Stewart
BigY2: 292186MDKA Birth:

Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 292186 |
---|---|---|---|---|---|---|---|---|
13686980-C-A | 11531304-C-A | A* | ||||||
22335304-G-A | 20173418-G-A | DYZ19 | A* | |||||
7839735-C-T | 7971694-C-T | Y4956 Y4990 FGC4009 | Y | Y | + | |||
14752-GGGG-TCAT | + | |||||||
23964826-G-A | 21818679-G-A | Y | + | |||||
18008636-A-G | 15896756-A-G | P7_Dst | ** | |||||
13474604-T-C | 11318928-T-C | Z19846 | ** | |||||
4138256-T-C | 4270215-T-C | FT319643 | ** | |||||
4245201-C-A | 4377160-C-A | Z23207 | ** | |||||
21806992-A-G | 19645106-A-G | ** | ||||||
2905886-G-T | 3037845-G-T | ** | ||||||
13253628-C-A | 11097952-C-A | ** | ||||||
13907688-C-A | 11786982-C-A | ** | ||||||
13484784-C-A | 11329108-C-A | ** | ||||||
13225631-C-A | 11069955-C-A | FT441264 | ** | |||||
4129094-C-A | 4261053-C-A | ** | ||||||
20612111-G-T | 18450225-G-T | P4_Prx | ** | |||||
6492632-C-A | 6624591-C-A | ** | ||||||
3859568-G-T | 3991527-G-T | ** | ||||||
19848203-G-T | 17736323-G-T | P5_Prx | ** | |||||
15468314-T-C | 13356434-T-C | ** | ||||||
10797683-ACTCCT-A | ** | |||||||
5905344-C-A | 6037303-C-A | ** | ||||||
10967573-C-A | ** | |||||||
26400242-G-T | 24254095-G-T | P1_Y1 | ** | |||||
21148588-TCAA-T | 18986702-TCAA-T | ** | ||||||
16904662-T-C | 14792782-T-C | ** | ||||||
6755950-C-A | 6887909-C-A | ** | ||||||
13394828-A-G | 11239152-A-G | ** | ||||||
14423865-C-A | 12303140-C-A | ** | ||||||
15380060-G-T | 13268180-G-T | ** | ||||||
25995118-G-T | 23848971-G-T | P1_Y1 | ** | |||||
23802079-T-A | 21640193-T-A | ** | ||||||
23807573-CGT-C | 21645687-CGT-C | ** | ||||||
6634276-C-T | 6766235-C-T | ** | ||||||
6911548-C-A | 7043507-C-A | ** | ||||||
10752413-C-T | ** | |||||||
21133555-TCAA-T | 18971669-TCAA-T | ** | ||||||
18687531-G-C | 16575651-G-C | ** | ||||||
14216294-C-A | 12095588-C-A | ** | ||||||
10979526-C-T | ** | |||||||
24634104-C-T | 22487957-C-T | P3_t2 | ** | |||||
20579235-C-A | 18417349-C-A | P5_Dst | ** | |||||
2960375-A-C | 3092334-A-C | ** | ||||||
20612189-G-T | 18450303-G-T | P4_Prx | ** | |||||
18780381-C-A | 16668501-C-A | ** | ||||||
7504753-C-G | 7636712-C-G | IR1_L | ** | |||||
17490198-C-A | 15378318-C-A | ** | ||||||
13324663-C-A | 11168987-C-A | ** | ||||||
10900871-C-A | ** | |||||||
15333510-G-T | 13221628-G-T | ** | ||||||
13445973-C-A | 11290297-C-A | ** | ||||||
13411333-C-A | 11255657-C-A | ** | ||||||
10676983-C-A | ** | |||||||
2960407-C-A | 3092366-C-A | ** | ||||||
10682874-C-A | ** | |||||||
22535971-C-A | 20374085-C-A | ** | ||||||
56850252-C-A | ** | |||||||
