Green
BigY2: 374065, BigY3: 374065MDKA Birth: Ireland
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 374065 | BigY3 374065 |
---|---|---|---|---|---|---|---|---|---|
22456275-T-C | 20294389-T-C | DYZ19 | A* | ||||||
25544892-T-TA | 23398745-T-TA | P1_gr1 | 9×A | A* | |||||
18462792-G-A | 16350912-G-A | P6_Dst | A* | ||||||
19697449-C-G | 17585569-C-G | P5_Prx | A* | ||||||
19785023-C-A | 17673143-C-A | P5_Prx | A* | ||||||
13961338-G-A | 11840632-G-A | FT80784 | Y | ** | + | ||||
7028910-C-T | 7160869-C-T | BY62883 | Y | + | + | ||||
8530730-A-G | 8662689-A-G | BY73723 | Y | Y | + | + | |||
9490046-T-A | 9652437-T-A | BY79856 | + | + | |||||
13820974-G-A | 11700268-G-A | BY90544 | DYZ17 | + | + | ||||
15398180-T-C | 13286300-T-C | BY101300 | Y | + | + | ||||
15691159-C-T | 13579279-C-T | Y | Y | + | + | ||||
21259242-G-A | 19097356-G-A | BY131515 | Y | Y | + | + | |||
21778623-G-T | 19616737-G-T | BY135395 | Y | Y | + | + | |||
3196713-A-G | 3328672-A-G | FT80335 | + | ||||||
3852435-G-A | 3984394-G-A | FT80402 | + | ||||||
6001270-G-C | 6133229-G-C | FT80659 | + | ||||||
6066430-C-A | 6198389-C-A | FT80668 | + | ||||||
10875752-GTTCCATTCCATTCCA-G | ** | * | |||||||
21691570-A-T | 19529684-A-T | M222 | M2626 S629 | ** | |||||
20424844-G-A | 18262958-G-A | FT452633 | P5_Dst | ** | |||||
22309905-A-T | 20148019-A-T | DYZ19 | ** | ||||||
17128513-C-A | 15016633-C-A | ** | |||||||
18263906-C-A | 16152026-C-A | ** | |||||||
21939618-G-A | 19777732-G-A | PF3817 | ** | ||||||
27699957-C-CAT | 25553810-C-CAT | P1_Y2 | 8×AT | ** | |||||
5534929-C-A | 5666888-C-A | ** | |||||||
24485755-A-T | 22339608-A-T | ** | |||||||
19377256-GAGAA-G | 17265376-GAGAA-G | 4×AGAA | ** | ||||||
13338878-A-G | 11183202-A-G | ** | |||||||
22675588-C-A | 20513702-C-A | ** | |||||||
10753197-T-A | ** | ||||||||
10753255-C-A | ** | ||||||||
10951261-ACCATT-A | ** | ||||||||
14595949-C-A | 12484149-C-A | ** | |||||||
15424795-G-T | 13312915-G-T | ** | |||||||
10781037-TATTCC-T | ** | ||||||||
8462064-CAAAAAAAAA-C | 8594023-CAAAAAAAAA-C | 26×A | ** | ||||||
21464513-C-A | 19302627-C-A | ** | |||||||
21555480-C-A | 19393594-C-A | ** | |||||||
2682819-C-A | 2814778-C-A | ** | |||||||
10778853-C-A | FT430821 | ** | |||||||
11024682-T-C | ** | ||||||||
11673216-C-A | DYZ17 | ** | |||||||
22164546-TCA-T | 20002660-TCA-T | ** | |||||||
15352861-C-CAA | 13240980-C-CAA | 17×A | ** | ||||||
11024677-C-A | ** | ||||||||
10821957-C-A | ** | ||||||||
10859664-C-A | ** | ||||||||
10773839-C-A | ** | ||||||||
13213937-T-G | 11058261-T-G | ** | |||||||
15140755-C-A | 13028842-C-A | ** | |||||||
18346541-C-G | 16234661-C-G | P6_Prx | ** | ||||||
5455223-C-A | 5587182-C-A | ** | |||||||
18892141-C-A | 16780261-C-A | ** | |||||||
10801005-A-T | ** | ||||||||
10801032-T-C | ** | ||||||||
5336697-T-A | 5468656-T-A | FT32145 | FT32145 | 12×A | ** | ||||
