Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > Z253 > Z2534 > BY25450 > FGC5618 > FGC5625 > L226 > FGC5660 > Z17669 > ZZ31 > FGC5628 > FGC5659 > BY4103 > ~20140304-G-T > BY65178

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
IN15776
21489331-A-G 19327445-A-G YY+
18109638-C-T 15997758-C-T BY120106 YY+
56878272-T-A **
9980580-T-A 10142971-T-A **
10800799-C-A **
10793461-C-A **
10766367-C-A **
10691265-A-C **
10691262-C-A **
10689729-TCATTCAATTCCATTCCACTACATTCCATTCAACTCCAATA-T **
10679464-C-A **
10647929-C-A **
9881425-A-G 10043816-A-G **
10867029-C-A **
9839484-T-G 10001875-T-G **
9839483-T-G 10001874-T-G **
9080354-C-A 9242745-C-A **
9073978-T-C 9236369-T-C **
9009221-G-T 9171612-G-T **
8974393-G-T 9136784-G-T **
8898937-G-T 9030896-G-T **
8852245-C-A 8984204-C-A **
8768613-AC-A 8900572-AC-A **
10843010-C-A **
10872145-C-A **
8082764-C-A 8214723-C-A **
13643376-T-C 11487700-T-C **
14298833-C-A 12178127-C-A **
14248456-C-A 12127750-C-A **
14228596-T-C 12107890-T-C **
14194266-T-G 12073560-T-G **
14059467-C-A 11938761-C-A **
14051792-C-A 11931086-C-A **
13798738-G-T 11678032-G-T **
11655081-G-T **
11645366-T-C **
13643368-C-T 11487692-C-T **
10893903-C-T **
13643360-C-CATT 11487684-C-CATT **
13485852-C-A 11330176-C-A **
13484034-C-T 11328358-C-T **
13465031-T-C 11309355-T-C **
13270663-C-A 11114987-C-A **
13227296-T-A 11071620-T-A **
11025435-ATT-A **
11017318-T-C **
10980239-C-G **
10941105-C-A **
8383930-C-A 8515889-C-A **
8040179-G-A 8172138-G-A **
14408687-C-A 12287985-C-A **
17046213-C-A 14934333-C-A **
2767334-C-A 2899293-C-A **
2758691-A-T 2890650-A-T **
2708321-A-G 2840280-A-G **
2686473-G-A 2818432-G-A **
2683448-A-G 2815407-A-G **
7335813-C-A 7467772-C-A **
18093336-C-A 15981456-C-A **
19979174-A-AG 17867294-A-AG P5_Prx **
4438025-C-A 4569984-C-A **
10024566-C-A 10186957-C-A **
3362602-C-A 3494561-C-A **
9062248-T-C 9224639-T-C **
14858543-C-A 12746609-C-A **
9127527-TTG-T 9289918-TTG-T **
21325802-C-A 19163916-C-A **
7858191-C-A 7990150-C-A **
23459599-C-A 21297713-C-A **
22598673-T-G 20436787-T-G **
3620883-C-A 3752842-C-A **
15677749-G-T 13565869-G-T **
3284239-CA-C 3416198-CA-C **
3614740-T-G 3746699-T-G 6×TTG**
7824632-C-A 7956591-C-A **
6888688-C-A 7020647-C-A **
7592668-A-G 7724627-A-G **
7292050-C-A 7424009-C-A **
7158934-C-A 7290893-C-A **
7142461-G-A 7274420-G-A **
7131120-C-A 7263079-C-A **
7101212-G-T 7233171-G-T **
7099073-C-A 7231032-C-A **
7092533-C-A 7224492-C-A **
7058201-C-A 7190160-C-A **
6794834-C-A 6926793-C-A **
4129633-G-T 4261592-G-T **
6744381-C-A 6876340-C-A **
6485238-A-G 6617197-A-G **
6368407-C-T 6500366-C-T **
5698708-G-T 5830667-G-T **
5685942-G-A 5817901-G-A **
5069128-A-G 5201087-A-G **
22894151-GA-G 20732265-GA-G 28×A**
