Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF49/S474 > FGC11210 > FGC11163 > ZZ33 > A10103 > Y55 > BY23495 > BY82600

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
B262694
BigY2
B262694
20271429-A-G 18109543-A-G P5_Dst A+
56832547-C-CATTCT A*
6296668-C-T 6428627-C-T BY6035 IR3_Dst A*
20775175-G-T 18613289-G-T P4_Prx 10×AA*
13451013-A-T 11295337-A-T A*
21509769-A-G 19347883-A-G YY+**
8471787-A-G 8603746-A-G BY73115 YY++
14436918-T-C 12316191-T-C FT111293 Y+**
18752305-C-T 16640425-C-T BY123647 YY++
28765695-G-T 26619548-G-T BY151077 Y++
8634381-TACAC-T 8766340-TACAC-T 22×AC*
15216523-T-C 13104609-T-C **
14953425-C-G 12841499-C-G **
14910870-C-A 12798937-C-A **
14845409-G-C 12733475-G-C **
14824073-A-G 12712140-A-G **
14697008-G-C 12585074-G-C **
14779558-C-T 12667628-C-T **
14704399-T-G 12592465-T-G **
15697089-C-CAAAATATATAAATAAATA 13585209-C-CAAAATATATAAATAAATA 9×AATA**
14593025-C-A 12481225-C-A **
14530883-C-A 12419084-C-A **
14452663-T-C 12331936-T-C **
14452661-A-C 12331934-A-C **
15697077-A-G 13585197-A-G **
16421100-G-A 14309220-G-A **
15816239-T-C 13704359-T-C **
17297308-C-T 15185428-C-T **
18307728-A-C 16195848-A-C P6_Prx **
18130462-C-T 16018582-C-T **
18093350-T-A 15981470-T-A **
18037869-T-C 15925989-T-C **
17886302-C-A 15774422-C-A **
17692127-G-A 15580247-G-A **
16826496-C-A 14714616-C-A **
15860108-C-A 13748228-C-A **
16765502-T-A 14653622-T-A **
16747489-G-T 14635609-G-T **
16475180-T-G 14363300-T-G **
14370896-G-A 12250192-G-A BY169919 **
16305807-C-T 14193927-C-T **
15866222-C-A 13754342-C-A **
14423995-G-T 12303270-G-T **
13958387-C-A 11837681-C-A **
14098637-G-A 11977931-G-A **
10673814-A-T **
10866594-C-A **
23315961-C-T 21154075-C-T CTS11852 M2295 **
10839757-C-A **
10839662-C-A **
10785115-T-G **
10777751-C-A **
10070256-C-G 10232647-C-G **
10912588-A-G **
10025372-G-A 10187763-G-A **
10024977-C-A 10187368-C-A **
10016039-G-T 10178430-G-T **
9938985-C-A 10101376-C-A **
9465362-C-A 9627753-C-A **
9440287-C-T 9602678-C-T **
10889780-C-CGGATG **
10982063-T-C **
14088848-T-C 11968142-T-C **
11654802-A-G **
14025986-A-T 11905280-A-T **
18583989-T-G 16472109-T-G **
13805065-T-TCAGACGGAA 11684359-T-TCAGACGGAA **
11668985-A-T **
11666330-A-C **
11662390-C-A **
13643143-C-T 11487467-C-T **
10997149-C-CCAATACAATCCATTA **
13525275-C-A 11369599-C-A **
13468190-A-T 11312514-A-T **
13332341-A-C 11176665-A-C **
13321335-A-G 11165659-A-G **
11027480-C-A **
11025956-T-A **
11023126-C-A **
18524479-G-A 16412599-G-A P6_Dst **
18915434-C-A 16803554-C-A **
18584005-T-G 16472125-T-G **
26216610-C-A 24070463-C-A P1_Y1 **
28483784-G-T 26337637-G-T **
27849091-G-T 25702944-G-T P1_Y2 **