10911675-G-A | ** | ||||||||
11024683-C-G | ** | ||||||||
11024685-C-A | ** | ||||||||
26199709-G-T | 24053562-G-T | P1_Y1 | ** | ||||||
7299149-C-A | 7431108-C-A | ** | |||||||
5066032-TA-T | 5197991-TA-T | 10×A | ** | ||||||
11006836-C-G | ** | ||||||||
56756928-G-A | ** | ||||||||
56756929-G-T | ** | ||||||||
18303264-A-G | 16191384-A-G | P6_Prx | ** | ||||||
20603903-G-T | 18442017-G-T | P5_Dst | ** | ||||||
10678635-T-C | ** | ||||||||
10678639-A-G | ** | ||||||||
10678645-T-A | ** | ||||||||
11036174-C-A | ** | ||||||||
56845340-G-A | ** | ||||||||
28804413-G-A | 26658266-G-A | ** | |||||||
11672031-C-A | DYZ17 | ** | |||||||
17481286-C-A | 15369406-C-A | ** | |||||||
10932686-G-T | ** | ||||||||
28481066-C-A | 26334919-C-A | ** | |||||||
10877826-T-TGCATG | ** | ||||||||
10985309-C-A | ** | ||||||||
11033623-T-A | ** | ||||||||
14201846-CA-C | 12081140-CA-C | 8×A | ** | ||||||
18346517-GTA-G | 16234637-GTA-G | P6_Prx | ** | ||||||
7461781-G-T | 7593740-G-T | IR1_L | ** | ||||||
9117162-C-A | 9279553-C-A | ** | |||||||
4449119-C-A | 4581078-C-A | ** | |||||||
10779281-CCCATT-C | ** | ||||||||
9657404-CA-C | 9819795-CA-C | IR3_Prx | 12×A | ** | |||||
10992369-C-A | ** | ||||||||
21890918-C-T | 19729032-C-T | ** | |||||||
18738153-C-A | 16626273-C-A | ** | |||||||
10759853-T-C | ** | ||||||||
4769489-C-A | 4901448-C-A | YFS287299 | ** | ||||||
10688077-T-C | ** | ||||||||
6664399-G-T | 6796358-G-T | ** | |||||||
2833359-A-AT | 2965318-A-AT | 9×T | ** | ||||||
10843793-C-A | ** | ||||||||
10772115-C-A | ** | ||||||||
17274232-C-A | 15162352-C-A | ** | |||||||
6177555-C-A | 6309514-C-A | IR3_Dst | ** | ||||||
10861273-G-T | ** | ||||||||
2783690-C-A | 2915649-C-A | ** | |||||||
10808045-C-A | ** | ||||||||
10985280-G-T | ** | ||||||||
10985283-C-T | ** | ||||||||
10782774-C-A | ** | ||||||||
10980885-C-A | ** | ||||||||
21623841-G-T | 19461955-G-T | ** | |||||||
10768690-T-C | ** | ||||||||
20603892-G-T | 18442006-G-T | P5_Dst | ** | ||||||
22316380-C-A | 20154494-C-A | DYZ19 | ** | ||||||
4223250-C-A | 4355209-C-A | ** | |||||||
14846833-A-G | 12734899-A-G | ** | |||||||
4376307-G-T | 4508266-G-T | ** | |||||||
6911627-C-A | 7043586-C-A | ** | |||||||
13235380-C-A | 11079704-C-A | ** | |||||||
10672268-C-A | ** | ||||||||
13221956-C-A | 11066280-C-A | ** | |||||||
22045673-C-A | 19883787-C-A | ** | |||||||
19547739-C-A | 17435859-C-A | ** | |||||||
10825656-C-A | ** | ||||||||
10825659-T-A | ** | ||||||||
11027070-A-T | ** | ||||||||
7075954-C-A | 7207913-C-A | ** | |||||||
6976618-C-A | 7108577-C-A | ** | |||||||
11645777-C-A | DYZ17 | ** | |||||||
14658222-C-A | 12546287-C-A | ** | |||||||
16558571-C-A | 14446691-C-A | ** | |||||||
14461414-C-A | 12340687-C-A | ** | |||||||
10899744-C-A | ** | ||||||||
11007530-T-C | ** | ||||||||
28469276-C-A | 26323129-C-A | ** | |||||||
10944545-G-T | ** | ||||||||
10801006-A-G | ** | ||||||||