7033408-C-A | 7165367-C-A | ** | ||||||
13958971-C-A | 11838265-C-A | ** | ||||||
16019117-G-T | 13907237-G-T | ** | ||||||
21189667-TCAA-T | 19027781-TCAA-T | ** | ||||||
7270334-A-G | 7402293-A-G | ** | ||||||
18271038-A-G | 16159158-A-G | ** | ||||||
56771174-G-T | ** | |||||||
26435367-A-C | 24289220-A-C | P1_Y1 | ** | |||||
13946087-C-A | 11825381-C-A | ** | ||||||
14118235-A-G | 11997529-A-G | ** | ||||||
28763857-C-A | 26617710-C-A | ** | ||||||
8371546-G-T | 8503505-G-T | ** | ||||||
14023062-C-A | 11902356-C-A | ** | ||||||
21459752-C-A | 19297866-C-A | ** | ||||||
14214909-C-A | 12094203-C-A | Y90664 | ** | |||||
24363959-G-T | 22217812-G-T | ** | ||||||
18155614-C-A | 16043734-C-A | ** | ||||||
9859174-C-A | 10021565-C-A | ** | ||||||
5873658-C-A | 6005617-C-A | ** | ||||||
56771162-T-A | ** | |||||||
28798728-C-A | 26652581-C-A | ** | ||||||
4902164-C-A | 5034123-C-A | ** | ||||||
10878581-T-G | ** | |||||||
10770337-A-G | ** | |||||||
8815876-C-A | 8947835-C-A | ** | ||||||
5471969-G-A | 5603928-G-A | ** | ||||||
11029734-A-G | ** | |||||||
11029740-T-A | ** | |||||||
11029769-A-T | ** | |||||||
11029771-C-T | ** | |||||||
23802067-A-G | 21640181-A-G | ** | ||||||
13226968-C-A | 11071292-C-A | ** | ||||||
16945524-A-T | 14833644-A-T | ** | ||||||
14142025-C-A | 12021319-C-A | ** | ||||||
14300096-T-A | 12179390-T-A | ** | ||||||
19293763-T-A | 17181883-T-A | ** | ||||||
27883632-C-A | 25737485-C-A | P1_Y2 | ** | |||||
15650622-C-A | 13538742-C-A | ** | ||||||
15333896-A-G | 13222014-A-G | ** | ||||||
16562808-T-G | 14450928-T-G | ** | ||||||
7216575-C-A | 7348534-C-A | ** | ||||||
14274132-C-A | 12153426-C-A | ** | ||||||
15565938-C-A | 13454058-C-A | ** | ||||||
16006043-C-A | 13894163-C-A | ** | ||||||
10999834-T-C | ** | |||||||
28500236-C-A | 26354089-C-A | ** | ||||||
7078448-C-A | 7210407-C-A | ** | ||||||
10987670-A-C | ** | |||||||
14510043-C-A | 12398248-C-A | ** | ||||||
7896843-C-A | 8028802-C-A | ** | ||||||
7014687-CAGAG-C | 7146646-CAGAG-C | ** | ||||||
21677092-G-A | 19515206-G-A | ** | ||||||
27963481-A-AC | 25817334-A-AC | P1_Y2 | ** | |||||
17152905-C-A | 15041025-C-A | ** | ||||||
16575-C-A | ** | |||||||
13255577-A-G | 11099901-A-G | ** | ||||||
13896163-C-A | 11775457-C-A | ** | ||||||
5073779-C-A | 5205738-C-A | ** | ||||||
24922371-CA-C | 22776224-CA-C | g1 | 9×A | ** | ||||
19000050-C-A | 16888170-C-A | ** | ||||||
7371876-C-A | 7503835-C-A | ** | ||||||
26366418-G-T | 24220271-G-T | P1_Y1 | ** | |||||
16558525-C-T | 14446645-C-T | ** | ||||||
7082900-C-A | 7214859-C-A | ** | ||||||
20579284-T-C | 18417398-T-C | P5_Dst | ** | |||||
