Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > FGC5494 > FGC5561 > FGC19329

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
104184
BigY2
104184
24022718-C-T 21876571-C-T YA+
22227269-C-T 20065383-C-T DYZ19 A*
19582193-G-A 17470313-G-A P5_Prx YA*A*
23714717-G-A 21552831-G-A A*A*
20784541-C-T 18622655-C-T P4_Prx A*A*
19749265-G-C 17637385-G-C P5_Prx A*
26163910-C-T 24017763-C-T P1_Y1 A*A*
19580205-G-A 17468325-G-A P5_Prx YA*A*
6290237-C-A 6422196-C-A IR3_Dst A*A*
24613954-T-TTG 22467807-T-TTG P3_t2 9×TGA*
18487808-T-TA 16375928-T-TA P6_Dst 19×AA*
25570647-T-C 23424500-T-C P1_gr1 A*
25865146-G-A 23718999-G-A P1_Y1 A*
25978754-G-C 23832607-G-C P1_Y1 A*
22286325-C-A 20124439-C-A DYZ19 A*
26425680-C-T 24279533-C-T P1_Y1 A*
13451224-C-A 11295548-C-A A*
26002108-G-A 23855961-G-A P1_Y1 A*A*
6281676-G-T 6413635-G-T IR3_Dst A*A*
15404634-A-G 13292754-A-G BY54724 YY++
21603780-A-G 19441894-A-G BY134099 YY++
9985005-C-T 10147396-C-T BY82488 Y++
19215831-C-CT 17103951-C-CT 9×T+**
22553406-G-A 20391520-G-A FT144345 YY+**
22458572-T-A 20296686-T-A BY220146 DYZ19 **+
22464005-C-A 20302119-C-A BY221233 DYZ19 ++
22466194-C-T 20304308-C-T BY221684 DYZ19 **+
22486567-C-A 20324681-C-A BY224814 DYZ19 **+
18269978-C-T 16158098-C-T BY121344 ++
22944383-G-C 20782497-G-C BY141952 YY++
7044296-T-C 7176255-T-C BY62978 Y++
23073844-G-A 20911958-G-A BY142800 YY++
18418287-T-C 16306407-T-C FT144096 P6_Gap +**
15677662-A-C 13565782-A-C FT143849 Y+**
17971712-G-C 15859832-G-C BY211731 YY++
7894530-T-G 8026489-T-G FT143546 YY+***
9958728-G-T 10121119-G-T BY82169 Y++
9408302-G-A 9570693-G-A FT143642 YY+**
9381591-T-C 9543982-T-C BY78980 Y++
9140494-G-A 9302885-G-A BY78438 Y++
8994791-A-G 9157182-A-G BY77097 Y++
8770328-C-A 8902287-C-A BY75758 YY++
8686292-T-C 8818251-T-C FT143600 YY+**
8632914-G-A 8764873-G-A BY74758 YY++
7155035-C-T 7286994-C-T BY63571 Y++
17657824-T-C 15545944-T-C BY116402 YY++
6983234-A-G 7115193-A-G BY62719 YY++
11014088-T-C +**
6395477-T-C 6527436-T-C BY60122 ++
5782074-G-A 5914033-G-A FT143331 +**
14174070-G-A 12053364-G-A FT143728 YY+**
15000447-C-T 12888532-C-T FT121862 YY+**
15896316-A-G 13784436-A-G BY104770 YY++
3048077-A-G 3180036-A-G FT142812 +**
16253333-C-T 14141453-C-T BY106385 YY++
23257741-A-T 21095855-A-T FT144403 YY+**
18692616-T-C 16580736-T-C FT144110 YY+**
10018430-C-A 10180821-C-A Y+**
4551131-T-G 4683090-T-G +
12777-C-A **+
3515603-G-A 3647562-G-A +
3724935-G-C 3856894-G-C +
5759786-G-C 5891745-G-C +
3832532-G-A 3964491-G-A +
4009282-C-T 4141241-C-T +
10769336-G-A +
21551830-T-C 19389944-T-C Y+
4717545-T-A 4849504-T-A +
8985182-ATAATAGCT-A 9147573-ATAATAGCT-A +
4793788-C-T 4925747-C-T +
6584913-G-T 6716872-G-T +
5607752-G-A 5739711-G-A +
5658283-T-C 5790242-T-C +
5736265-C-A 5868224-C-A +
19023266-T-A 16911386-T-A YY+
3739165-T-C 3871124-T-C +
21755719-C-T +