18996446-C-A | 16884566-C-A | ** | |||||||
14142475-C-A | 12021769-C-A | ** | |||||||
15532543-C-A | 13420663-C-A | ** | |||||||
56845335-TG-T | ** | ||||||||
56845352-T-A | ** | ||||||||
10870936-C-A | ** | ||||||||
18793594-G-T | 16681714-G-T | ** | |||||||
15049481-C-G | 12937572-C-G | ** | |||||||
4867594-G-C | 4999553-G-C | ** | |||||||
3706729-A-T | 3838688-A-T | ** | |||||||
22811137-C-A | 20649251-C-A | ** | |||||||
10986196-G-T | ** | ||||||||
21911942-C-A | 19750056-C-A | ** | |||||||
9574854-A-AG | 9737245-A-AG | IR3_Prx | ** | ||||||
10667171-GTCCAC-G | ** | ||||||||
3706761-C-A | 3838720-C-A | ** | |||||||
5084420-C-CT | 5216379-C-CT | 9×T | ** | ||||||
7619077-C-A | 7751036-C-A | ** | |||||||
14568343-C-A | 12456543-C-A | ** | |||||||
13643069-C-A | 11487393-C-A | ** | |||||||
14241263-C-A | 12120557-C-A | ** | |||||||
56839242-G-T | ** | ||||||||
11027048-C-G | ** | ||||||||
21827863-C-A | 19665977-C-A | ** | |||||||
10780251-G-T | ** | ||||||||
14846874-G-T | 12734940-G-T | ** | |||||||
19558135-C-A | 17446255-C-A | ** | |||||||
4527381-C-A | 4659340-C-A | ** | |||||||
10818653-T-C | ** | ||||||||
19523409-C-A | 17411529-C-A | ** | |||||||
10801022-T-G | ** | ||||||||
10801045-T-A | ** | ||||||||
6264621-C-A | 6396580-C-A | IR3_Dst | ** | ||||||
10922297-C-T | ** | ||||||||
9942042-TA-T | 10104433-TA-T | ** | |||||||
10801036-ATTACC-A | ** | ||||||||
23439054-A-T | 21277168-A-T | 10×T | ** | ||||||
14859094-C-A | 12747160-C-A | ** | |||||||
20832294-C-A | 18670408-C-A | P4_Gap | ** | ||||||
15503331-C-A | 13391451-C-A | ** | |||||||
10776716-C-A | ** | ||||||||
28774065-C-A | 26627918-C-A | ** | |||||||
10839040-C-CGGAAG | ** | ||||||||
10839054-C-G | ** | ||||||||
10987406-TTCCAC-T | ** | ||||||||
16233446-C-A | 14121566-C-A | ** | |||||||
21615986-T-C | 19454100-T-C | ** | |||||||
16823952-T-TAA | 14712072-T-TAA | 17×A | ** | ||||||
6085937-C-A | 6217896-C-A | ** | |||||||
18904407-C-A | 16792527-C-A | ** | |||||||
11035157-C-A | ** | ||||||||
14846868-T-G | 12734934-T-G | ** | |||||||
11027064-C-CAA | ** | ||||||||
23167819-C-A | 21005933-C-A | ** | |||||||
6926226-C-A | 7058185-C-A | ** | |||||||
11007545-C-T | ** | ||||||||
5785812-C-A | 5917771-C-A | ** | |||||||
17115054-C-A | 15003174-C-A | ** | |||||||
4257485-C-A | 4389444-C-A | ** | |||||||
11027066-C-CCAT | ** | ||||||||
10927765-G-T | ** | ||||||||
3500459-C-A | 3632418-C-A | ** | |||||||
10877072-C-A | ** | ||||||||
7541049-G-T | 7673008-G-T | ** | |||||||
9559464-A-T | 9721855-A-T | IR3_Prx | ** | ||||||
10951275-T-C | ** | ||||||||
14428768-C-A | 12308043-C-A | ** | |||||||
2811066-C-A | 2943025-C-A | ** | |||||||
2812963-T-G | 2944922-T-G | ** | |||||||
2843959-G-T | 2975918-G-T | ** | |||||||
3071797-C-A | 3203756-C-A | ** | |||||||
3359369-G-A | 3491328-G-A | ** | |||||||
3684375-G-T | 3816334-G-T | ** | |||||||
