Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > FGC11134 > A353 > Z16250 > A114 > CTS4466/S1136 > S1115 > A541 > Z21065 > A195 > A761 > Z16254 > A154

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
374065
BigY3
374065
28810647-G-C 26664500-G-C A*
19697449-C-G 17585569-C-G P5_Prx A*
19630651-A-C 17518771-A-C P5_Prx A*
25544892-T-TA 23398745-T-TA P1_gr1 9×AA*
18462792-G-A 16350912-G-A P6_Dst A*
5486366-G-C 5618325-G-C A*
22456275-T-C 20294389-T-C DYZ19 A*
19785023-C-A 17673143-C-A P5_Prx A*
6001270-G-C 6133229-G-C FT80659 +
13820974-G-A 11700268-G-A BY90544 ++
15691159-C-T 13579279-C-T YY++
21778623-G-T 19616737-G-T BY135395 YY++
9490046-T-A 9652437-T-A BY79856 ++
7028910-C-T 7160869-C-T BY62883 Y++
3196713-A-G 3328672-A-G FT80335 +
3852435-G-A 3984394-G-A FT80402 +
21259242-G-A 19097356-G-A BY131515 YY++
6066430-C-A 6198389-C-A FT80668 +
13961338-G-A 11840632-G-A FT80784 Y**+
15398180-T-C 13286300-T-C BY101300 Y++
8530730-A-G 8662689-A-G BY73723 YY++
14320651-C-CT 12199945-C-CT 12×T*
10875752-GTTCCATTCCATTCCA-G ***
4282570-TAC-T 4414529-TAC-T 17×AC*
10876156-C-A **
10982815-C-A **
10993192-C-A **
10940930-C-A **
10989158-A-G **
10922303-C-T **
10906134-CT-C **
10950275-C-A **
27854947-G-T 25708800-G-T P1_Y2 **
10827237-C-A **
10775003-C-A **
10768666-T-G **
10754681-TC-T **
10754678-T-TG **
11007532-C-G **
10668322-T-C **
10051545-G-A 10213936-G-A **
9997119-C-A 10159510-C-A **
9927472-A-G 10089863-A-G **
9927466-A-G 10089857-A-G **
9927463-A-G 10089854-A-G **
10754672-C-T **
11036144-CACCTC-A **
11007535-TGCCAC-T **
13921597-T-C 11800891-T-C **
14846864-T-C 12734930-T-C **
14846840-C-T 12734906-C-T **
14567085-C-A 12455285-C-A **
14540633-G-T 12428834-G-T **
12374407-C-A **
14471856-G-A 12351125-G-A **
14397393-C-A 12276689-C-A **
14396717-C-A 12276013-C-A **
14314126-A-G 12193420-A-G **
14155735-CA-C 12035029-CA-C **
14032675-T-C 11911969-T-C **
13922352-G-GAA 11801646-G-GAA **
11662386-G-T **
11018178-C-A **
13490724-C-A 11335048-C-A **
13328773-C-A 11173097-C-A **
13319560-T-C 11163884-T-C **
13263104-G-A 11107428-G-A **
11037752-C-A **
11036185-C-G **
11036161-A-C **
11036135-C-A **
11034242-C-A **
11033657-T-A **
11024635-CTCCAT-C **
11020415-C-A **
9639050-A-T 9801441-A-T IR3_Prx **
8376189-G-A 8508148-G-A **
9482565-C-A 9644956-C-A **
3684375-G-T 3816334-G-T **
5927241-A-C 6059200-A-C **
5777969-A-G 5909928-A-G **
5601643-G-C 5733602-G-C **
5256429-T-C 5388388-T-C **
5040318-G-A 5172277-G-A **
5011419-A-T 5143378-A-T **
4920608-T-C 5052567-T-C **
4867571-A-T 4999530-A-T **
3823647-T-C 3955606-T-C **
3701886-G-T 3833845-G-T **
3695950-A-G 3827909-A-G **
3359369-G-A 3491328-G-A **
6144487-C-A 6276446-C-A IR3_Dst **
3071797-C-A 3203756-C-A **