25931671-A-C 23785524-A-C BY226479 P1_Y1 +
22445631-G-T 20283745-G-T DYZ19 **+
10824134-CTCCATTCCATTCCATTCCAT-C *
17313273-CTGTATTGTATTGTAT-C 15201393-CTGTATTGTATTGTAT-C 11×TGTAT****
22233878-C-T 20071992-C-T DYZ19 **
22340637-A-T 20178751-A-T DYZ19 ****
22299985-G-A 20138099-G-A BY199703 DYZ19 **
22345332-G-T 20183446-G-T DYZ19 ****
10672193-C-A **
13255640-C-T 11099964-C-T **
13263329-G-T 11107653-G-T **
14297317-C-A 12176611-C-A **
10669340-GT-G **
13698621-T-A 11542945-T-A **
13698650-C-G 11542974-C-G **
13865643-T-G 11744937-T-G **
13895704-A-T 11774998-A-T **
14080303-C-A 11959597-C-A **
10745764-C-A **
6017803-G-T 6149762-G-T **
10668749-T-C **
14458266-A-C 12337539-A-C **
14507541-C-A 12395746-C-A **
10749186-C-A **
14592159-C-G 12480359-C-G **
14592162-T-G 12480362-T-G **
14592171-T-A 12480371-T-A **
14694623-C-A 12582689-C-A **
28748643-C-T 26602496-C-T **
14799960-A-G 12688031-A-G **
14810922-C-A 12698993-C-A **
14825933-C-A 12714000-C-A **
10667251-G-T **
14827414-T-G 12715481-T-G **
14844923-G-A 12732989-G-A **
9891679-T-C 10054070-T-C **
10782648-C-A **
11021152-C-A **
10922087-C-A **
10782454-C-A **
18522225-C-CAG 16410345-C-CAG P6_Dst **
10790506-C-A **
10776370-T-G **
10806369-G-T **
10828136-CCAGT-C **
18031963-GAGGA-G 15920083-GAGGA-G 6×AGGA**
18336139-A-G 16224259-A-G P6_Prx **
10848915-T-C **
10868263-C-T **
10869809-C-T **
10892809-C-T **
10921475-C-T **
10938283-A-T **
10912290-A-G **
13608712-C-T 11453036-C-T **
10766544-T-A **
10950801-C-A **
10959438-G-A **
13375017-G-A 11219341-G-A **
28677867-A-G 26531720-A-G **
10959442-T-C **
10959490-A-T **
10766508-A-C **
10964566-C-CTACTA **
23105980-G-A 20944094-G-A **
10976454-C-A **
10993282-C-A **
14967297-T-C 12855372-T-C **
23766818-G-T 21604932-G-T **
15197606-C-A 13085692-C-A **
28519105-A-G 26372958-A-G **
20458396-G-T 18296510-G-T P5_Dst **
21045924-AGGAATTTT-A 18884038-AGGAATTTT-A **
21107106-G-T 18945220-G-T **
21242263-A-G 19080377-A-G **
21266730-C-A 19104844-C-A **
21459802-C-A 19297916-C-A **
21502926-G-T 19341040-G-T **
22085258-C-A 19923372-C-A **
22089032-T-C 19927146-T-C **
9476934-G-T 9639325-G-T **
22246620-G-T 20084734-G-T DYZ19 **
22292729-CCAGAGT-C 20130843-CCAGAGT-C DYZ19 **
6905-C-T **
56731935-C-T **
28510155-C-A 26364008-C-A **
19492772-CA-C 17380892-CA-C **
23091638-G-A 20929752-G-A **
23476237-G-C 21314351-G-C **
23431134-G-A 21269248-G-A **
23345694-A-T 21183808-A-T **
23274912-G-C 21113026-G-C **
23274901-A-G 21113015-A-G **
23137608-G-A 20975722-G-A **
26042492-A-G 23896345-A-G P1_Y1 **
27757717-T-C 25611570-T-C P1_Y2 **
26042493-T-G 23896346-T-G P1_Y1 **
23055766-C-A 20893880-C-A **
26042526-T-G 23896379-T-G P1_Y1 **
22864952-C-A 20703066-C-A **
22765740-C-A 20603854-C-A **
22682506-G-C 20520620-G-C **
19744944-C-A 17633064-C-A P5_Prx **
19304024-G-T 17192144-G-T **
15250767-C-T 13138853-C-T **
16039410-G-A 13927530-G-A **