27757441-C-A 25611294-C-A P1_Y2 **
26216634-C-A 24070487-C-A P1_Y1 **
26216621-C-A 24070474-C-A P1_Y1 **
26216616-C-A 24070469-C-A P1_Y1 **
26062858-C-A 23916711-C-A P1_Y1 **
28604551-C-A 26458404-C-A **
25966175-A-T 23820028-A-T P1_Y1 **
25966167-A-T 23820020-A-T P1_Y1 **
25966138-A-T 23819991-A-T P1_Y1 **
24602232-T-C 22456085-T-C P3_t2 **
24602218-TTTTTTTGGGTTG-ACCCCCCCCCCCC 22456071-TTTTTTTGGGTTG-ACCCCCCCCCCCC P3_t2 **
24504630-C-A 22358483-C-A **
28604539-C-T 26458392-C-T FT151658 **
28697177-A-C 26551030-A-C **
23565511-T-C 21403625-T-C **
2842310-C-G 2974269-C-G **
20440406-T-C 18278520-T-C P5_Dst **
20440395-G-GTTTTTGGTTC 18278509-G-GTTTTTGGTTC P5_Dst **
19706116-A-C 17594236-A-C P5_Prx **
6339132-C-CAT 6471091-C-CAT IR3_Dst **
3999821-GTATATATATATATATA-G 4131780-GTATATATATATATATA-G 17×TA**
3463029-T-C 3594988-T-C **
2842308-T-C 2974267-T-C **
28707359-C-A 26561212-C-A **
2673749-T-C 2805708-T-C **
56881930-C-A **
56876124-CAAAAAA-C 50×A**
28816068-G-C 26669921-G-C **
28731376-C-A 26585229-C-A **
28719502-C-A 26573355-C-A **
23609993-C-A 21448107-C-A **
23523746-C-A 21361860-C-A **
18630082-T-G 16518202-T-G **
19663249-C-A 17551369-C-A P5_Prx **
20998894-C-A 18837008-C-A P4_Dst **
20998893-A-T 18837007-A-T P4_Dst **
20573164-A-T 18411278-A-T P5_Dst **
20573148-A-T 18411262-A-T P5_Dst **
19948128-TCCC-T 17836248-TCCC-T P5_Prx **
19792466-T-A 17680586-T-A P5_Prx **
19600639-C-CATAT 17488759-C-CATAT P5_Prx **
20998950-A-T 18837064-A-T P4_Dst **
18982606-G-T 16870726-G-T **
18966193-CT-C 16854313-CT-C **
18928122-T-C 16816242-T-C **
18925216-C-A 16813336-C-A FT134542 **
8090680-A-G 8222639-A-G **
18688440-A-T 16576560-A-T **
20998902-G-T 18837016-G-T P4_Dst **
21149548-A-T 18987662-A-T **
23392153-C-A 21230267-C-A **
21990872-C-A 19828986-C-A **
23371940-C-A 21210054-C-A **
23305570-C-A 21143684-C-A **
23255863-C-T 21093977-C-T **
22801848-A-G 20639962-A-G **
22528196-A-T 20366310-A-T **
22190646-C-A 20028760-C-A **
21911416-C-A 19749530-C-A **
21153220-A-G 18991334-A-G **
21884815-C-A 19722929-C-A **
21624511-A-C 19462625-A-C **
21485976-T-C 19324090-T-C **
21317650-C-A 19155764-C-A **
21262223-C-T 19100337-C-T **
21248589-A-C 19086703-A-C **
21238443-C-A 19076557-C-A **
8288844-A-T 8420803-A-T **
10844793-C-A **
16874915-C-A 14763035-C-A **
13254627-C-A 11098951-C-A **
10799604-C-G **
8661675-C-A 8793634-C-A **
10979355-T-A **
3123238-C-A 3255197-C-A **
16765596-A-AT 14653716-A-AT **
16018890-C-A 13907010-C-A **
15986650-C-A 13874770-C-A **
2842300-G-A 2974259-G-A **
15697069-A-G 13585189-A-G **
10997132-T-G **
10997144-C-T **
9374728-C-A 9537119-C-A **
