7322560-C-A **
9983139-C-A 10145530-C-A **
17360959-C-A 15249079-C-A **
2752966-C-A 2884925-C-A **
2812887-C-A 2944846-C-A **
2884211-A-C 3016170-A-C **
2885810-A-T 3017769-A-T **
3099198-G-T 3231157-G-T **
3492632-G-A 3624591-G-A **
3531206-C-A 3663165-C-A **
3791377-C-A 3923336-C-A **
4375913-C-T 4507872-C-T **
5013863-C-A 5145822-C-A **
5161733-G-T 5293692-G-T **
5358979-G-A 5490938-G-A **
5367133-C-A 5499092-C-A **
5690970-G-T 5822929-G-T **
5724134-G-T 5856093-G-T **
6091499-G-T 6223458-G-T **
6114871-C-T 6246830-C-T **
6523595-T-C 6655554-T-C **
6815482-C-A 6947441-C-A **
6847984-C-A 6979943-C-A **
6861463-C-T 6993422-C-T **
6889139-A-C 7021098-A-C **
7017975-C-A 7149934-C-A **
7028402-C-A 7160361-C-A **
7086783-C-A 7218742-C-A **
7093181-C-A 7225140-C-A **
7330383-C-A 7462342-C-A **
7590447-G-T 7722406-G-T **
7608434-TCC-T 7740393-TCC-T **
7641139-C-A 7773098-C-A **
7916994-C-A 8048953-C-A **
7925971-T-G 8057930-T-G **
7986648-C-A 8118607-C-A **
8067515-C-A 8199474-C-A **
8102617-T-C 8234576-T-C **
8139756-G-T 8271715-G-T **
8170463-C-A 8302422-C-A **
8835163-C-A 8967122-C-A **
9446135-T-C 9608526-T-C **
9880701-C-T 10043092-C-T FTB48172 **
9941324-A-C 10103715-A-C **
10067263-G-T 10229654-G-T **
10668760-C-A FT428772 **
10677623-T-G **
10685552-C-A **
10685807-C-CTGTTG **
10770457-A-TT **
10770458-GCA-G **
10826545-A-T **
10866996-C-A **
10873205-CTCCAT-C **
10900974-C-A **
10935535-T-G **
10935536-C-T **
10940453-C-T **
10944961-C-A **
10952445-C-A **
10973541-C-T **
10993142-C-A **
11016211-C-A **
13213972-A-T 11058296-A-T **
13282363-C-A 11126687-C-A **
13460664-C-A 11304988-C-A **
13507085-G-A 11351409-G-A **
11653605-T-A **
13866819-G-T 11746113-G-T **
13874708-C-T 11754002-C-T **
14033865-T-C 11913159-T-C FT224104 8×AC**
14038301-G-A 11917595-G-A **
14106908-G-T 11986202-G-T **
14114984-C-A 11994278-C-A **
14364090-C-A 12243385-C-A **
14430377-G-A 12309650-G-A **
14567791-G-T 12455991-G-T **
14569383-G-T 12457583-G-T **
14826007-G-C 12714074-G-C **
14844524-C-A 12732590-C-A **
14927282-C-A 12815347-C-A **
15280883-A-C 13168982-A-C **
16047815-C-A 13935935-C-A **
16171090-C-A 14059210-C-A **
16199557-T-C 14087677-T-C **
16571765-A-C 14459885-A-C **
16624751-C-A 14512871-C-A **
16964115-C-A 14852235-C-A **
17201861-C-A 15089981-C-A **
17201864-C-G 15089984-C-G **
17280048-C-A 15168168-C-A **
18008688-GTT-G 15896808-GTT-G P7_Dst 17×T**
18008724-C-G 15896844-C-G P7_Dst **
18035965-C-A 15924085-C-A **
18232061-G-C 16120181-G-C **
18661980-A-C 16550100-A-C **
19433159-A-C 17321279-A-C **
19746867-G-T 17634987-G-T P5_Prx **
19827471-G-C 17715591-G-C P5_Prx **
19885239-C-A 17773359-C-A P5_Prx **
20516335-C-A 18354449-C-A P5_Dst **
20774761-A-C 18612875-A-C P4_Prx **
20895266-C-T 18733380-C-T P4_Dst **