3695950-A-G | 3827909-A-G | ** | |||||||
3701886-G-T | 3833845-G-T | ** | |||||||
3823647-T-C | 3955606-T-C | ** | |||||||
4867571-A-T | 4999530-A-T | ** | |||||||
4920608-T-C | 5052567-T-C | ** | |||||||
5011419-A-T | 5143378-A-T | ** | |||||||
5040318-G-A | 5172277-G-A | ** | |||||||
5256429-T-C | 5388388-T-C | ** | |||||||
5601643-G-C | 5733602-G-C | ** | |||||||
5601650-A-C | 5733609-A-C | ** | |||||||
5777969-A-G | 5909928-A-G | ** | |||||||
5927241-A-C | 6059200-A-C | ** | |||||||
6110070-G-T | 6242029-G-T | ** | |||||||
6144487-C-A | 6276446-C-A | IR3_Dst | ** | ||||||
6366417-C-A | 6498376-C-A | ** | |||||||
6505011-C-G | 6636970-C-G | ** | |||||||
6541085-C-A | 6673044-C-A | ** | |||||||
6615081-C-A | 6747040-C-A | ** | |||||||
6791801-AC-A | 6923760-AC-A | ** | |||||||
6833414-C-A | 6965373-C-A | ** | |||||||
6885263-A-C | 7017222-A-C | ** | |||||||
7048367-G-T | 7180326-G-T | ** | |||||||
7123360-C-T | 7255319-C-T | ** | |||||||
7182174-T-G | 7314133-T-G | ** | |||||||
7286994-C-A | 7418953-C-A | ** | |||||||
7391644-C-A | 7523603-C-A | ** | |||||||
7404118-C-A | 7536077-C-A | ** | |||||||
7414277-C-CAA | 7546236-C-CAA | 27×A | ** | ||||||
7646066-C-A | 7778025-C-A | ** | |||||||
7776690-C-A | 7908649-C-A | ** | |||||||
8040127-C-A | 8172086-C-A | ** | |||||||
8077767-A-G | 8209726-A-G | ** | |||||||
8140072-TA-T | 8272031-TA-T | ** | |||||||
8221396-C-A | 8353355-C-A | ** | |||||||
8282453-A-G | 8414412-A-G | ** | |||||||
8376189-G-A | 8508148-G-A | ** | |||||||
8462082-A-G | 8594041-A-G | ** | |||||||
8462084-AAAAAAAGAC-A | 8594043-AAAAAAAGAC-A | ** | |||||||
8690831-T-C | 8822790-T-C | ** | |||||||
8785419-A-G | 8917378-A-G | ** | |||||||
8878867-A-T | 9010826-A-T | FT185841 | ** | ||||||
9024086-C-A | 9186477-C-A | ** | |||||||
9056570-C-A | 9218961-C-A | ** | |||||||
9482565-C-A | 9644956-C-A | ** | |||||||
9639050-A-T | 9801441-A-T | IR3_Prx | ** | ||||||
9927463-A-G | 10089854-A-G | ** | |||||||
9927466-A-G | 10089857-A-G | ** | |||||||
9927472-A-G | 10089863-A-G | ** | |||||||
9997119-C-A | 10159510-C-A | ** | |||||||
10051545-G-A | 10213936-G-A | ** | |||||||
10668322-T-C | ** | ||||||||
10754672-C-T | ** | ||||||||
10754678-T-TG | ** | ||||||||
10754681-TC-T | ** | ||||||||
10768666-T-G | ** | ||||||||
10775003-C-A | ** | ||||||||
10827237-C-A | ** | ||||||||
10876156-C-A | ** | ||||||||
10906134-CT-C | ** | ||||||||
10922303-C-T | ** | ||||||||
10940930-C-A | ** | ||||||||
10950275-C-A | ** | ||||||||
10982815-C-A | ** | ||||||||
10989158-A-G | ** | ||||||||
10993192-C-A | ** | ||||||||
11007532-C-G | ** | ||||||||
11007535-TGCCAC-T | ** | ||||||||
11018178-C-A | ** | ||||||||
11020415-C-A | ** | ||||||||
11024635-CTCCAT-C | ** | ||||||||
11033657-T-A | ** | ||||||||
11034242-C-A | ** | ||||||||
11036135-C-A | ** | ||||||||
11036144-CACCTC-A | ** | ||||||||
11036161-A-C | ** | ||||||||