16466118-C-A 14354238-C-A **
16344551-C-A 14232671-C-A **
5354669-C-A 5486628-C-A **
16237049-A-C 14125169-A-C **
16118273-CCGT-C 14006393-CCGT-C P8_Prx **
16063467-G-T 13951587-G-T **
24050404-G-T 21904257-G-T P3_b1 **
16706059-G-T 14594179-G-T **
15747391-C-A 13635511-C-A **
15741784-T-G 13629904-T-G **
15714341-C-G 13602461-C-G **
15513618-T-G 13401738-T-G **
15424662-A-G 13312782-A-G **
15322514-C-A 13210632-C-A **
16520719-C-A 14408839-C-A **
16719481-C-A 14607601-C-A **
19249646-G-T 17137766-G-T **
18159160-A-G 16047280-A-G 4×AAAC**
19107407-A-C 16995527-A-C **
18792785-C-A 16680905-C-A **
18625507-GAATTGATCCCTTTT-G 16513627-GAATTGATCCCTTTT-G **
18406908-A-C 16295028-A-C P6_Gap **
4644739-A-G 4776698-A-G **
18256209-C-A 16144329-C-A **
18158614-G-C 16046734-G-C **
17243860-G-T 15131980-G-T **
18125523-G-C 16013643-G-C **
17686706-C-A 15574826-C-A **
17648641-G-C 15536761-G-C **
17470719-C-A 15358839-C-A **
17382273-A-C 15270393-A-C **
17330179-C-A 15218299-C-A **
16033598-C-A 13921718-C-A **
10834873-T-A **
9973416-T-C 10135807-T-C **
31619-C-T **
10787538-A-T **
6509474-C-A 6641433-C-A **
11000425-T-TTCCTA **
11000418-C-CAATCCCTGGGGTTT **
20489535-C-A 18327649-C-A P5_Dst **
7314373-C-A 7446332-C-A **
11006403-T-C **
14101411-C-A 11980705-C-A **
17889753-C-A 15777873-C-A **
14547171-C-A 12435372-C-A **
10673139-C-T **
10837009-C-A **
28532096-C-A 26385949-C-A **
24115135-C-A 21968988-C-A P3_b1 **
10792678-C-A **
25990691-G-T 23844544-G-T P1_Y1 **
16860796-G-T 14748916-G-T **
6976069-C-A 7108028-C-A **
10689096-TCCATGC-T **
7199476-T-G 7331435-T-G **
18159185-C-A 16047305-C-A **
16789580-C-A 14677700-C-A **
15482820-C-A 13370940-C-A **
18464541-AC-A 16352661-AC-A P6_Dst **
11006466-C-A **
11035929-A-C **
11035927-T-C **
11033586-C-A **
10770896-A-T **
3990644-G-T 4122603-G-T **
17153260-C-A 15041380-C-A **
10759690-G-T **
10766514-C-A **
3848473-C-A 3980432-C-A **
19535827-C-A 17423947-C-A **
14524165-C-A 12412366-C-A **
10766591-C-G **
13233178-CA-C 11077502-CA-C **
15767104-C-A 13655224-C-A **
14614546-C-A 12502744-C-A **
21136641-C-A 18974755-C-A **
14200570-C-G 12079864-C-G **
14200567-C-G 12079861-C-G **
28724423-G-A 26578276-G-A **
9964575-C-A 10126966-C-A **
7094382-G-A 7226341-G-A **
18611741-A-C 16499861-A-C **
11673754-T-C FGC77748 **
11035939-C-CGAATT **
9424405-G-A 9586796-G-A **
28614828-A-C 26468681-A-C **
22902108-C-CAA 20740222-C-CAA 17×A**
21371751-C-A 19209865-C-A **
8427461-C-A 8559420-C-A **
56848253-C-A **
23264074-G-A 21102188-G-A **
4527493-C-A 4659452-C-A **
13461154-A-C 11305478-A-C **
13461148-AG-A 11305472-AG-A **
59022275-A-C 56876128-A-C **
56850579-G-A **
16692114-AACC-A 14580234-AACC-A **
13255636-C-T 11099960-C-T **
13255635-C-T 11099959-C-T **
16516326-C-A 14404446-C-A **
14393413-G-A 12272709-G-A ZS5037 **
8835229-T-C 8967188-T-C FGC56571 **
