Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > Z295/S1217 > S25783 > CTS4065 > S16864 > A5377

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
269948
19772294-A-G 17660414-A-G P5_Prx A*
13687074-A-C 11531398-A-C A*
25971170-G-A 23825023-G-A P1_Y1 10×TA*
19930713-C-T 17818833-C-T P5_Prx A*
20750426-G-A 18588540-G-A P4_Prx A*
25873997-A-C 23727850-A-C P1_Y1 A*
7259891-G-T 7391850-G-T BY64225 YY+
23486912-A-G 21325026-A-G BY145674 YY+
7331918-T-G 7463877-T-G BY64618 YY+
7405750-T-C 7537709-T-C BY65029 YY+
7736577-T-G 7868536-T-G BY67223 YY+
22467089-C-A 20305203-C-A BY221844 DYZ19 +
22464054-T-A 20302168-T-A BY36251 DYZ19 +
22439036-G-A 20277150-G-A BY218632 DYZ19 +
22083418-C-T 19921532-C-T BY137504 YY+
8247930-T-C 8379889-T-C BY71107 YY+
8498831-C-A 8630790-C-A BY36243 YY+
8405949-C-A 8537908-C-A BY72404 YY+
8752005-C-T 8883964-C-T BY75622 YY+
9017785-G-A 9180176-G-A BY77383 Y+
9089896-T-C 9252287-T-C Y+
15306821-A-G 13194923-A-G BY36247 YY+
9826843-A-G 9989234-A-G BY81246 YY+
9875584-C-T 10037975-C-T BY36244 YY+
10040604-T-C 10202995-T-C BY83370 +
16413306-G-A 14301426-G-A BY107621 YY+
19049341-T-C 16937461-T-C BY125795 YY+
19040116-A-G 16928236-A-G BY36249 YY+
16681787-T-C 14569907-T-C BY109402 YY+
23732631-G-T 21570745-G-T BY36250 +
7670577-T-G 7802536-T-G BY66707 YY+
25881824-C-T 23735677-C-T BY226447 P1_Y1 +
25944563-C-T 23798416-C-T BY226499 P1_Y1 +
16790690-G-A 14678810-G-A FGC42119 YY+
28591324-G-T 26445177-G-T BY150737 +
13686375-T-A 11530699-T-A BY36246 +
13668584-T-A 11512908-T-A BY36245 +
17581526-T-C 15469646-T-C BY36248 YY+
22302491-T-C 20140605-T-C DYZ19 *
28805253-G-C 26659106-G-C *
13719177-A-G 11563501-A-G *
28805254-G-A 26659107-G-A *
15558495-TAGATAGAC-T,TAGATAGAT 13446615-TAGATAGAC-T,TAGATAGAT *
22233804-A-T 20071918-A-T DYZ19 *
11034497-T-C **
10816172-C-A **
10824794-A-C **
10821150-CTCTCG-C **
11033730-C-A **
10820516-C-A **
11033749-T-A **
10757765-C-A **
10772533-C-G **
11034487-T-C **
10800879-CCATTT-C **
10777745-C-T **
11033750-C-G **
10779041-C-A **
11034498-G-C **
10795391-C-A **
10794893-G-T **
10850409-TCCATTCCATTAAATTC-T **
10928132-C-T **
10880359-CTCCAT-C **
11022506-T-G **
10958845-C-A **
10982791-C-A **
10989643-G-T **
10753140-G-T **
10993105-T-G **
10927849-C-T **
10993148-C-A **
11019343-C-A **
10924073-C-A **
10958833-T-TTGCACTCCAA **
11030053-C-A **
11030083-C-T **
10928143-C-A **
10921740-C-A **
10928213-CATTCT-C **
10947644-T-C **
10955431-C-T **
10919634-C-A **
10889359-A-C **
11033727-A-G **
22893369-C-CTTTCT 20731483-C-CTTTCT 10×T**
10679681-C-T **
5858445-A-C 5990404-A-C **
6626781-T-A 6758740-T-A **
6626768-T-G 6758727-T-G **
6471546-G-T 6603505-G-T **
6471541-G-T 6603500-G-T **