11036185-C-G | ** | ||||||||
11037752-C-A | ** | ||||||||
13263104-G-A | 11107428-G-A | ** | |||||||
13319560-T-C | 11163884-T-C | ** | |||||||
13328773-C-A | 11173097-C-A | ** | |||||||
11662386-G-T | DYZ17 | ** | |||||||
13921597-T-C | 11800891-T-C | ** | |||||||
13922352-G-GAA | 11801646-G-GAA | ** | |||||||
14032675-T-C | 11911969-T-C | FT329009 | ** | ||||||
14155735-CA-C | 12035029-CA-C | ** | |||||||
14314126-A-G | 12193420-A-G | ** | |||||||
14396717-C-A | 12276013-C-A | ** | |||||||
14397393-C-A | 12276689-C-A | ** | |||||||
14471856-G-A | 12351125-G-A | ** | |||||||
12374407-C-A | ** | ||||||||
14540633-G-T | 12428834-G-T | ** | |||||||
14567085-C-A | 12455285-C-A | ** | |||||||
14846840-C-T | 12734906-C-T | ** | |||||||
14846864-T-C | 12734930-T-C | ** | |||||||
14846886-C-T | 12734952-C-T | ** | |||||||
14969104-T-C | 12857179-T-C | ** | |||||||
15049488-T-C | 12937579-T-C | FT36926 | ** | ||||||
15049489-G-A | 12937580-G-A | ** | |||||||
15049492-G-A | 12937583-G-A | ** | |||||||
15103799-C-A | 12991887-C-A | ** | |||||||
15133447-T-C | 13021534-T-C | ** | |||||||
15151525-AG-T | 13039612-AG-T | ** | |||||||
15181749-A-C | 13069835-A-C | ** | |||||||
15320827-C-A | 13208945-C-A | ** | |||||||
15475001-C-A | 13363121-C-A | ** | |||||||
15510602-G-T | 13398722-G-T | ** | |||||||
15573559-C-G | 13461679-C-G | ** | |||||||
15573565-A-G | 13461685-A-G | ** | |||||||
15573569-C-T | 13461689-C-T | ** | |||||||
15573569-C-CACTGCA | 13461689-C-CACTGCA | ** | |||||||
15664038-A-C | 13552158-A-C | ** | |||||||
15670336-T-A | 13558456-T-A | ** | |||||||
15731103-C-A | 13619223-C-A | ** | |||||||
15973093-A-G | 13861213-A-G | ** | |||||||
16042744-C-A | 13930864-C-A | ** | |||||||
16070919-G-T | 13959039-G-T | ** | |||||||
16375954-C-T | 14264074-C-T | ** | |||||||
16375957-A-C | 14264077-A-C | ** | |||||||
16375954-CA-C | 14264074-CA-C | ** | |||||||
16488849-C-A | 14376969-C-A | ** | |||||||
16510205-C-A | 14398325-C-A | ** | |||||||
16514086-C-A | 14402206-C-A | ** | |||||||
16602916-C-A | 14491036-C-A | ** | |||||||
16612385-C-A | 14500505-C-A | ** | |||||||
16781390-C-A | 14669510-C-A | ** | |||||||
16826488-C-A | 14714608-C-A | ** | |||||||
16888993-T-G | 14777113-T-G | ** | |||||||
16905438-A-G | 14793558-A-G | FT277492 | ** | ||||||
17072701-C-A | 14960821-C-A | ** | |||||||
17178730-C-A | 15066850-C-A | ** | |||||||
17194960-C-A | 15083080-C-A | ** | |||||||
17222688-T-C | 15110808-T-C | ** | |||||||
17319808-G-T | 15207928-G-T | ** | |||||||
17375261-G-T | 15263381-G-T | ** | |||||||
17420406-C-A | 15308526-C-A | ** | |||||||
17494599-G-A | 15382719-G-A | FT176285 | ** | ||||||
17548746-A-G | 15436866-A-G | ** | |||||||
17678998-C-A | 15567118-C-A | ** | |||||||
17691969-C-A | 15580089-C-A | ** | |||||||
17750951-A-G | 15639071-A-G | ** | |||||||
17928186-C-A | 15816306-C-A | ** | |||||||
18267567-C-A | 16155687-C-A | ** | |||||||