2843959-G-T 2975918-G-T **
2812963-T-G 2944922-T-G **
2811066-C-A 2943025-C-A **
14428768-C-A 12308043-C-A **
10951275-T-C **
9559464-A-T 9721855-A-T IR3_Prx **
7541049-G-T 7673008-G-T **
10877072-C-A **
3500459-C-A 3632418-C-A **
10927765-G-T **
11027066-C-CCAT **
6110070-G-T 6242029-G-T **
6366417-C-A 6498376-C-A **
9056570-C-A 9218961-C-A **
7776690-C-A 7908649-C-A **
9024086-C-A 9186477-C-A **
8878867-A-T 9010826-A-T **
8785419-A-G 8917378-A-G **
8690831-T-C 8822790-T-C **
8462084-AAAAAAAGAC-A 8594043-AAAAAAAGAC-A **
8462082-A-G 8594041-A-G **
14969104-T-C 12857179-T-C **
8282453-A-G 8414412-A-G **
8221396-C-A 8353355-C-A **
8140072-TA-T 8272031-TA-T **
8077767-A-G 8209726-A-G **
8040127-C-A 8172086-C-A **
7646066-C-A 7778025-C-A **
6505011-C-G 6636970-C-G **
7414277-C-CAA 7546236-C-CAA 27×A**
7404118-C-A 7536077-C-A **
7391644-C-A 7523603-C-A **
7286994-C-A 7418953-C-A **
7182174-T-G 7314133-T-G **
7123360-C-T 7255319-C-T **
7048367-G-T 7180326-G-T **
6885263-A-C 7017222-A-C **
6833414-C-A 6965373-C-A **
6791801-AC-A 6923760-AC-A **
6615081-C-A 6747040-C-A **
6541085-C-A 6673044-C-A **
14846886-C-T 12734952-C-T **
15510602-G-T 13398722-G-T **
15049488-T-C 12937579-T-C FT36926 **
22834575-C-A 20672689-C-A **
23852032-AATAAT-A 21690146-AATAAT-A **
23779655-G-T 21617769-G-T **
23633530-G-A 21471644-G-A **
23471072-G-T 21309186-G-T **
23464219-T-G 21302333-T-G **
23046184-A-G 20884298-A-G **
23003669-C-A 20841783-C-A **
22965866-C-A 20803980-C-A **
22915945-G-A 20754059-G-A **
22881510-A-G 20719624-A-G **
22843666-C-A 20681780-C-A **
22211715-C-A 20049829-C-A **
24052431-A-G 21906284-A-G P3_b1 **
22199590-A-G 20037704-A-G **
22063853-C-A 19901967-C-A **
21828566-G-A 19666680-G-A **
21790108-G-T 19628222-G-T **
21615978-C-T 19454092-C-T **
21560091-C-A 19398205-C-A **
21206826-C-A 19044940-C-A **
21154424-C-A 18992538-C-A **
21049344-T-C 18887458-T-C **
21047776-C-A 18885890-C-A **
20635100-A-T 18473214-A-T P4_Prx **
20635073-A-T 18473187-A-T P4_Prx **
23865934-C-A 21704048-C-A **
24220856-A-G 22074709-A-G P3_b1 **
19820143-T-G 17708263-T-G P5_Prx **
56870784-G-T **
26487987-A-T 24341840-A-T P1_Y1 **
21055702-A-C 18893816-A-C **
20711523-T-A 18549637-T-A P4_Prx **
20474465-A-AT 18312579-A-AT P5_Dst **
19871630-T-C 17759750-T-C P5_Prx **
14786587-T-C 12674657-T-C **
13338900-C-G 11183224-C-G **
10026995-ATATT-A 10189386-ATATT-A 5×TATT**
9636787-T-A 9799178-T-A IR3_Prx **
4300670-T-C 4432629-T-C **
13338888-C-T 11183212-C-T **
13338891-A-C 11183215-A-C **
56845353-G-A **
24363589-C-A 22217442-C-A **
56840769-G-T **
56828004-C-T **
28775437-A-G 26629290-A-G **
28748532-C-A 26602385-C-A **
28720205-T-A 26574058-T-A **
28632868-C-A 26486721-C-A **
28520708-C-T 26374561-C-T **