6356070-A-C 6488029-A-C **
6330864-C-A 6462823-C-A IR3_Dst **
6241003-A-T 6372962-A-T IR3_Dst **
5955320-C-T 6087279-C-T **
5870174-C-A 6002133-C-A **
5576685-G-T 5708644-G-T **
6901261-G-T 7033220-G-T **
5534855-T-G 5666814-T-G **
5199676-G-T 5331635-G-T **
5170569-A-G 5302528-A-G **
5077955-T-G 5209914-T-G **
5060207-A-C 5192166-A-C **
4914999-G-A 5046958-G-A **
4757700-T-G 4889659-T-G **
4713250-G-T 4845209-G-T **
4533715-C-A 4665674-C-A **
4374243-A-G 4506202-A-G **
6822043-G-A 6954002-G-A **
7164195-T-G 7296154-T-G **
10669477-T-G **
13196547-G-T 11040871-G-T **
10669468-C-G **
10659424-C-A **
10657067-T-C **
10656317-T-C **
10656306-A-T **
10656300-C-T **
10656267-T-C **
10656241-A-T **
10026681-C-A 10189072-C-A **
9936580-G-T 10098971-G-T **
9669047-CT-C 9831438-CT-C IR3_Prx **
7224123-A-AT 7356082-A-AT **
9564455-T-A 9726846-T-A IR3_Prx **
9511968-T-G 9674359-T-G **
9307444-T-G 9469835-T-G **
9189779-T-A 9352170-T-A **
9189759-G-T 9352150-G-T **
9189752-T-A 9352143-T-A **
8699174-G-T 8831133-G-T **
8085393-T-A 8217352-T-A **
8058518-C-A 8190477-C-A **
7254516-A-G 7386475-A-G FT33803 **
11034502-A-C **
13719646-G-T 11563970-G-T **
13223323-A-C 11067647-A-C **
21697237-C-A 19535351-C-A **
23439091-A-T 21277205-A-T **
23185879-T-A 21023993-T-A **
23144334-T-A 20982448-T-A **
23099847-C-T 20937961-C-T **
22884986-C-A 20723100-C-A **
22173434-C-A 20011548-C-A **
22056595-A-C 19894709-A-C **
22022826-T-C 19860940-T-C **
21861825-A-G 19699939-A-G **
21708784-G-T 19546898-G-T **
21556715-G-T 19394829-G-T **
24257976-G-C 22111829-G-C P3_b1 **
21511406-C-A 19349520-C-A **
21368468-C-A 19206582-C-A **
21106887-C-A 18945001-C-A **
20840372-T-G 18678486-T-G P4_Gap **
20645973-C-A 18484087-C-A P4_Prx **
20569330-G-T 18407444-G-T P5_Dst **
20448610-A-AG 18286724-A-AG P5_Dst **
20050964-T-G 17939084-T-G P5_Prx **
19746557-A-T 17634677-A-T P5_Prx **
19746547-T-G 17634667-T-G P5_Prx **
19746533-T-G 17634653-T-G P5_Prx **
23569417-G-C 21407531-G-C **
24257983-T-A 22111836-T-A P3_b1 **
19746509-A-C 17634629-A-C P5_Prx **
28468724-C-A 26322577-C-A **
56851597-A-T **
56742675-TGG-T **
56742670-TGGAA-T **
28818317-A-C 26672170-A-C **
28800736-A-C 26654589-A-C **
28794176-T-A 26648029-T-A **
28734768-T-G 26588621-T-G **
28708889-C-A 26562742-C-A **
28512620-G-T 26366473-G-T **
28510415-C-T 26364268-C-T **
28030884-T-A 25884737-T-A P1_Y2 **
24258000-T-A 22111853-T-A P3_b1 **
27844756-A-T 25698609-A-T P1_Y2 **
27844741-G-T 25698594-G-T P1_Y2 **
27844735-G-T 25698588-G-T P1_Y2 **
27575891-C-A 25429744-C-A P1_Y2 **
26386477-T-A 24240330-T-A P1_Y1 **
26285995-G-T 24139848-G-T P1_Y1 **
26075368-A-T 23929221-A-T P1_Y1 **
26075362-G-T 23929215-G-T P1_Y1 **
26075349-A-T 23929202-A-T P1_Y1 **