13252602-C-T | 11096926-C-T | ** | ||||||
13252604-G-T | 11096928-G-T | ** | ||||||
5220479-C-A | 5352438-C-A | ** | ||||||
8279806-C-A | 8411765-C-A | ** | ||||||
21737770-C-A | 19575884-C-A | ** | ||||||
6712502-G-T | 6844461-G-T | ** | ||||||
10995713-C-A | ** | |||||||
18959248-T-C | 16847368-T-C | ** | ||||||
17177157-C-A | 15065277-C-A | ** | ||||||
7417546-C-T | 7549505-C-T | ** | ||||||
10793821-G-A | FT431462 | ** | ||||||
15912090-G-T | 13800210-G-T | ** | ||||||
21177014-C-A | 19015128-C-A | ** | ||||||
15452367-C-A | 13340487-C-A | ** | ||||||
14727273-C-A | 12615341-C-A | ** | ||||||
10645985-G-T | ** | |||||||
6241001-A-C | 6372960-A-C | IR3_Dst | ** | |||||
17752012-C-A | 15640132-C-A | ** | ||||||
22176117-C-A | 20014231-C-A | ** | ||||||
10627945-A-T | ** | |||||||
11029685-C-T | ** | |||||||
11029693-C-T | ** | |||||||
11029720-T-TTCGTGTCCAC | ** | |||||||
10688044-C-G | ** | |||||||
10979530-T-C | ** | |||||||
3854148-C-A | 3986107-C-A | ** | ||||||
10859550-C-A | ** | |||||||
21488749-C-A | 19326863-C-A | ** | ||||||
7164565-C-A | 7296524-C-A | ** | ||||||
14933539-C-T | 12821604-C-T | ** | ||||||
14313578-C-A | 12192872-C-A | ** | ||||||
7615298-C-A | 7747257-C-A | ** | ||||||
2960385-C-A | 3092344-C-A | ** | ||||||
7033477-C-A | 7165436-C-A | ** | ||||||
15402824-G-A | 13290944-G-A | ** | ||||||
11005185-C-A | FT393373 | ** | ||||||
56843519-C-A | ** | |||||||
28547460-C-A | 26401313-C-A | ** | ||||||
17546175-C-A | 15434295-C-A | ** | ||||||
21073373-C-A | 18911487-C-A | ** | ||||||
16598959-T-G | 14487079-T-G | ** | ||||||
28707539-C-T | 26561392-C-T | ** | ||||||
3047454-C-A | 3179413-C-A | ** | ||||||
21874949-A-C | 19713063-A-C | ** | ||||||
7185460-C-A | 7317419-C-A | ** | ||||||
10999838-T-G | ** | |||||||
23802075-T-C | 21640189-T-C | ** | ||||||
25983815-A-AT | 23837668-A-AT | P1_Y1 | ** | |||||
13944647-C-A | 11823941-C-A | ** | ||||||
10919283-G-T | ** | |||||||
21211750-G-C | 19049864-G-C | ** | ||||||
10998075-TTTCCA-T | ** | |||||||
19537947-G-C | 17426067-G-C | ** | ||||||
7237874-A-G | 7369833-A-G | ** | ||||||
7269774-C-A | 7401733-C-A | ** | ||||||
5524772-C-A | 5656731-C-A | ** | ||||||
14972-C-T | ** | |||||||
19464205-G-T | 17352325-G-T | ** | ||||||
14558528-C-A | 12446729-C-A | ** | ||||||
17923542-C-A | 15811662-C-A | ** | ||||||
4756667-C-A | 4888626-C-A | ** | ||||||
23364266-A-G | 21202380-A-G | ** | ||||||
15971314-C-A | 13859434-C-A | ** | ||||||
23007697-G-T | 20845811-G-T | ** | ||||||
24611457-TGTG-T | 22465310-TGTG-T | P3_t2 | ** | |||||
10657791-G-T | ** | |||||||