28505163-C-A 26359016-C-A **
27919417-C-A 25773270-C-A P1_Y2 **
25959330-G-C 23813183-G-C P1_Y1 **
24485784-A-T 22339637-A-T **
24449899-T-C 22303752-T-C **
20040498-C-A 17928618-C-A P5_Prx **
19733306-C-CG 17621426-C-CG P5_Prx **
15049489-G-A 12937580-G-A **
15670336-T-A 13558456-T-A **
16602916-C-A 14491036-C-A **
16514086-C-A 14402206-C-A **
16510205-C-A 14398325-C-A **
16488849-C-A 14376969-C-A **
16375954-CA-C 14264074-CA-C **
16375957-A-C 14264077-A-C **
16375954-C-T 14264074-C-T **
16070919-G-T 13959039-G-T **
16042744-C-A 13930864-C-A **
15973093-A-G 13861213-A-G **
15731103-C-A 13619223-C-A **
15664038-A-C 13552158-A-C **
16781390-C-A 14669510-C-A **
15573569-C-CACTGCA 13461689-C-CACTGCA **
15573569-C-T 13461689-C-T **
15573565-A-G 13461685-A-G **
15573559-C-G 13461679-C-G **
17115054-C-A 15003174-C-A **
15475001-C-A 13363121-C-A **
15320827-C-A 13208945-C-A **
15181749-A-C 13069835-A-C **
15151525-AG-T 13039612-AG-T **
15133447-T-C 13021534-T-C **
15103799-C-A 12991887-C-A **
15049492-G-A 12937583-G-A **
16612385-C-A 14500505-C-A **
16826488-C-A 14714608-C-A **
19600491-G-GGT 17488611-G-GGT P5_Prx **
17928186-C-A 15816306-C-A **
19490955-G-T 17379075-G-T **
19411173-G-T 17299293-G-T **
19268996-C-A 17157116-C-A **
19187681-C-G 17075801-C-G **
19053270-T-G 16941390-T-G **
18905329-C-A 16793449-C-A **
18873727-C-A 16761847-C-A **
18420352-C-A 16308472-C-A P6_Gap **
18366154-A-C 16254274-A-C P6_Prx **
18345958-A-C 16234078-A-C P6_Prx **
18343803-A-T 16231923-A-T P6_Prx **
18267567-C-A 16155687-C-A **
17750951-A-G 15639071-A-G **
16888993-T-G 14777113-T-G **
17691969-C-A 15580089-C-A **
17678998-C-A 15567118-C-A **
17548746-A-G 15436866-A-G **
17494599-G-A 15382719-G-A FT176285 **
17420406-C-A 15308526-C-A **
17375261-G-T 15263381-G-T **
17319808-G-T 15207928-G-T **
17222688-T-C 15110808-T-C **
17194960-C-A 15083080-C-A **
17178730-C-A 15066850-C-A **
17072701-C-A 14960821-C-A **
16905438-A-G 14793558-A-G **
4257485-C-A 4389444-C-A **
5601650-A-C 5733609-A-C **
5785812-C-A 5917771-C-A **
9117162-C-A 9279553-C-A **
2833359-A-AT 2965318-A-AT 9×T**
6664399-G-T 6796358-G-T **
10688077-T-C **
4769489-C-A 4901448-C-A YFS287299 **
10759853-T-C **
18738153-C-A 16626273-C-A **
21890918-C-T 19729032-C-T **
10992369-C-A **
9657404-CA-C 9819795-CA-C IR3_Prx 12×A**
10779281-CCCATT-C **
4449119-C-A 4581078-C-A **
7461781-G-T 7593740-G-T IR1_L **
10772115-C-A **
18346517-GTA-G 16234637-GTA-G P6_Prx **
14201846-CA-C 12081140-CA-C 8×A**
11033623-T-A **
10985309-C-A **
10877826-T-TGCATG **
28481066-C-A 26334919-C-A **
10932686-G-T **
17481286-C-A 15369406-C-A **
11672031-C-A **
28804413-G-A 26658266-G-A **
56845340-G-A **
10843793-C-A **
17274232-C-A 15162352-C-A **
10678645-T-A **
6911627-C-A 7043586-C-A **