25937265-T-A 23791118-T-A P1_Y1 **
24258070-T-A 22111923-T-A P3_b1 **
19746523-T-G 17634643-T-G P5_Prx **
19746491-A-T 17634611-A-T P5_Prx **
13223586-G-A 11067910-G-A **
11675860-T-A **
14036167-C-A 11915461-C-A **
14015098-G-T 11894392-G-T **
13921531-A-C 11800825-A-C **
13903000-A-C 11782294-A-C **
13888826-C-G 11768120-C-G **
13886016-A-G 11765310-A-G **
13884171-A-C 11763465-A-C **
13858560-G-GAATCA 11737854-G-GAATCA **
13858554-G-GAATT 11737848-G-GAATT **
13858550-G-GA 11737844-G-GA **
11666639-T-C **
14107012-A-T 11986306-A-T **
11643742-TGG-CAC **
4070177-A-C 4202136-A-C **
13719634-G-C 11563958-G-C **
13630803-A-T 11475127-A-T **
13597212-A-T 11441536-A-T **
13596272-A-C 11440596-A-C **
13588348-A-G 11432672-A-G **
13566546-G-A 11410870-G-A BY86441 **
13422190-C-A 11266514-C-A **
13406186-T-C 11250510-T-C **
13253855-C-A 11098179-C-A **
14099802-C-A 11979096-C-A **
14789369-T-A 12677440-T-A **
19612098-G-T 17500218-G-T P5_Prx **
17039066-C-A 14927186-C-A **
19297060-A-C 17185180-A-C **
18539020-C-A 16427140-C-A BY122047 **
18183227-A-C 16071347-A-C **
18173017-C-A 16061137-C-A **
18127670-A-C 16015790-A-C **
18093949-C-A 15982069-C-A **
17538002-A-C 15426122-A-C **
17433855-G-T 15321975-G-T **
17375072-A-C 15263192-A-C **
17374780-T-G 15262900-T-G **
16988948-C-A 14877068-C-A **
14989199-A-C 12877265-A-C **
16842982-T-G 14731102-T-G **
16619849-C-A 14507969-C-A **
16539792-A-G 14427912-A-G **
16342580-G-C 14230700-G-C **
16057236-C-A 13945356-C-A **
16007133-A-C 13895253-A-C **
15971319-C-G 13859439-C-G **
15818536-G-A 13706656-G-A BY104322 **
15687048-C-A 13575168-C-A **
15368560-T-G 13256680-T-G **
15183872-C-A 13071958-C-A **
4123657-A-C 4255616-A-C **
4749627-G-T 4881586-G-T **
3795520-C-A 3927479-C-A **
10928170-C-T **
10657028-C-A **
27213673-A-C 25067526-A-C P1_g3 **
28556356-T-G 26410209-T-G **
11030033-T-C **
56858003-T-G **
10993135-T-G **
16616761-C-A 14504881-C-A **
10656292-A-T **
28818378-G-C 26672231-G-C **
10657064-G-C **
2970438-C-A 3102397-C-A **
28549877-A-T 26403730-A-T **
11017526-A-C **
27213675-A-C 25067528-A-C P1_g3 **
10766288-ATTT-A **
5755172-C-A 5887131-C-A **
10988834-C-T **
10988824-C-G **
10889783-T-A **
10889775-C-G **
10889761-A-AGC **
10889760-C-CTTT **
10995868-C-A **
8816448-C-A 8948407-C-A **
13896047-AT-A 11775341-AT-A 9×T**
10795809-G-T **
28794185-G-T 26648038-G-T **
10804840-CTTTAA-C **
10995874-C-T **
10823251-C-A **
19612066-A-C 17500186-A-C P5_Prx **
14387079-C-A 12266375-C-A **
23142299-C-A 20980413-C-A **
56844633-G-T **
10983932-T-A **
10983915-C-T **
2729648-CTTTTTTT-C 2861607-CTTTTTTT-C 25×T**
10919123-A-G **
15763252-G-T 13651372-G-T **
11669467-C-A **
10995869-C-T **