23954207-C-A | 21808060-C-A | ** | ||||||
14142029-A-G | 12021323-A-G | ** | ||||||
15619140-C-A | 13507260-C-A | ** | ||||||
4585439-C-A | 4717398-C-A | ** | ||||||
17703232-C-A | 15591352-C-A | ** | ||||||
59008625-G-A | 56862478-G-A | ** | ||||||
3131820-G-T | 3263779-G-T | ** | ||||||
6634168-C-A | 6766127-C-A | ** | ||||||
15468347-C-A | 13356467-C-A | ** | ||||||
18687532-A-T | 16575652-A-T | ** | ||||||
10688057-T-A | ** | |||||||
27966905-C-T | 25820758-C-T | P1_Y2 | ** | |||||
20614932-C-A | 18453046-C-A | P4_Prx | ** | |||||
7131859-C-A | 7263818-C-A | ** | ||||||
10770275-G-C | ** | |||||||
11006905-C-A | ** | |||||||
56838583-C-A | ** | |||||||
16351572-C-A | 14239692-C-A | ** | ||||||
13510049-C-A | 11354373-C-A | ** | ||||||
19183928-A-T | 17072048-A-T | ** | ||||||
13227166-C-T | 11071490-C-T | ** | ||||||
20697866-T-G | 18535980-T-G | P4_Prx | ** | |||||
2788357-A-G | 2920316-A-G | ** | ||||||
2845135-T-A | 2977094-T-A | ** | ||||||
2905887-C-G | 3037846-C-G | ** | ||||||
2905894-A-C | 3037853-A-C | ** | ||||||
3051985-A-T | 3183944-A-T | ** | ||||||
3079545-G-A | 3211504-G-A | ** | ||||||
3110214-G-T | 3242173-G-T | ** | ||||||
3130894-T-A | 3262853-T-A | ** | ||||||
3268217-T-C | 3400176-T-C | ** | ||||||
3275691-A-T | 3407650-A-T | ** | ||||||
3339376-T-C | 3471335-T-C | ** | ||||||
3339452-C-G | 3471411-C-G | ** | ||||||
3389049-T-G | 3521008-T-G | 10×A | ** | |||||
3407917-C-A | 3539876-C-A | ** | ||||||
3558589-G-T | 3690548-G-T | ** | ||||||
3559870-A-G | 3691829-A-G | ** | ||||||
3610382-T-A | 3742341-T-A | ** | ||||||
3670882-G-T | 3802841-G-T | ** | ||||||
3670912-G-T | 3802871-G-T | ** | ||||||
3771802-C-A | 3903761-C-A | ** | ||||||
3787822-T-C | 3919781-T-C | ** | ||||||
3788009-C-T | 3919968-C-T | ** | ||||||
3788017-G-T | 3919976-G-T | ** | ||||||
3832011-T-A | 3963970-T-A | ** | ||||||
3833618-C-G | 3965577-C-G | ** | ||||||
3857372-T-A | 3989331-T-A | ** | ||||||
3859574-G-T | 3991533-G-T | ** | ||||||
4081564-C-A | 4213523-C-A | ** | ||||||
4134202-C-G | 4266161-C-G | ** | ||||||
4229069-C-A | 4361028-C-A | ** | ||||||
4284837-G-T | 4416796-G-T | ** | ||||||
4392227-T-A | 4524186-T-A | ** | ||||||
4392259-A-G | 4524218-A-G | ** | ||||||
4540999-C-A | 4672958-C-A | ** | ||||||
4568407-G-C | 4700366-G-C | ** | ||||||
4709328-C-A | 4841287-C-A | ** | ||||||
4718435-C-A | 4850394-C-A | ** | ||||||
4718529-C-A | 4850488-C-A | ** | ||||||
4798783-T-G | 4930742-T-G | ** | ||||||
4871880-T-G | 5003839-T-G | ** | ||||||
4898573-C-A | 5030532-C-A | ** | ||||||
4902187-A-C | 5034146-A-C | ** | ||||||