11645777-C-A **
6976618-C-A 7108577-C-A **
7075954-C-A 7207913-C-A **
11027070-A-T **
10825659-T-A **
10825656-C-A **
19547739-C-A 17435859-C-A **
22045673-C-A 19883787-C-A **
13221956-C-A 11066280-C-A **
10672268-C-A **
13235380-C-A 11079704-C-A **
4376307-G-T 4508266-G-T **
6177555-C-A 6309514-C-A IR3_Dst **
14846833-A-G 12734899-A-G **
4223250-C-A 4355209-C-A **
22316380-C-A 20154494-C-A DYZ19 **
20603892-G-T 18442006-G-T P5_Dst **
10768690-T-C **
21623841-G-T 19461955-G-T **
10980885-C-A **
10782774-C-A **
10985283-C-T **
10985280-G-T **
10808045-C-A **
2783690-C-A 2915649-C-A **
11036174-C-A **
10678639-A-G **
16558571-C-A 14446691-C-A **
20995550-TC-T 18833664-TC-T P4_Dst **
2682819-C-A 2814778-C-A **
21555480-C-A 19393594-C-A **
21464513-C-A 19302627-C-A **
10927632-T-A **
8462064-CAAAAAAAAA-C 8594023-CAAAAAAAAA-C 26×A**
10781037-TATTCC-T **
15424795-G-T 13312915-G-T **
14595949-C-A 12484149-C-A **
10951261-ACCATT-A **
10753255-C-A **
10753197-T-A **
22675588-C-A 20513702-C-A **
11024682-T-C **
13338878-A-G 11183202-A-G **
19377256-GAGAA-G 17265376-GAGAA-G 4×AGAA**
24485755-A-T 22339608-A-T **
5534929-C-A 5666888-C-A **
27699957-C-CAT 25553810-C-CAT P1_Y2 8×AT**
21939618-G-A 19777732-G-A PF3817 **
18263906-C-A 16152026-C-A **
17128513-C-A 15016633-C-A **
21575598-T-A 19413712-T-A **
22309905-A-T 20148019-A-T DYZ19 **
20424844-G-A 18262958-G-A P5_Dst **
21691570-A-T 19529684-A-T M222M2626 S629 **
10778853-C-A **
11673216-C-A **
10678635-T-C **
5336697-T-A 5468656-T-A FT32145 12×A**
20603903-G-T 18442017-G-T P5_Dst **
18303264-A-G 16191384-A-G P6_Prx **
56756929-G-T **
56756928-G-A **
11006836-C-G **
5066032-TA-T 5197991-TA-T 10×A**
7299149-C-A 7431108-C-A **
26199709-G-T 24053562-G-T P1_Y1 **
11024685-C-A **
11024683-C-G **
10911675-G-A **
10801032-T-C **
22164546-TCA-T 20002660-TCA-T **
10801005-A-T **
18892141-C-A 16780261-C-A **
6867680-G-GTT 6999639-G-GTT 18×T**
5455223-C-A 5587182-C-A **
18346541-C-G 16234661-C-G P6_Prx **
15140755-C-A 13028842-C-A **
13213937-T-G 11058261-T-G **
10773839-C-A **
10859664-C-A **
10821957-C-A **
11024677-C-A **
15352861-C-CAA 13240980-C-CAA 17×A**
14658222-C-A 12546287-C-A **
10861273-G-T **
56839242-G-T **
28774065-C-A 26627918-C-A **
21911942-C-A 19750056-C-A **
10986196-G-T **
14859094-C-A 12747160-C-A **
20832294-C-A 18670408-C-A P4_Gap **
15503331-C-A 13391451-C-A **
22811137-C-A 20649251-C-A **
3706729-A-T 3838688-A-T **
10776716-C-A **
4867594-G-C 4999553-G-C **
23439054-A-T 21277168-A-T 10×T**
10839040-C-CGGAAG **
11027048-C-G **
10839054-C-G **
18793594-G-T 16681714-G-T **
10987406-TTCCAC-T **
16233446-C-A 14121566-C-A **
21615986-T-C 19454100-T-C **
16823952-T-TAA 14712072-T-TAA 17×A**
9574854-A-AG 9737245-A-AG IR3_Prx **