19528441-C-A 17416561-C-A **
10995864-C-T **
11017509-C-G **
10876915-C-T **
10876914-T-A **
10876889-A-T **
10876877-C-A **
10876865-T-G **
7239625-C-A 7371584-C-A **
10890262-C-A **
10955463-T-C **
11030096-G-C **
10993130-A-C **
18262037-C-A 16150157-C-A **
10804812-T-TACTA **
10669539-C-T **
10925199-T-C **
10925215-G-A **
10925211-G-C **
10925191-T-TC **
10925189-A-G **
10928205-C-A **
10928148-T-G **
20025482-TCCC-T 17913602-TCCC-T P5_Prx 14×C**
6916139-C-A 7048098-C-A **
22551366-C-A 20389480-C-A **
11037108-C-A **
10989167-C-A **
10942904-C-T **
10925258-T-G **
10942899-C-T **
10942892-C-A **
10942884-T-C **
10988839-C-G **
5936147-G-T 6068106-G-T **
22274082-C-A 20112196-C-A DYZ19 **
16157735-G-GA 14045855-G-GA P8_Dst 10×AAAGA**
16157739-GA-G 14045859-GA-G P8_Dst **
4359218-G-T 4491177-G-T FT16386 **
13480909-C-A 11325233-C-A **
58844620-C-A 56746251-G-T **
14232788-TC-T 12112082-TC-T **
10925235-G-A **
19318178-C-A 17206298-C-A 28×T**
18328804-C-AAA 16216924-C-AAA P6_Prx **
9189767-T-A 9352158-T-A **
10656987-C-G **
7224173-C-A 7356132-C-A **
10995884-C-CATTAT **
11030063-T-C **
11030062-A-T **
11030061-A-T **
10889795-C-T **
5577301-C-A 5709260-C-A **
20603885-G-T 18441999-G-T P5_Dst **
10928822-C-G **
10928809-C-A **
28794198-G-T 26648051-G-T **
10993050-G-T **
13857332-C-A 11736626-C-A **
10804837-T-C **
11037105-C-G **
11038116-A-T **
11030029-C-A **
10657011-T-A **
13287227-G-C 11131551-G-C **
13287221-T-C 11131545-T-C **
10927846-C-T **
10792585-T-A **
10664798-T-A **
14088991-C-A 11968285-C-A **
10766276-G-C **
13323797-C-A 11168121-C-A **
10669446-T-TC **
56879735-G-T **
11038160-C-A **
21522417-G-T 19360531-G-T **
14802949-C-A 12691020-C-A **
10795378-C-A **
16277746-C-A 14165866-C-A **
20447356-G-T 18285470-G-T P5_Dst **
8901074-C-A 9033033-C-A **
18263697-C-A 16151817-C-A **
8976782-G-T 9139173-G-T **
21747686-T-C 19585800-T-C **
19438446-GAAGAAAGA-G 17326566-GAAGAAAGA-G 15×AAGA**
11038140-CA-C **
10669444-CA-C **
3847216-C-A 3979175-C-A **
14372104-C-A 12251400-C-A **
10924291-C-A **
14470604-C-A 12349873-C-A **
10669455-A-T **
10927893-G-A **
11655275-C-A **
16085604-C-A 13973724-C-A **
26325096-T-G 24178949-T-G P1_Y1 **
21477195-C-A 19315309-C-A **
21115956-C-A 18954070-C-A **
10657054-G-C **
6037593-C-A 6169552-C-A **
13726146-G-A 11570470-G-A **
3051446-C-A 3183405-C-A **
4957876-G-T 5089835-G-T **
5936157-TAG-T 6068116-TAG-T **
5936148-A-G 6068107-A-G **
18212461-C-A 16100581-C-A **
10669527-T-G **
18138172-A-C 16026292-A-C **
10927898-C-A **
11038069-C-A **
10657033-T-C **
17633119-C-A 15521239-C-A **
28505225-T-A 26359078-T-A **
10878250-A-G **
10876052-G-T **
19138805-C-A 17026925-C-A **
17254801-C-A 15142921-C-A **
10656302-C-G **