4740515-C-A 4872474-C-A **
4293401-C-A 4425360-C-A **
4140931-A-T 4272890-A-T **
14340800-C-A 12220095-C-A **
14423844-T-C 12303119-T-C **
14412440-C-A 12291737-C-A **
22137116-C-A 19975230-C-A **
23033615-T-C 20871729-T-C **
23033606-C-A 20871720-C-A **
23033604-G-A 20871718-G-A **
22598695-A-G 20436809-A-G **
22598670-T-C 20436784-T-C **
22598172-C-A 20436286-C-A **
22207290-C-A 20045404-C-A **
22203935-CT-C 20042049-CT-C **
22155480-G-T 19993594-G-T **
22034172-G-A 19872286-G-A **
23033620-G-A 20871734-G-A **
21909604-C-A 19747718-C-A **
21888651-C-A 19726765-C-A **
21888446-G-C 19726560-G-C **
21436683-C-A 19274797-C-A **
21368750-C-A 19206864-C-A **
21352990-A-G 19191104-A-G **
21283288-G-T 19121402-G-T **
21259401-C-A 19097515-C-A **
21211961-C-A 19050075-C-A **
23033619-T-C 20871733-T-C **
23151371-C-A 20989485-C-A **
21132086-T-A 18970200-T-A **
26440461-C-A 24294314-C-A P1_Y1 **
56875367-G-A **
56841634-G-T **
28797871-T-C 26651724-T-C **
28782367-C-T 26636220-C-T **
28773123-C-A 26626976-C-A **
28763124-G-T 26616977-G-T **
28624025-C-A 26477878-C-A **
27853976-C-A 25707829-C-A P1_Y2 **
26440498-C-A 24294351-C-A P1_Y1 **
26138581-T-C 23992434-T-C P1_Y1 **
23235961-C-A 21074075-C-A **
26001007-GAAAAAT-G 23854860-GAAAAAT-G P1_Y1 **
24470676-C-A 22324529-C-A **
24461812-C-A 22315665-C-A **
24409368-C-A 22263221-C-A **
24389099-T-A 22242952-T-A **
23802364-T-A 21640478-T-A **
23597466-C-A 21435580-C-A **
23529744-C-A 21367858-C-A **
23389683-C-A 21227797-C-A **
23304570-G-T 21142684-G-T **
21162899-C-A 19001013-C-A **
20859117-C-G 18697231-C-G P4_Dst **
17584193-C-A 15472313-C-A **
15770403-T-C 13658523-T-C **
17038357-G-T 14926477-G-T **
16967351-C-A 14855471-C-A **
16750065-C-G 14638185-C-G **
16611947-C-A 14500067-C-A **
16584832-GA-G 14472952-GA-G **
16489399-C-A 14377519-C-A **
15957021-C-A 13845141-C-A **
15865572-C-TTTA 13753692-C-TTTA **
15862582-C-A 13750702-C-A **
15390272-C-A 13278392-C-A **
17310006-A-G 15198126-A-G **
15313826-C-A 13201931-C-A **
15280997-T-C 13169096-T-C **
14835147-C-A 12723214-C-A **
14704767-C-A 12592833-C-A **
14635776-A-G 12523845-A-G **
14590056-A-G 12478256-A-G **
14518895-A-G 12407096-A-G **
14451999-C-A 12331272-C-A **
14424184-AT-A 12303459-AT-A **
17097976-G-A 14986096-G-A **
17367914-G-A 15256034-G-A **
20659324-C-A 18497438-C-A P4_Prx **
18442972-A-ATCCT 16331092-A-ATCCT P6_Dst 4×TCCT**
20508990-AG-A 18347104-AG-A P5_Dst **
20458941-G-T 18297055-G-T P5_Dst **
19966545-C-A 17854665-C-A P5_Prx **
19600435-GTGCGTA-G 17488555-GTGCGTA-G P5_Prx **
19524721-C-A 17412841-C-A **
19067872-A-T 16955992-A-T **
18892508-C-A 16780628-C-A **
18753655-C-A 16641775-C-A **
18516497-C-A 16404617-C-A P6_Dst **
18400980-C-A 16289100-C-A P6_Gap **
17374297-A-G 15262417-A-G **