18343803-A-T | 16231923-A-T | P6_Prx | ** | ||||||
18345958-A-C | 16234078-A-C | P6_Prx | ** | ||||||
18366154-A-C | 16254274-A-C | P6_Prx | ** | ||||||
18420352-C-A | 16308472-C-A | P6_Gap | ** | ||||||
18873727-C-A | 16761847-C-A | ** | |||||||
18905329-C-A | 16793449-C-A | ** | |||||||
19053270-T-G | 16941390-T-G | ** | |||||||
19187681-C-G | 17075801-C-G | ** | |||||||
19268996-C-A | 17157116-C-A | ** | |||||||
19411173-G-T | 17299293-G-T | ** | |||||||
19490955-G-T | 17379075-G-T | ** | |||||||
19600491-G-GGT | 17488611-G-GGT | P5_Prx | ** | ||||||
19733306-C-CG | 17621426-C-CG | P5_Prx | ** | ||||||
19820143-T-G | 17708263-T-G | P5_Prx | ** | ||||||
20040498-C-A | 17928618-C-A | P5_Prx | ** | ||||||
20635073-A-T | 18473187-A-T | P4_Prx | ** | ||||||
20635100-A-T | 18473214-A-T | P4_Prx | ** | ||||||
21047776-C-A | 18885890-C-A | ** | |||||||
21049344-T-C | 18887458-T-C | ** | |||||||
21154424-C-A | 18992538-C-A | ** | |||||||
21206826-C-A | 19044940-C-A | ** | |||||||
21560091-C-A | 19398205-C-A | ** | |||||||
21615978-C-T | 19454092-C-T | ** | |||||||
21790108-G-T | 19628222-G-T | ** | |||||||
21828566-G-A | 19666680-G-A | ** | |||||||
22063853-C-A | 19901967-C-A | ** | |||||||
22199590-A-G | 20037704-A-G | ** | |||||||
22211715-C-A | 20049829-C-A | ** | |||||||
22834575-C-A | 20672689-C-A | ** | |||||||
22843666-C-A | 20681780-C-A | ** | |||||||
22881510-A-G | 20719624-A-G | ** | |||||||
22915945-G-A | 20754059-G-A | ** | |||||||
22965866-C-A | 20803980-C-A | ** | |||||||
23003669-C-A | 20841783-C-A | ** | |||||||
23046184-A-G | 20884298-A-G | ** | |||||||
23464219-T-G | 21302333-T-G | ** | |||||||
23471072-G-T | 21309186-G-T | ** | |||||||
23633530-G-A | 21471644-G-A | ** | |||||||
23779655-G-T | 21617769-G-T | ** | |||||||
23852032-AATAAT-A | 21690146-AATAAT-A | ** | |||||||
23865934-C-A | 21704048-C-A | ** | |||||||
24052431-A-G | 21906284-A-G | P3_b1 | ** | ||||||
24220856-A-G | 22074709-A-G | P3_b1 | ** | ||||||
24363589-C-A | 22217442-C-A | ** | |||||||
24449899-T-C | 22303752-T-C | ** | |||||||
24485784-A-T | 22339637-A-T | ** | |||||||
25959330-G-C | 23813183-G-C | P1_Y1 | ** | ||||||
27919417-C-A | 25773270-C-A | P1_Y2 | ** | ||||||
28505163-C-A | 26359016-C-A | ** | |||||||
28520708-C-T | 26374561-C-T | ** | |||||||
28632868-C-A | 26486721-C-A | ** | |||||||
28720205-T-A | 26574058-T-A | ** | |||||||
28748532-C-A | 26602385-C-A | ** | |||||||
28775437-A-G | 26629290-A-G | ** | |||||||
56828004-C-T | ** | ||||||||
56840769-G-T | ** | ||||||||
56845353-G-A | ** | ||||||||
56870784-G-T | ** | ||||||||
4300670-T-C | 4432629-T-C | ** | |||||||
9636787-T-A | 9799178-T-A | IR3_Prx | ** | ||||||
10026995-ATATT-A | 10189386-ATATT-A | 5×TATT | ** | ||||||
14786587-T-C | 12674657-T-C | ** | |||||||
19871630-T-C | 17759750-T-C | P5_Prx | ** | ||||||
20474465-A-AT | 18312579-A-AT | P5_Dst | ** | ||||||