10656307-C-T **
10997293-G-T **
6457074-G-GT 6589033-G-GT 9×T**
13196396-A-C 11040720-A-C **
10995837-T-A **
5761488-T-G 5893447-T-G **
13696838-T-G 11541162-T-G **
56742665-TGGAA-T **
10791287-A-T **
6829473-C-A 6961432-C-A **
26078942-G-T 23932795-G-T P1_Y1 **
7295872-C-A 7427831-C-A **
5601070-A-T 5733029-A-T **
13705500-G-C 11549824-G-C **
10956734-C-A **
23206865-C-A 21044979-C-A **
14183346-C-A 12062640-C-A **
13505373-C-A 11349697-C-A **
21604031-T-G 19442145-T-G **
3535942-C-G 3667901-C-G **
10928154-C-A **
13422414-C-A 11266738-C-A **
10988660-C-A **
3076059-C-A 3208018-C-A **
10657004-C-A **
4256830-C-A 4388789-C-A **
10669506-T-G **
10689068-C-A **
10689057-C-T **
10744528-G-C FGC81116 **
26146849-C-A 24000702-C-A P1_Y1 **
10946244-C-T **
56771162-T-A **
11655276-C-A **
19600507-TGG-T 17488627-TGG-T P5_Prx **
10993111-T-G **
10995826-C-G **
10807052-C-CGA **
15412475-T-A 13300595-T-A **
10927903-C-A **
27967238-GTA-G 25821091-GTA-G P1_Y2 **
10772557-T-A **
11038084-C-A **
16053457-C-A 13941577-C-A **
10807047-CCA-C **
3349229-CAA-C 3481188-CAA-C 22×A**
10821166-T-A **
11017539-C-T **
11017536-T-C **
28536266-C-A 26390119-C-A **
21677310-C-A 19515424-C-A **
28618330-C-A 26472183-C-A **
10664947-G-T **
28496367-G-A 26350220-G-A **
10684215-A-C **
14724622-C-A 12612690-C-A **
11033726-C-T **
10669515-A-AG **
6734680-CTTTTT-C 6866639-CTTTTT-C 21×T***
58992513-CA-C 56846366-CA-C ***
10969844-C-A ***
8466040-C-CT 8597999-C-CT 10×T***
10986498-C-A ***
24278268-AAG-A 22132121-AAG-A P3_b1 ***
10657377-T-A ***
7098902-TAAAAAA-T 7230861-TAAAAAA-T 16×A***
16867531-C-A 14755651-C-A ***
13487740-CCCT-C,CCC 11332064-CCCT-C,CCC ***
3621461-T-C 3753420-T-C ***
22849491-CTTTTTTTTT-C 20687605-CTTTTTTTTT-C 20×T***
14181310-G-T 12060604-G-T ***
11038229-C-A ***
11038198-T-C ***
16730003-G-GAAA 14618123-G-GAAA 17×A***
8785469-T-C 8917428-T-C ***
15430354-C-A 13318474-C-A 8×A***
16316634-G-A 14204754-G-A ***
56835353-TTCTATTCCAC-T ***
17500665-G-T 15388785-G-T ***
13487731-C-G 11332055-C-G ***
10999881-T-TTTGAG ***
18871905-C-A 16760025-C-A ***
8760517-CTTTT-C,CT 8892476-CTTTT-C,CT 20×T***
21953534-C-A 19791648-C-A ***
9843184-C-CA,CAA 10005575-C-CA,CAA 15×A***
21446217-CTTTTTTTTT-C 19284331-CTTTTTTTTT-C 23×T***
7078470-C-A 7210429-C-A ***
22277437-A-T 20115551-A-T DYZ19 ***
22428960-G-C 20267074-G-C DYZ19 ***
22614280-G-T 20452394-G-T ***
11656992-C-A ***
7280952-CTTTTTT-C 7412911-CTTTTTT-C 26×T***
11038174-C-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 269948983191780159847892919
Used in age calculations983191780159847892919
Counts of SNPs2022
Variant counts last updated 2019-09-10 00:14:29.



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