18289801-G-A 16177921-G-A P6_Prx **
18190014-C-A 16078134-C-A **
18181616-C-A 16069736-C-A **
18173704-C-A 16061824-C-A **
18151862-G-C 16039982-G-C **
18138014-C-A 16026134-C-A **
17803279-C-A 15691399-C-A **
17689345-C-A 15577465-C-A **
17571857-T-C 15459977-T-C **
17470726-C-A 15358846-C-A **
56862441-T-C **
4871592-C-T 5003551-C-T **
15193629-C-A 13081715-C-A **
7339040-C-A 7470999-C-A **
22128585-G-A 19966699-G-A **
24013847-CTATATATATATATATATATATATATA-C 21867700-CTATATATATATATATATATATATATA-C 21×TA**
14518916-C-A 12407117-C-A **
56839419-T-C **
7579069-C-A 7711028-C-A **
16457866-C-A 14345986-C-A **
9400769-C-A 9563160-C-A **
21515861-TC-A 19353975-TC-A **
13454668-T-G 11298992-T-G **
10761138-C-G **
10984518-C-G **
10887450-T-C **
17486351-C-A 15374471-C-A **
11015203-T-C **
21318365-C-A 19156479-C-A **
3622139-C-A 3754098-C-A **
7104141-C-A 7236100-C-A **
10950873-C-A **
9442054-C-A 9604445-C-A **
10860011-A-T **
17301238-CAAAAAAA-C 15189358-CAAAAAAA-C 23×A**
10884732-C-A **
10989569-T-A **
11017380-G-C **
10907765-T-C **
10907756-C-T **
10907749-G-C **
10907724-C-A **
10907721-T-A **
10907711-T-G **
21565084-C-A 19403198-C-A **
10679456-C-A **
18898254-C-A 16786374-C-A **
11017360-A-G **
10984534-T-C **
11017359-A-T **
11017350-A-G **
10669427-T-C **
10669419-A-T **
10669399-C-CT **
56847260-C-G **
56847253-G-C **
56847251-A-C **
14626930-C-A 12514998-C-A **
7646952-C-T 7778911-C-T **
10989536-C-A **
15740496-C-A 13628616-C-A **
21731875-C-A 19569989-C-A Y77028 **
11656687-C-A **
13462348-C-G 11306672-C-G **
13462342-A-T 11306666-A-T **
14551680-C-CA 12439881-C-CA 10×A**
14053676-C-A 11932970-C-A **
13676511-G-A 11520835-G-A FGC58570 **
58912806-T-G 56678065-A-C **
7045677-C-A 7177636-C-A **
15969956-T-TAA 13858076-T-TAA 20×A**
19600395-GGTGT-G 17488515-GGTGT-G P5_Prx 16×GT**
24621257-TG-T 22475110-TG-T P3_t2 **
6786911-A-AT 6918870-A-AT 17×T**
27971764-C-A 25825617-C-A P1_Y2 **
17871704-C-A 15759824-C-A **
15467824-A-G 13355944-A-G PAGES00040 M215 PF1942 Page40 **
28711544-TGG-T 26565397-TGG-T **
15865594-A-T 13753714-A-T **
18892276-ATTTATTTTAT-A 16780396-ATTTATTTTAT-A 7×TTTAT**
58985554-CA-C 56839407-CA-C **
18222356-G-GA 16110476-G-GA 10×A**
5828900-G-T 5960859-G-T **
10748095-C-A **
10770686-A-ATT **
17058553-G-T 14946673-G-T **
10950861-C-A **
20793541-A-AC 18631655-A-AC P4_Prx **
10770692-C-A **
10770684-A-ACTC **
20027998-T-TTA 17916118-T-TTA P5_Prx **
10763001-C-CACTCG **
10870736-C-A **
11017366-T-C **
24751188-G-GTT 22605041-G-GTT P3_b2 15×T**
21617602-C-A 19455716-C-A **
14078800-C-A 11958094-C-A **
10778990-C-T **
7029922-GGAGA-G 7161881-GGAGA-G 10×GA**
11030770-T-G **
27971785-G-T 25825638-G-T P1_Y2 **
4900096-C-A 5032055-C-A **
21639007-C-A 19477121-C-A **