10667171-GTCCAC-G **
6085937-C-A 6217896-C-A **
14568343-C-A 12456543-C-A **
14241263-C-A 12120557-C-A **
21827863-C-A 19665977-C-A **
10780251-G-T **
14846874-G-T 12734940-G-T **
19558135-C-A 17446255-C-A **
4527381-C-A 4659340-C-A **
13643069-C-A 11487393-C-A **
14461414-C-A 12340687-C-A **
10818653-T-C **
10801036-ATTACC-A **
7619077-C-A 7751036-C-A **
19523409-C-A 17411529-C-A **
10801022-T-G **
10801045-T-A **
5084420-C-CT 5216379-C-CT 9×T**
3706761-C-A 3838720-C-A **
6264621-C-A 6396580-C-A IR3_Dst **
10922297-C-T **
9942042-TA-T 10104433-TA-T **
10870936-C-A **
15049481-C-G 12937572-C-G **
18904407-C-A 16792527-C-A **
11027064-C-CAA **
10944545-G-T **
28469276-C-A 26323129-C-A **
10899744-C-A **
14846868-T-G 12734934-T-G **
11007530-T-C **
6926226-C-A 7058185-C-A **
10801006-A-G **
18996446-C-A 16884566-C-A **
11007545-C-T **
14142475-C-A 12021769-C-A **
15532543-C-A 13420663-C-A **
56845335-TG-T **
11035157-C-A **
56845352-T-A **
13338856-G-A 11183180-G-A **
23167819-C-A 21005933-C-A **
10845610-T-G ***
21392269-T-A 19230383-T-A ***
8459392-ATTAT-A 8591351-ATTAT-A 6×TTAT***
26730271-A-G 24584124-A-G P1_g2 ***
15876360-CAA-C,CA 13764480-CAA-C,CA 21×A***
10667026-T-C ***
6849324-C-A 6981283-C-A ***
21147436-C-A 18985550-C-A ***
21066676-G-A 18904790-G-A ***
7330645-C-A 7462604-C-A ***
14540285-C-A 12428486-C-A ***
8314146-CTTTTTTTTT-C 8446105-CTTTTTTTTT-C 24×T***
5179541-T-C 5311500-T-C Z38491 8×AC***
7421884-TA-T 7553843-TA-T 10×A***
16267512-T-TA 14155632-T-TA 11×A***
19800016-GA-G 17688136-GA-G P5_Prx ***
17491653-C-A 15379773-C-A ***
10815090-A-G ***
10798341-C-A ***
19489502-G-A 17377622-G-A ***
9446086-G-T 9608477-G-T ***
22590259-A-G 20428373-A-G ***
22036984-C-A 19875098-C-A ***
23412318-T-C 21250432-T-C ***
26908718-C-A 24762571-C-A P1_r3 ***
2861968-C-A 2993927-C-A ***
28590624-C-A 26444477-C-A ***
24470669-A-G 22324522-A-G ***
18756798-GTT-G,GT 16644918-GTT-G,GT 19×T***
3363318-C-CT 3495277-C-CT 15×T***
13454333-G-C 11298657-G-C ***
2686603-T-TA,TAA 2818562-T-TA,TAA 16×A***
4251033-C-CT 4382992-C-CT 24×T***
4925653-G-A 5057612-G-A ***
23208221-C-A 21046335-C-A ***
10911740-A-C,G ***
13453201-G-A 11297525-G-A ***
5904031-CA-C 6035990-CA-C 27×A***
13488759-C-T 11333083-C-T ***
13488839-CGGT-C,CAGG 11333163-CGGT-C,CAGG ***
13454290-T-A 11298614-T-A ***
13529621-GCAC-G 11373945-GCAC-G ***
6586786-CTTT-C 6718745-CTTT-C 22×T***
5865208-C-A 5997167-C-A ***
13950947-CTTT-C 11830241-CTTT-C 23×T***
22842884-A-G 20680998-A-G ***
11004966-C-A ***
6778946-C-A 6910905-C-A ***
19509410-C-A 17397530-C-A ***
17130400-CTTT-C 15018520-CTTT-C 21×T***
13478101-C-G 11322425-C-G ***
7139608-ATTT-A 7271567-ATTT-A 17×T***
15770619-G-T 13658739-G-T ***
6930407-C-A 7062366-C-A ***