8901074-CACATATATATATAT-C 9033033-CACATATATATATAT-C **
15697071-C-A 13585191-C-A **
11437-A-G **
7311335-ATTCCTTCCTTCCTTCC-A 7443294-ATTCCTTCCTTCCTTCC-A 11×TTCC**
6130240-A-T 6262199-A-T **
9979080-C-A 10141471-C-A **
14953548-C-A 12841622-C-A **
19294965-A-C 17183085-A-C **
21202557-C-A 19040671-C-A **
15870711-C-A 13758831-C-A **
10629680-T-C **
10629678-A-T **
16605628-C-A 14493748-C-A **
10799585-C-A **
5625965-C-A 5757924-C-A **
14101187-T-C 11980481-T-C 5×TTC**
16530644-C-A 14418764-C-A **
11011654-A-C **
10689400-G-T **
13598649-C-A 11442973-C-A **
22974724-C-A 20812838-C-A **
16504958-C-A 14393078-C-A **
9502552-G-T 9664943-G-T **
10841482-T-C **
10841486-T-C **
10841489-T-C **
10841499-C-T **
5557471-C-A 5689430-C-A **
9498939-C-A 9661330-C-A **
9870154-C-A 10032545-C-A **
10997124-C-G **
21263521-C-A 19101635-C-A **
22164546-TCAA-T 20002660-TCAA-T **
16305841-C-T 14193961-C-T **
10997117-T-A **
21211770-C-A 19049884-C-A **
10889809-C-A **
10799605-C-A **
10850823-A-T **
10799619-C-G **
10010535-C-A 10172926-C-A **
7784584-C-A 7916543-C-A **
10799616-A-G **
10771094-A-C **
10799612-C-A **
15355249-C-A 13243368-C-A **
10889816-A-C **
21362286-C-A 19200400-C-A **
16320202-G-T 14208322-G-T **
10654394-T-C **
10654416-C-G **
10834006-C-A **
18625518-T-C 16513638-T-C **
17517262-C-A 15405382-C-A **
24579824-T-G 22433677-T-G P3_t2 **
5675344-G-A 5807303-G-A FT162546 **
11027531-T-C **
10774310-G-T **
24579824-T-TTG 22433677-T-TTG P3_t2 **
3063220-C-A 3195179-C-A **
3923140-C-A 4055099-C-A **
4103636-C-A 4235595-C-A **
4242996-T-A 4374955-T-A **
4243009-T-A 4374968-T-A **
4243018-T-A 4374977-T-A **
4587293-A-AT 4719252-A-AT 10×T**
4594769-C-A 4726728-C-A **
5523556-T-C 5655515-T-C **
6664426-CTATGTGGGCTCT-C 6796385-CTATGTGGGCTCT-C **
21116018-C-A 18954132-C-A **
6682067-C-A 6814026-C-A **
6881486-G-T 7013445-G-T **
7030455-A-C 7162414-A-C **
14351330-C-T 12230625-C-T M2171 CTS2535 **
15733879-C-CAA 13621999-C-CAA 25×A**
7102433-G-T 7234392-G-T **
7188182-A-T 7320141-A-T **
7221759-C-A 7353718-C-A **
7303517-C-A 7435476-C-A **
7311653-C-A 7443612-C-A **
7340331-C-A 7472290-C-A **
7384857-C-A 7516816-C-A **
7396449-T-A 7528408-T-A **
22123128-C-A 19961242-C-A **
13218926-C-A 11063250-C-A **
10850813-A-T **
16765586-T-C 14653706-T-C **
18982586-AG-T 16870706-AG-T **
19438554-G-T 17326674-G-T **
19464263-G-T 17352383-G-T **
10686477-C-A **
9070124-C-CAATAAT 9232515-C-CAATAAT 10×AAT**
16344380-TCTC-T 14232500-TCTC-T **
7534574-C-A 7666533-C-A **
10997092-T-C **
9442421-C-A 9604812-C-A **
15579541-C-A 13467661-C-A **
18145692-C-A 16033812-C-A **
18125600-A-G 16013720-A-G **
16305850-G-A 14193970-G-A **
10927167-A-C **