21141398-T-C 18979512-T-C **
21344158-C-A 19182272-C-A **
21456084-A-G 19294198-A-G **
21584135-C-T 19422249-C-T **
23476296-T-C 21314410-T-C **
23483453-C-A 21321567-C-A **
23579430-C-A 21417544-C-A **
23742278-C-G 21580392-C-G **
24295366-C-A 22149219-C-A P3_t1 **
24295385-C-CAA 22149238-C-CAA P3_t1 **
24390029-C-T 22243882-C-T **
24595253-C-A 22449106-C-A P3_t2 **
28086312-C-A 25940165-C-A P1_Y2 **
28086327-C-A 25940180-C-A P1_Y2 **
28086342-C-A 25940195-C-A P1_Y2 **
28086353-G-T 25940206-G-T P1_Y2 **
28598860-C-A 26452713-C-A **
28687995-C-A 26541848-C-A **
28764366-G-A 26618219-G-A **
56827466-C-A **
18050048-AAT-A 15938168-AAT-A 19×AT**
20932612-G-T 18770726-G-T P4_Dst 17×A**
6150296-A-C 6282255-A-C IR3_Dst **
6225916-T-G 6357875-T-G IR3_Dst **
6624648-C-T 6756607-C-T **
13480934-T-C 11325258-T-C **
15803697-G-T 13691817-G-T **
19743846-C-A 17631966-C-A P5_Prx **
19743854-C-A 17631974-C-A P5_Prx **
19744931-C-A 17633051-C-A P5_Prx **
19837568-G-T 17725688-G-T P5_Prx **
20685882-T-A 18523996-T-A P4_Prx **
21276006-A-G 19114120-A-G **
25958328-C-A 23812181-C-A P1_Y1 **
56862611-G-A **
13611935-C-T 11456259-C-T Z23221 K639 ***
22301714-G-A 20139828-G-A DYZ19 ***
8062743-G-GA 8194702-G-GA 8×A***
21830203-G-A 19668317-G-A ***
5829064-C-A 5961023-C-A ***
10661081-C-A ***
13453648-C-T 11297972-C-T ***
10801700-TCC-T ***
14949790-C-A 12837864-C-A ***
10983554-G-T ***
14716767-C-A 12604835-C-A ***
10694109-C-A ***
19411175-T-TAA 17299295-T-TAA 13×A***
10785098-C-A ***
16768601-CT-C,CTT 14656721-CT-C,CTT 17×T***
13488225-C-A 11332549-C-A ***
8736197-C-A 8868156-C-A ***
15867939-C-A 13756059-C-A ***
10988605-C-T ***
14103141-C-A 11982435-C-A ***
19007639-TACAC-T 16895759-TACAC-T ***
6631887-T-C 6763846-T-C ***
7134853-C-T 7266812-C-T ***
8481770-G-T 8613729-G-T ***
8647915-A-G 8779874-A-G ***
8995633-AT-A 9158024-AT-A 10×T***
9867222-C-A 10029613-C-A ***
10024816-C-A 10187207-C-A ***
10956562-T-C ***
13434522-C-A 11278846-C-A ***
13474108-G-T 11318432-G-T ***
14424041-G-T 12303316-G-T ***
14516672-C-A 12404873-C-A FTB26382 ***
15899382-C-A 13787502-C-A ***
16955579-C-A 14843699-C-A ***
17020361-C-A 14908481-C-A ***
17034300-C-A 14922420-C-A ***
17729918-G-C 15618038-G-C ***
18841380-G-A 16729500-G-A ***
19055364-G-T 16943484-G-T ***
21617569-G-T 19455683-G-T ***
22269239-T-C 20107353-T-C DYZ19 ***
22904360-C-A 20742474-C-A ***
23190423-G-T 21028537-G-T ***
23209612-C-A 21047726-C-A ***
23209627-C-A 21047741-C-A ***
23597407-A-T 21435521-A-T ***
56837955-T-C ***
16710904-A-T 14599024-A-T ***
21416690-T-C 19254804-T-C ***
28534958-TGC-GC,T 26388811-TGC-GC,T ***
28671865-T-C 26525718-T-C ***
28724174-ATTTT-A,ATTT 26578027-ATTTT-A,ATTT 20×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.