11025427-TCCA-T **
3550572-CT-A 3682531-CT-A **
10866030-T-C **
10859996-C-A **
10907774-T-C **
10984532-C-T **
10691252-C-A **
17608424-C-A 15496544-C-A **
22045698-C-A 19883812-C-A **
16263281-C-A 14151401-C-A **
10860056-C-A **
6461519-C-A 6593478-C-A **
7000606-C-A 7132565-C-A **
10867019-T-C **
4002943-C-A 4134902-C-A **
11643662-T-G **
3680481-C-A 3812440-C-A **
6233724-A-T 6365683-A-T IR3_Dst **
10991212-T-C **
11009963-C-A **
16905869-T-A 14793989-T-A **
20379902-G-T 18218016-G-T P5_Dst **
17831307-G-T 15719427-G-T **
10837607-C-T **
10651852-C-A **
8703191-C-A 8835150-C-A **
4140891-C-A 4272850-C-A **
5650581-TAC-T 5782540-TAC-T **
7254646-C-A 7386605-C-A **
10887455-C-T **
10791896-A-G **
10896293-AATTCCATTCCATTCCATTCCATTCCATTCC-A **
7043570-T-C 7175529-T-C **
13597162-C-A 11441486-C-A **
4582318-C-A 4714277-C-A **
7103430-C-A 7235389-C-A **
10761171-T-G **
14965384-G-T 12853459-G-T **
10860033-A-T **
10787508-G-T **
8369541-C-A 8501500-C-A **
5084420-C-CT 5216379-C-CT 9×T**
15761555-C-A 13649675-C-A **
10659724-C-A **
16476710-C-A 14364830-C-A **
7690096-C-A 7822055-C-A **
21183569-C-A 19021683-C-A **
8817100-C-A 8949059-C-A **
7938147-G-T 8070106-G-T **
3834746-C-A 3966705-C-A **
19949609-T-TG 17837729-T-TG P5_Prx **
13720543-G-T 11564867-G-T **
23393035-C-A 21231149-C-A **
13543186-C-A 11387510-C-A **
16424864-G-T 14312984-G-T **
14486091-C-A 12365360-C-A **
11025449-T-A **
26121883-G-T 23975736-G-T P1_Y1 **
17604960-C-A 15493080-C-A **
26226111-G-T 24079964-G-T P1_Y1 **
3622075-C-A 3754034-C-A ***
14511489-C-A 12399694-C-A ***
21923429-C-A 19761543-C-A ***
9771974-C-A 9934365-C-A ***
10658536-T-A,C ***
21468745-ATTT-A,ATT 19306859-ATTT-A,ATT 25×T***
21924115-G-A 19762229-G-A ***
6350701-C-A 6482660-C-A ***
21738420-CTAT-C 19576534-CTAT-C ***
3603107-C-A 3735066-C-A ***
15323720-C-A 13211838-C-A ***
21140928-C-A 18979042-C-A ***
4215683-G-A 4347642-G-A ***
11643752-T-A ***
9798063-GT-G,GTT 9960454-GT-G,GTT 17×T***
21960839-C-A 19798953-C-A ***
56835489-T-C ***
6177481-TTG-T,TTGTG 6309440-TTG-T,TTGTG IR3_Dst 23×TG***
22164600-C-A 20002714-C-A ***
8107510-CT-C 8239469-CT-C BY390 10×T***
23842055-T-TA 21680169-T-TA 9985496-G-A 11×A***
21457460-T-C 19295574-T-C ***
28600983-ATTTT-A,ATTT 26454836-ATTTT-A,ATTT 17×T***
28548130-G-T 26401983-G-T ***
28544556-C-A 26398409-C-A ***
17052547-CT-C 14940667-CT-C 10×T***
6768762-GAAAAA-G 6900721-GAAAAA-G 17×A***
23515093-C-A 21353207-C-A ***
13468245-C-A 11312569-C-A ***
23262887-C-A 21101001-C-A ***
10868101-C-T ***
22028270-C-A 19866384-C-A ***
15749575-CTT-C,CTTT 13637695-CTT-C,CTTT 15×T***
19412006-GAGAA-G,GAGAAAGAA 17300126-GAGAA-G,GAGAAAGAA 14×AGAA***
21495036-T-TA 19333150-T-TA 8×A***
23013674-C-T 20851788-C-T ***