14184514-G-T 12063808-G-T **
17924382-T-A 15812502-T-A CTS8300 PF3770 **
14031704-T-TTC 11910998-T-TTC **
4755481-T-C 4887440-T-C **
3405458-C-A 3537417-C-A **
5894995-A-T 6026954-A-T **
10761535-T-A **
9377524-C-A 9539915-C-A **
21391681-C-A 19229795-C-A **
8217811-C-A 8349770-C-A **
2766753-C-A 2898712-C-A **
21242161-G-T 19080275-G-T **
9870129-C-A 10032520-C-A **
4138415-G-T 4270374-G-T **
10666195-C-A **
4215578-G-T 4347537-G-T **
14925854-C-A 12813919-C-A **
26292521-C-A 24146374-C-A P1_Y1 **
9940177-C-A 10102568-C-A **
10964667-C-A **
7753118-C-A 7885077-C-A **
10885021-C-A **
22097130-C-A 19935244-C-A **
11035942-T-C **
13861103-C-A 11740397-C-A **
14021526-C-A 11900820-C-A **
18422903-C-A 16311023-C-A P6_Gap **
4374171-C-A 4506130-C-A **
10834913-T-G **
11035930-G-C **
10892156-C-A **
11035956-A-G **
3851878-C-A 3983837-C-A **
4778494-G-T 4910453-G-T **
4755476-G-C 4887435-G-C **
4755474-A-G 4887433-A-G **
8167133-G-T 8299092-G-T **
4755469-A-G 4887428-A-G **
4357443-T-C 4489402-T-C **
4016980-C-A 4148939-C-A **
8171766-G-T 8303725-G-T **
7922633-T-C 8054592-T-C **
3728723-G-A 3860682-G-A **
8341686-C-A 8473645-C-A **
3662970-C-A 3794929-C-A **
3628005-T-G 3759964-T-G **
8790883-C-G 8922842-C-G ****
3452588-C-A 3584547-C-A **
9060917-A-T 9223308-A-T **
4792687-C-A 4924646-C-A **
7821426-T-G 7953385-T-G **
2799496-A-T 2931455-A-T **
7223534-C-A 7355493-C-A **
7094370-C-T 7226329-C-T **
7108838-C-A 7240797-C-A **
6830828-C-A 6962787-C-A **
7199471-C-T 7331430-C-T **
6755809-C-A 6887768-C-A **
6634717-C-A 6766676-C-A **
6588839-C-A 6720798-C-A **
6461058-C-A 6593017-C-A **
5443875-A-C 5575834-A-C **
7434983-C-A 7566942-C-A **
6400927-C-A 6532886-C-A **
5982021-G-T 6113980-G-T **
5925867-G-T 6057826-G-T **
7542383-C-A 7674342-C-A **
7708964-C-A 7840923-C-A **
5603464-A-G 5735423-A-G **
2810487-C-A 2942446-C-A **
3341403-A-C 3473362-A-C **
21175620-C-A 19013734-C-A **
22530206-G-T 20368320-G-T **
17187287-C-A 15075407-C-A **
20409646-G-T 18247760-G-T P5_Dst **
17675541-G-T 15563661-G-T 20×A**
8350361-C-A 8482320-C-A **
13484821-A-T 11329145-A-T **
13484825-A-G 11329149-A-G **
14393822-C-A 12273118-C-A **
11035952-T-C **
9700881-G-T 9863272-G-T IR3_Prx **
4926039-G-T 5057998-G-T **
9847329-T-G 10009720-T-G **
2769075-CAA-C 2901034-CAA-C 11×A**
18151676-C-A 16039796-C-A **
13484841-T-C 11329165-T-C **
9160514-A-G 9322905-A-G ****
9870099-C-T 10032490-C-T ****
9964525-C-A 10126916-C-A **
9665553-CCA-C 9827944-CCA-C IR3_Prx **
6120212-C-A 6252171-C-A **
9559487-CG-C 9721878-CG-C IR3_Prx **
10905832-G-T ***
7513071-C-A 7645030-C-A ***
13582718-C-A 11427042-C-A ***
15732333-T-C 13620453-T-C ***
14375843-CAG-C 12255139-CAG-C ***
10671523-T-C ***
10998731-C-A ***
9864955-A-G 10027346-A-G ***
3557176-A-G 3689135-A-G ***
10661330-C-CCCATCCCATT ***
3451980-C-A 3583939-C-A ***
23517252-A-G 21355366-A-G ***