4976078-C-G | 5108037-C-G | ** | ||||||
5021989-G-T | 5153948-G-T | ** | ||||||
5118368-T-C | 5250327-T-C | ** | ||||||
5154419-G-T | 5286378-G-T | ** | ||||||
5185453-CCCAAA-C | 5317412-CCCAAA-C | ** | ||||||
5249918-A-C | 5381877-A-C | ** | ||||||
5371880-G-T | 5503839-G-T | ** | ||||||
5371930-C-T | 5503889-C-T | ** | ||||||
5392984-GCCATATTTTCTTTAT-G | 5524943-GCCATATTTTCTTTAT-G | ** | ||||||
5420597-C-A | 5552556-C-A | ** | ||||||
5421429-C-A | 5553388-C-A | ** | ||||||
5428954-C-A | 5560913-C-A | ** | ||||||
5454537-C-A | 5586496-C-A | ** | ||||||
5454597-A-C | 5586556-A-C | ** | ||||||
5467570-G-T | 5599529-G-T | ** | ||||||
5562965-A-G | 5694924-A-G | ** | ||||||
5645146-C-A | 5777105-C-A | ** | ||||||
5742703-C-A | 5874662-C-A | ** | ||||||
5851190-A-C | 5983149-A-C | ** | ||||||
5919330-CT-C | 6051289-CT-C | 10×T | ** | |||||
5973750-G-A | 6105709-G-A | ** | ||||||
5973771-C-A | 6105730-C-A | ** | ||||||
5979630-G-T | 6111589-G-T | ** | ||||||
5990363-G-T | 6122322-G-T | ** | ||||||
6177475-ATTCGTT-A | 6309434-ATTCGTT-A | IR3_Dst | ** | |||||
6375708-T-C | 6507667-T-C | ** | ||||||
6380776-C-T | 6512735-C-T | ** | ||||||
6380784-T-C | 6512743-T-C | ** | ||||||
6453910-T-G | 6585869-T-G | ** | ||||||
6458559-C-A | 6590518-C-A | ** | ||||||
6505669-A-T | 6637628-A-T | ** | ||||||
6519416-A-G | 6651375-A-G | ** | ||||||
6519451-C-G | 6651410-C-G | ** | ||||||
6535199-A-C | 6667158-A-C | ** | ||||||
6605291-C-A | 6737250-C-A | ** | ||||||
6634208-C-A | 6766167-C-A | ** | ||||||
6694832-T-A | 6826791-T-A | ** | ||||||
6729642-C-A | 6861601-C-A | ** | ||||||
6925160-G-T | 7057119-G-T | ** | ||||||
6934707-A-T | 7066666-A-T | ** | ||||||
6934732-C-A | 7066691-C-A | ** | ||||||
6942700-T-G | 7074659-T-G | ** | ||||||
7011444-C-A | 7143403-C-A | ** | ||||||
7090680-A-G | 7222639-A-G | ** | ||||||
7098026-C-A | 7229985-C-A | ** | ||||||
7135383-T-C | 7267342-T-C | ** | ||||||
7166845-C-A | 7298804-C-A | ** | ||||||
7195224-T-C | 7327183-T-C | ** | ||||||
7201538-C-G | 7333497-C-G | ** | ||||||
7211297-A-G | 7343256-A-G | ** | ||||||
7211317-A-G | 7343276-A-G | ** | ||||||
7229008-C-A | 7360967-C-A | ** | ||||||
7231257-T-A | 7363216-T-A | ** | ||||||
7235868-G-T | 7367827-G-T | ** | ||||||
7240439-G-T | 7372398-G-T | ** | ||||||
7241969-G-T | 7373928-G-T | ** | ||||||
7269780-G-A | 7401739-G-A | ** | ||||||
7294464-A-G | 7426423-A-G | ** | ||||||
7302390-G-A | 7434349-G-A | ** | ||||||
7310553-C-G | 7442512-C-G | ** | ||||||
7332940-C-A | 7464899-C-A | ** | ||||||
7334034-A-G | 7465993-A-G | ** | ||||||
7359668-A-G | 7491627-A-G | ** | ||||||