22687425-C-A 20525539-C-A ***
22627919-T-C 20466033-T-C ***
8061431-C-CTT 8193390-C-CTT 13×T***
2851745-AT-A 2983704-AT-A 9×T***
2883155-C-A 3015114-C-A ***
22524875-C-A 20362989-C-A ***
2907497-T-C 3039456-T-C ***
10983495-C-A ***
10983496-C-G ***
3011812-C-A 3143771-C-A ***
19523553-A-G 17411673-A-G ***
10875755-C-T ***
19107111-C-A 16995231-C-A ***
8837225-C-A 8969184-C-A ***
9786479-C-A 9948870-C-A ***
9467240-C-A 9629631-C-A ***
7655210-TA-T 7787169-TA-T 8×A***
22718608-A-T 20556722-A-T ***
14200742-TTAGATAGATAGA-T,TTAGA 12080036-TTAGATAGATAGA-T,TTAGA 15×TAGA***
14729780-C-A 12617848-C-A ***
15106304-C-A 12994392-C-A ***
21690112-C-A 19528226-C-A ***
15268745-C-A 13156834-C-A ***
15272707-C-A 13160796-C-A ***
15158608-C-A 13046694-C-A ***
8686409-G-A 8818368-G-A ***
8665566-C-A 8797525-C-A ***
8611886-CA-C,CAA 8743845-CA-C,CAA 14×A***
14264294-G-A 12143588-G-A ***
9978088-C-A 10140479-C-A ***
21128259-TAAA-T,TAA 18966373-TAAA-T,TAA 18×A***
10748042-A-T ***
10988584-CTATTC-G,GCATTC ***
10988612-CTCCAC-C,CTCCAA ***
11007712-C-A ***
11009272-C-T ***
11011782-G-A ***
10812466-C-A ***
10748294-C-A ***
14149543-C-A 12028837-C-A ***
14766406-CTT-C,CT 12654475-CTT-C,CT 13×T***
13634131-C-A 11478455-C-A ***
7971536-C-A 8103495-C-A ***
11017391-C-G ***
11648644-GAATGA-G ***
10654199-A-C,T ***
14001078-C-A 11880372-C-A ***
8515308-C-A 8647267-C-A ***
15982269-C-A 13870389-C-A ***
28768386-C-A 26622239-C-A ***
7085098-C-A 7217057-C-A ***
15505494-C-CTA 13393614-C-CTA ***
18145632-C-A 16033752-C-A ***
18169623-C-A 16057743-C-A ***
10884901-C-A ***
14293418-TTCTC-T 12172712-TTCTC-T 11×TC***
10658141-C-A ***
18396569-C-A 16284689-C-A P6_Gap ***
18124701-C-A 16012821-C-A ***
7039526-C-A 7171485-C-A ***
18584198-C-A 16472318-C-A ***
18660772-T-C 16548892-T-C ***
10984430-T-C ***
11033076-G-T ***
19048928-TAAAA-T,TAA 16937048-TAAAA-T,TAA 18×A***
18129623-C-A 16017743-C-A ***
10989539-C-T ***
8171656-T-C 8303615-T-C ***
16988033-TA-T 14876153-TA-T 8×A***
16555190-C-T 14443310-C-T ***
15906517-C-A 13794637-C-A ***
16590622-C-G 14478742-C-G ***
13469407-T-C 11313731-T-C ***
7664914-C-A 7796873-C-A ***
16981773-T-C 14869893-T-C ***
13468253-G-T 11312577-G-T ***
17862577-G-T 15750697-G-T FGC42204 ***
7355261-C-A 7487220-C-A ***
17361058-CAA-C,CA 15249178-CAA-C,CA 25×A***
7308780-C-A 7440739-C-A ***
21751751-G-GTT 19589865-G-GTT 12×T***
17494491-A-G 15382611-A-G ***
17702434-C-A 15590554-C-A ***
17811208-C-A 15699328-C-A ***
21082256-A-AAAGG 18920370-A-AAAGG 8×AAGG***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: IN15776865170170759997023881
Used in age calculations865170170759997023881
Counts of SNPs22
Variant counts last updated 2019-06-17 00:17:50.



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