20711523-T-A | 18549637-T-A | P4_Prx | ** | ||||||
21055702-A-C | 18893816-A-C | ** | |||||||
26487987-A-T | 24341840-A-T | P1_Y1 | ** | ||||||
27854947-G-T | 25708800-G-T | P1_Y2 | ** | ||||||
13454293-A-T | 11298617-A-T | *** | |||||||
7421884-TA-T | 7553843-TA-T | 10×A | *** | ||||||
5179541-T-C | 5311500-T-C | Z38491 | 8×AC | *** | |||||
8459392-ATTAT-A | 8591351-ATTAT-A | 6×TTAT | *** | ||||||
26730271-A-G | 24584124-A-G | P1_g2 | *** | ||||||
13488759-C-T | 11333083-C-T | *** | |||||||
7139608-ATTT-A | 7271567-ATTT-A | 17×T | *** | ||||||
6778946-C-A | 6910905-C-A | *** | |||||||
13454290-T-A | 11298614-T-A | *** | |||||||
13453201-G-A | 11297525-G-A | *** | |||||||
13454333-G-C | 11298657-G-C | *** | |||||||
18756798-GTT-G,GT | 16644918-GTT-G,GT | 19×T | *** | ||||||
10911740-A-C,G | *** | ||||||||
8314146-CTTTTTTTTT-C | 8446105-CTTTTTTTTT-C | 24×T | *** | ||||||
9446086-G-T | 9608477-G-T | *** | |||||||
10667026-T-C | *** | ||||||||
10845610-T-G | *** | ||||||||
15876360-CAA-C,CA | 13764480-CAA-C,CA | 21×A | *** | ||||||
56827361-C-A | *** | ||||||||
10951241-C-T | *** | ||||||||
56835530-A-C,G | *** | ||||||||
11005491-G-A,T | *** | ||||||||
9991637-CTTTT-C | 10154028-CTTTT-C | 20×T | *** | ||||||
20723277-CTTT-C | 18561391-CTTT-C | P4_Prx | 15×T | *** | |||||
10825242-T-A | *** | ||||||||
15106356-TA-T | 12994444-TA-T | 10×A | *** | ||||||
10776988-TATTCC-T | *** | ||||||||
18871925-C-A | 16760045-C-A | *** | |||||||
23997524-C-A | 21851377-C-A | *** | |||||||
14357635-C-A | 12236930-C-A | *** | |||||||
13454317-CATTCT-C | 11298641-CATTCT-C | *** | |||||||
15230842-CT-C,CTT | 13118928-CT-C,CTT | 13×T | *** | ||||||
16959453-C-CAA | 14847573-C-CAA | 13×A | *** | ||||||
10979790-C-A | *** | ||||||||
16345194-C-A | 14233314-C-A | *** | |||||||
8025155-CAA-C,CA | 8157114-CAA-C,CA | 14×A | *** | ||||||
10875741-C-A | *** | ||||||||
17128701-C-A | 15016821-C-A | *** | |||||||
15770619-G-T | 13658739-G-T | *** | |||||||
10673421-C-A | *** | ||||||||
10764995-C-A | *** | ||||||||
22792927-C-A | 20631041-C-A | *** | |||||||
13488747-A-G,T | 11333071-A-G,T | *** | |||||||
15174670-C-A | 13062756-C-A | *** | |||||||
18165126-CAAAA-C | 16053246-CAAAA-C | 13×A | *** | ||||||
15661777-C-A | 13549897-C-A | *** | |||||||
10803118-C-A | *** | ||||||||
10808555-C-A | *** | ||||||||
10668327-C-A | *** | ||||||||
6930407-C-A | 7062366-C-A | *** | |||||||
13453214-CA-T | 11297538-CA-T | *** | |||||||
9023106-G-T | 9185497-G-T | *** | |||||||
10798341-C-A | *** | ||||||||
10815090-A-G | *** | ||||||||
13488839-CGGT-C,CAGG | 11333163-CGGT-C,CAGG | *** | |||||||
3363318-C-CT | 3495277-C-CT | 15×T | *** | ||||||
19509410-C-A | 17397530-C-A | FTA29067 | *** | ||||||
11004966-C-A | *** | ||||||||
17491653-C-A | 15379773-C-A | *** | |||||||
56826383-G-C,T | *** | ||||||||
14540285-C-A | 12428486-C-A | *** | |||||||