21912160-C-A 19750274-C-A **
13998219-C-T 11877513-C-T M2167 CTS1637 **
22965827-C-A 20803941-C-A **
15622544-G-A 13510664-G-A **
13586034-C-A 11430358-C-A **
9502526-GA-G 9664917-GA-G **
2855467-AT-A,A 2987426-AT-A,A 16×T***
28496348-CAAAA-C,CAAA 26350201-CAAAA-C,CAAA 18×A***
28581776-T-C 26435629-T-C ***
21651842-A-ATG 19489956-A-ATG ***
5344471-TAAA-T 5476430-TAAA-T 37×A***
13470643-G-T 11314967-G-T ***
13449351-C-A,G 11293675-C-A,G ***
15412847-C-T 13300967-C-T CTS4127 M2187 ***
11000425-T-C ***
17946635-CTTT-C,CTTTTT 15834755-CTTT-C,CTTTTT 20×T***
13468261-C-A 11312585-C-A ***
10032871-C-A 10195262-C-A ***
13255809-T-TG,TGG 11100133-T-TG,TGG 12×G***
2994612-CG-C 3126571-CG-C ***
13203566-C-CAA 19×A***
17128576-A-G 15016696-A-G ***
16999974-T-C 14888094-T-C ***
15557030-C-T 13445150-C-T ***
13719632-T-C 11563956-T-C ***
4331954-G-A 4463913-G-A ***
13468303-G-C 11312627-G-C ***
13453444-A-G 11297768-A-G ***
13468314-C-A 11312638-C-A ***
7849906-G-A 7981865-G-A ***
23352475-C-A 21190589-C-A ***
4114633-C-A 4246592-C-A ***
14421985-C-A 12301260-C-A ***
14385191-CTAGGT-C 12264487-CTAGGT-C ***
16705165-C-A 14593285-C-A ***
14066845-G-A 11946139-G-A ***
13809158-G-T 11688452-G-T ***
7101212-G-A 7233171-G-A ***
7363462-C-A 7495421-C-A ***
13468277-C-CGCG 11312601-C-CGCG ***
13202613-GGTC-G 11046937-GGTC-G ***
16416842-T-A 14304962-T-A ***
10935584-T-A,C ***
10911831-A-G ***
6913745-G-A 7045704-G-A ***
7101211-T-C 7233170-T-C ***
7101224-T-C 7233183-T-C ***
10033329-GC-G 10195720-GC-G ***
7255972-CAGT-C 7387931-CAGT-C ***
9973636-C-A 10136027-C-A ***
9404367-A-G 9566758-A-G ***
15864120-C-A 13752240-C-A ***
16532586-C-A 14420706-C-A ***
23352337-C-A 21190451-C-A ***
3171902-CAA-C 3303861-CAA-C 13×A***
23089657-C-A 20927771-C-A ***
22979193-C-A 20817307-C-A ***
16007795-G-T 13895915-G-T ***
3346144-C-A 3478103-C-A ***
21648687-ATT-A 19486801-ATT-A 10×T***
21514223-G-A 19352337-G-A FT46687 ***
22447031-C-A 20285145-C-A DYZ19 ***
14143451-C-A 12022745-C-A ***
13811184-G-C 11690478-G-C ***
16581421-C-A 14469541-C-A ***
10873137-C-G ***
7715488-C-A 7847447-C-A ***
18005820-C-A 15893940-C-A P7_Gap ***
13468272-TCCA-T 11312596-TCCA-T ***
17564912-GAAAAA-G,GAA 15453032-GAAAAA-G,GAA 16×A***
13922425-C-A 11801719-C-A ***
17079242-C-G 14967362-C-G ***
16865060-C-A 14753180-C-A ***
7101221-A-G 7233180-A-G ***
15581983-G-A 13470103-G-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B262694911344574799167418265
Kit: B2626941485106792938498284254
Used in age calculations1485106792938498284254
Counts of SNPs44
Variant counts last updated 2020-03-02 03:19:31.



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