7395219-G-T | 7527178-G-T | ** | ||||||
7418524-G-T | 7550483-G-T | ** | ||||||
7418607-T-G | 7550566-T-G | ** | ||||||
7574021-C-G | 7705980-C-G | ** | ||||||
7574057-T-C | 7706016-T-C | ** | ||||||
7650267-A-C | 7782226-A-C | ** | ||||||
7699408-T-C | 7831367-T-C | ** | ||||||
7710743-C-T | 7842702-C-T | ** | ||||||
7820965-A-T | 7952924-A-T | ** | ||||||
7866532-C-A | 7998491-C-A | ** | ||||||
8110528-C-A | 8242487-C-A | ** | ||||||
8325606-C-A | 8457565-C-A | ** | ||||||
8370558-G-T | 8502517-G-T | ** | ||||||
8699741-A-G | 8831700-A-G | ** | ||||||
8807507-T-C | 8939466-T-C | ** | ||||||
9110225-A-T | ** | |||||||
9030159-C-T | 9192550-C-T | ** | ||||||
9047018-T-A | 9209409-T-A | ** | ||||||
9075916-G-C | 9238307-G-C | ** | ||||||
9076448-G-T | 9238839-G-T | ** | ||||||
9088899-C-T | 9251290-C-T | ** | ||||||
9089125-C-A | 9251516-C-A | ** | ||||||
9220243-C-A | 9382634-C-A | ** | ||||||
9438119-T-A | 9600510-T-A | ** | ||||||
9509914-TCTTTGCTATTAATAAG-T | 9672305-TCTTTGCTATTAATAAG-T | ** | ||||||
9678328-T-G | 9840719-T-G | IR3_Prx | ** | |||||
9891160-A-T | 10053551-A-T | ** | ||||||
9925199-A-T | 10087590-A-T | ** | ||||||
9955597-C-A | 10117988-C-A | ** | ||||||
9963268-T-C | 10125659-T-C | ** | ||||||
9983262-A-T | 10145653-A-T | ** | ||||||
10011116-G-T | 10173507-G-T | ** | ||||||
10034151-T-G | 10196542-T-G | ** | ||||||
10056718-C-A | 10219109-C-A | ** | ||||||
10646013-A-C | ** | |||||||
10654215-C-A | ** | |||||||
10657804-T-C | ** | |||||||
10661940-A-C | ** | |||||||
10669512-TCCATTC-T | ** | |||||||
10671540-A-AC | ** | |||||||
10676626-CT-C | ** | |||||||
10678282-G-A | ** | |||||||
10684657-C-A | ** | |||||||
10688046-ACTC-A | ** | |||||||
10688052-TTC-T | ** | |||||||
10693421-C-A | ** | |||||||
10744868-C-A | ** | |||||||
10749423-G-T | FT91613 | ** | ||||||
10758992-A-T | ** | |||||||
10761181-T-G | ** | |||||||
10762771-C-G | ** | |||||||
10770352-A-C | ** | |||||||
10773094-T-C | ** | |||||||
10774617-C-A | ** | |||||||
10797717-CA-C | ** | |||||||
10797722-C-GT | ** | |||||||
10798566-C-A | ** | |||||||
10802736-A-C | ** | |||||||
10802786-C-A | ** | |||||||
10804716-G-T | ** | |||||||
10808483-C-A | ** | |||||||
10828092-C-A | ** | |||||||
10834924-T-C | ** | |||||||
10835971-G-T | ** | |||||||
10837135-C-A | ** | |||||||
10838485-G-T | ** | |||||||
10839459-T-C | ** | |||||||
10842697-T-G | ** | |||||||
10856716-C-A | ** | |||||||
10858377-C-A | ** | |||||||
10861542-C-A | ** | |||||||
10862268-T-C | ** | |||||||
10862273-T-G | ** | |||||||
10863037-C-A | ** | |||||||
10868727-T-C | ** | |||||||
10868756-T-C | ** | |||||||