7330645-C-A | 7462604-C-A | *** | |||||||
23208221-C-A | 21046335-C-A | *** | |||||||
2686603-T-TA,TAA | 2818562-T-TA,TAA | 16×A | *** | ||||||
2861968-C-A | 2993927-C-A | *** | |||||||
4925653-G-A | 5057612-G-A | *** | |||||||
5865208-C-A | 5997167-C-A | *** | |||||||
6849324-C-A | 6981283-C-A | *** | |||||||
7866231-C-A | 7998190-C-A | *** | |||||||
8019827-A-G | 8151786-A-G | *** | |||||||
8270156-G-T | 8402115-G-T | *** | |||||||
8428932-C-T | 8560891-C-T | *** | |||||||
8649830-G-T | 8781789-G-T | *** | |||||||
8765613-A-G | 8897572-A-G | *** | |||||||
9069909-G-T | 9232300-G-T | *** | |||||||
9513618-C-A | 9676009-C-A | *** | |||||||
9961366-G-T | 10123757-G-T | *** | |||||||
10668312-T-C | *** | ||||||||
10677416-C-A | *** | ||||||||
10760676-C-T | *** | ||||||||
10773284-C-A | FT430576 | *** | |||||||
10794414-C-A | *** | ||||||||
10814741-C-T | *** | ||||||||
10889910-C-A | *** | ||||||||
10911697-A-G,T | *** | ||||||||
10921118-CTCCATTCCATTCCAT-C | *** | *** | |||||||
10962947-C-T | *** | ||||||||
11003830-A-G | *** | ||||||||
11005013-C-A | *** | ||||||||
13677143-C-A | 11521467-C-A | DYZ17 | *** | ||||||
11665014-G-A | DYZ17 | *** | |||||||
13922352-G-A | 11801646-G-A | *** | |||||||
14060785-A-G | 11940079-A-G | *** | |||||||
14403083-G-GT | 12282380-G-GT | 8×T | *** | ||||||
14462392-C-A | 12341665-C-A | *** | |||||||
15053064-C-A | 12941155-C-A | *** | |||||||
15215650-C-A | 13103736-C-A | *** | |||||||
15317964-C-A | 13206070-C-A | *** | |||||||
15434275-C-A | 13322395-C-A | *** | |||||||
15448217-T-TAAA | 13336337-T-TAAA | 12×A | *** | ||||||
15505127-C-A | 13393247-C-A | *** | |||||||
15543950-C-A | 13432070-C-A | *** | |||||||
15969961-A-T | 13858081-A-T | *** | |||||||
16264509-T-C | 14152629-T-C | *** | |||||||
16275927-T-C | 14164047-T-C | *** | |||||||
16834343-C-A | 14722463-C-A | *** | |||||||
16836043-C-A | 14724163-C-A | *** | |||||||
16907297-C-A | 14795417-C-A | *** | |||||||
16940921-C-A | 14829041-C-A | *** | |||||||
16952382-C-A | 14840502-C-A | *** | |||||||
17020394-C-A | 14908514-C-A | *** | |||||||
17052564-C-A | 14940684-C-A | BY203568 | *** | ||||||
17459536-T-C | 15347656-T-C | *** | |||||||
18685210-C-A | 16573330-C-A | *** | |||||||
19060670-C-A | 16948790-C-A | *** | |||||||
19130379-C-A | 17018499-C-A | *** | |||||||
19489502-G-A | 17377622-G-A | *** | |||||||
19800016-GA-G | 17688136-GA-G | P5_Prx | *** | ||||||
21066676-G-A | 18904790-G-A | *** | |||||||
21147436-C-A | 18985550-C-A | *** | |||||||
21392269-T-A | 19230383-T-A | *** | |||||||
22036984-C-A | 19875098-C-A | *** | |||||||
22590259-A-G | 20428373-A-G | *** | |||||||
22842884-A-G | 20680998-A-G | *** | |||||||
23412318-T-C | 21250432-T-C | *** | |||||||
24470669-A-G | 22324522-A-G | *** | |||||||
26908718-C-A | 24762571-C-A | P1_r3 | *** | ||||||
28590624-C-A | 26444477-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.