19130379-C-A 17018499-C-A ***
15053064-C-A 12941155-C-A ***
10889910-C-A ***
14403083-G-GT 12282380-G-GT 8×T***
14462392-C-A 12341665-C-A ***
10814741-C-T ***
13454317-CATTCT-C 11298641-CATTCT-C ***
10794414-C-A ***
10773284-C-A ***
10760676-C-T ***
10677416-C-A ***
14060785-A-G 11940079-A-G ***
56826383-G-C,T ***
14357635-C-A 12236930-C-A ***
15215650-C-A 13103736-C-A ***
15317964-C-A 13206070-C-A ***
10668312-T-C ***
15434275-C-A 13322395-C-A ***
15448217-T-TAAA 13336337-T-TAAA 12×A***
23997524-C-A 21851377-C-A ***
15230842-CT-C,CTT 13118928-CT-C,CTT 13×T***
16959453-C-CAA 14847573-C-CAA 13×A***
28461722-CTTT-C 26315575-CTTT-C 19×T***
22792927-C-A 20631041-C-A ***
11005013-C-A ***
17128701-C-A 15016821-C-A ***
11003830-A-G ***
10673421-C-A ***
6019744-AT-A 6151703-AT-A 11×T***
10875741-C-A ***
8025155-CAA-C,CA 8157114-CAA-C,CA 14×A***
10764995-C-A ***
16345194-C-A 14233314-C-A ***
10911697-A-G,T ***
10962947-C-T ***
13488747-A-G,T 11333071-A-G,T ***
13677143-C-A 11521467-C-A ***
10979790-C-A ***
11665014-G-A ***
15174670-C-A 13062756-C-A ***
10921118-CTCCATTCCATTCCAT-C ******
13922352-G-A 11801646-G-A ***
15505127-C-A 13393247-C-A ***
15543950-C-A 13432070-C-A ***
19060670-C-A 16948790-C-A ***
56835530-A-C,G ***
17052564-C-A 14940684-C-A BY203568 ***
10808555-C-A ***
9991637-CTTTT-C 10154028-CTTTT-C 20×T***
8428932-C-T 8560891-C-T ***
10668327-C-A ***
56834615-CTCCATTCCATTCCATTTCAC-C,CTCCAT ***
17459536-T-C 15347656-T-C ***
11005491-G-A,T ***
8270156-G-T 8402115-G-T ***
16952382-C-A 14840502-C-A ***
13453214-CA-T 11297538-CA-T ***
8019827-A-G 8151786-A-G ***
7866231-C-A 7998190-C-A ***
9023106-G-T 9185497-G-T ***
18685210-C-A 16573330-C-A ***
13466471-T-C 11310795-T-C F18172 ***
10951241-C-T ***
56827361-C-A ***
17020394-C-A 14908514-C-A ***
16940921-C-A 14829041-C-A ***
9961366-G-T 10123757-G-T ***
15106356-TA-T 12994444-TA-T 10×A***
18871925-C-A 16760045-C-A ***
18165126-CAAAA-C 16053246-CAAAA-C 13×A***
15661777-C-A 13549897-C-A ***
9513618-C-A 9676009-C-A ***
15969961-A-T 13858081-A-T ***
10776988-TATTCC-T ***
16264509-T-C 14152629-T-C ***
16275927-T-C 14164047-T-C ***
10825242-T-A ***
16907297-C-A 14795417-C-A ***
9069909-G-T 9232300-G-T ***
10803118-C-A ***
8765613-A-G 8897572-A-G ***
20723277-CTTT-C 18561391-CTTT-C P4_Prx 15×T***
16834343-C-A 14722463-C-A ***
16836043-C-A 14724163-C-A ***
8649830-G-T 8781789-G-T ***
15468678-C-CA 13356798-C-CA 23×A***
13454293-A-T 11298617-A-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 374065869674571092097052032
Kit: 3740651453830791548288179716
Used in age calculations1453830791548288179716
Counts of SNPs74
Variant counts last updated 2019-11-29 04:19:16.



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