10870468-G-C | ** | |||||||
10882033-T-TAAACC | ** | |||||||
10894911-A-C | ** | |||||||
10924895-T-C | ** | |||||||
10933171-T-C | ** | |||||||
10933206-A-G | ** | |||||||
10936134-C-G | ** | |||||||
10942653-A-C | ** | |||||||
10942658-A-C | ** | |||||||
10970634-T-G | ** | |||||||
10979293-G-T | ** | |||||||
10981345-C-A | ** | |||||||
10985315-A-C | ** | |||||||
10990402-A-C | ** | |||||||
10990409-T-C | FT87704 | ** | ||||||
10997361-G-C | ** | |||||||
11000368-C-A | ** | |||||||
11013932-C-CATCTA | ** | |||||||
11022358-C-A | ** | |||||||
11027275-C-A | ** | |||||||
11030491-C-A | ** | |||||||
11031994-C-A | ** | |||||||
11032769-C-A | ** | |||||||
11033005-C-A | ** | |||||||
13212544-A-G | 11056868-A-G | ** | ||||||
13213953-G-A | 11058277-G-A | ** | ||||||
13227213-T-C | 11071537-T-C | ** | ||||||
13253548-T-G | 11097872-T-G | ** | ||||||
13264363-G-C | 11108687-G-C | ** | ||||||
13278405-C-A | 11122729-C-A | ** | ||||||
13314999-C-A | 11159323-C-A | ** | ||||||
13322789-G-T | 11167113-G-T | ** | ||||||
13329176-G-T | 11173500-G-T | ** | ||||||
13445363-A-AG | 11289687-A-AG | ** | ||||||
13445916-A-T | 11290240-A-T | ** | ||||||
13461643-G-T | 11305967-G-T | ** | ||||||
13474607-CACA-C | 11318931-CACA-C | ** | ||||||
13474628-T-A | 11318952-T-A | ** | ||||||
13474630-T-G | 11318954-T-G | ** | ||||||
13474635-C-CA | 11318959-C-CA | ** | ||||||
13474639-AG-A | 11318963-AG-A | ** | ||||||
13553156-T-G | 11397480-T-G | ** | ||||||
13566924-T-G | 11411248-T-G | ** | ||||||
13601844-G-T | 11446168-G-T | ** | ||||||
13623527-G-A | 11467851-G-A | ** | ||||||
11656684-G-A | ** | |||||||
11672904-G-T | ** | |||||||
13896142-C-A | 11775436-C-A | FT388616 | ** | |||||
13901735-G-A | 11781029-G-A | ** | ||||||
13901789-G-T | 11781083-G-T | ** | ||||||
13909321-AAT-G | 11788615-AAT-G | ** | ||||||
13909886-C-A | 11789180-C-A | ** | ||||||
13913659-G-A | 11792953-G-A | ** | ||||||
13913767-C-CA | 11793061-C-CA | 8×A | ** | |||||
13933016-C-A | 11812310-C-A | ** | ||||||
13935935-A-C | 11815229-A-C | ** | ||||||
13953271-C-A | 11832565-C-A | ** | ||||||
13998073-T-TG | 11877367-T-TG | ** | ||||||
14012149-C-A | 11891443-C-A | ** | ||||||
14142007-T-G | 12021301-T-G | ** | ||||||
14220950-T-A | 12100244-T-A | ** | ||||||
14284138-T-C | 12163432-T-C | ** | ||||||
14300682-T-G | 12179976-T-G | ** | ||||||
14363488-G-T | 12242783-G-T | ** | ||||||
14376640-C-A | 12255936-C-A | ** | ||||||
14457567-T-A | 12336840-T-A | ** | ||||||
14510045-A-G | 12398250-A-G | ** | ||||||
14513112-T-G | 12401317-T-G | ** | ||||||
14514756-G-T | 12402961-G-T | ** | ||||||