22936330-C-A 20774444-C-A ***
5562377-T-C 5694336-T-C ***
19438353-A-G 17326473-A-G ***
17825054-G-A 15713174-G-A ***
15320588-GGGG-A 13208694-GGGG-A ***
15262458-CAAA-C,CA 13150542-CAAA-C,CA 30×A***
15248298-T-C 13136384-T-C ***
9117359-G-A 9279750-G-A ***
13447112-CATTCCATTCCAT-A 11291436-CATTCCATTCCAT-A ***
5744767-C-CT 5876726-C-CT 10×T***
15080010-C-. 12968100-T-C ***
58834028-C-T 56756843-G-A ***
10987152-G-T ***
10750010-C-A ***
19508177-CTTT-C,CTTTT 17396297-CTTT-C,CTTTT 19×T***
6045190-C-T 6177149-C-T ***
23759113-T-TA 21597227-T-TA 24×A***
10754779-CTAT-C,CCATTCCTC ***
10750796-T-A,C ***
17600624-T-G 15488744-T-G ***
21559817-A-G 19397931-A-G ***
22424306-C-T 20262420-C-T DYZ19 ***
22972837-TAA-T 20810951-TAA-T ***
3176022-CAA-C,CA 3307981-CAA-C,CA 14×A***
23803361-T-C 21641475-T-C ***
56861285-CTTT-C,CT 18×T***
16245917-A-G 14134037-A-G ***
2811009-C-A 2942968-C-A ***
22062415-C-A 19900529-C-A ***
21714209-C-A 19552323-C-A ***
15385592-G-A 13273712-G-A ***
15404064-C-A 13292184-C-A ***
21468463-C-A 19306577-C-A ***
4929048-C-CA 5061007-C-CA 8×A***
14900674-G-T 12788741-G-T ***
20970614-G-T 18808728-G-T P4_Dst ***
19333525-C-A 17221645-C-A ***
18254760-C-A 16142880-C-A ***
16246054-G-T 14134174-G-T ***
2843950-C-A 2975909-C-A ***
5633804-G-GA 5765763-G-GA 9×A***
16340497-C-A 14228617-C-A ***
18565059-C-A 16453179-C-A ***
16455163-G-T 14343283-G-T ***
19007647-C-A 16895767-C-A ***
16476468-C-A 14364588-C-A ***
18084065-T-C 15972185-T-C ***
18021339-C-A 15909459-C-A ***
17185727-C-A 15073847-C-A ***
17950331-C-A 15838451-C-A ***
17753915-C-T 15642035-C-T ***
17195131-C-A 15083251-C-A ***
23834711-G-T 21672825-G-T ***
2884726-C-A 3016685-C-A ***
6447774-GTTT-G 6579733-GTTT-G 16×T***
13476894-C-A 11321218-C-A ***
11027740-G-T ***
21295236-T-TA 19133350-T-TA ***
6840819-C-A 6972778-C-A ***
56830393-C-T ***
13487905-GG-C 11332229-GG-C ***
10975435-C-A ***
10995602-C-A ***
3134256-GA-G 3266215-GA-G 10×A***
24504583-GT-G 22358436-GT-G ***
23824372-C-A 21662486-C-A ***
10956526-C-A ***
13446531-ATTCCATTCCATTCCATTCCATTCCATTC-A,ACTCCATTCCATTCCATTC 11290855-ATTCCATTCCATTCCATTCCATTCCATTC-A,ACTCCATTCCATTCCATTC ***
23445376-T-C 21283490-T-C ***
14960344-C-T 12848419-C-T ***
5358803-C-A 5490762-C-A ***
5022128-GA-G,GAA 5154087-GA-G,GAA 11×A***
23258159-C-A 21096273-C-A ***
14424072-G-A 12303347-G-A ***
10998756-C-A ***
23041365-A-G 20879479-A-G ***
23002521-C-A 20840635-C-A ***
22647539-C-A 20485653-C-A ***
22646538-C-A 20484652-C-A ***
14701610-A-G 12589676-A-G ***
3626076-C-A 3758035-C-A ***
6020688-G-GTT 6152647-G-GTT 23×T***
15632-G-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 104184889759172443157182565
Kit: 1041841469838892252908220866
Used in age calculations1469838892252908220866
Counts of SNPs1813
Variant counts last updated 2019-11-12 02:42:18.



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