14517331-T-G | 12405532-T-G | ** | ||||||
14526075-A-G | 12414276-A-G | ** | ||||||
14526102-G-T | 12414303-G-T | ** | ||||||
14531491-G-C | 12419692-G-C | ** | ||||||
14538046-T-G | 12426247-T-G | ** | ||||||
14605414-C-A | 12493616-C-A | ** | ||||||
14620731-A-C | 12508929-A-C | ** | ||||||
14622808-T-C | 12511006-T-C | ** | ||||||
14742435-A-T | 12630503-A-T | ** | ||||||
14795039-C-A | 12683110-C-A | ** | ||||||
14926442-G-A | 12814507-G-A | ** | ||||||
14926457-CGT-C | 12814522-CGT-C | ** | ||||||
14977285-C-G | 12865360-C-G | 10×T | ** | |||||
15044996-T-C | 12933086-T-C | ** | ||||||
15070431-A-G | 12958522-A-G | ** | ||||||
15073353-A-G | 12961443-A-G | ** | ||||||
15107563-C-A | 12995650-C-A | ** | ||||||
15126242-C-A | 13014329-C-A | ** | ||||||
15168099-C-A | 13056185-C-A | ** | ||||||
15280714-G-T | 13168813-G-T | ** | ||||||
15299268-C-T | 13187367-C-T | ** | ||||||
15347000-C-A | 13235119-C-A | ** | ||||||
15378638-C-A | 13266758-C-A | ** | ||||||
15412358-C-A | 13300478-C-A | ** | ||||||
15423826-C-A | 13311946-C-A | ** | ||||||
15451494-G-A | 13339614-G-A | ** | ||||||
15530148-C-A | 13418268-C-A | ** | ||||||
15565935-C-G | 13454055-C-G | ** | ||||||
15574963-T-G | 13463083-T-G | ** | ||||||
15632094-C-A | 13520214-C-A | ** | ||||||
15743121-T-C | 13631241-T-C | ** | ||||||
15769523-C-A | 13657643-C-A | ** | ||||||
15773635-G-T | 13661755-G-T | ** | ||||||
15866004-G-A | 13754124-G-A | ** | ||||||
16058884-T-C | 13947004-T-C | ** | ||||||
16065220-G-T | 13953340-G-T | ** | ||||||
16319299-G-A | 14207419-G-A | ** | ||||||
16336282-T-C | 14224402-T-C | ** | ||||||
16421208-C-A | 14309328-C-A | ** | ||||||
16430589-C-A | 14318709-C-A | ** | ||||||
16465918-T-C | 14354038-T-C | ** | ||||||
16490836-T-G | 14378956-T-G | ** | ||||||
16558531-G-T | 14446651-G-T | ** | ||||||
16562823-G-A | 14450943-G-A | ** | ||||||
16618776-C-A | 14506896-C-A | ** | ||||||
16625736-T-A | 14513856-T-A | ** | ||||||
16668105-C-A | 14556225-C-A | ** | ||||||
16687436-G-T | 14575556-G-T | ** | ||||||
16701423-C-T | 14589543-C-T | ** | ||||||
16721006-A-C | 14609126-A-C | ** | ||||||
16738124-T-C | 14626244-T-C | ** | ||||||
16886765-C-A | 14774885-C-A | ** | ||||||
16904646-G-T | 14792766-G-T | ** | ||||||
17013901-G-C | 14902021-G-C | ** | ||||||
17029039-G-T | 14917159-G-T | ** | ||||||
17064840-A-G | 14952960-A-G | ** | ||||||
17130494-C-G | 15018614-C-G | ** | ||||||
17153496-A-T | 15041616-A-T | ** | ||||||
17153536-T-C | 15041656-T-C | ** | ||||||
17153637-T-C | 15041757-T-C | ** | ||||||
17158563-C-A | 15046683-C-A | ** | ||||||
17193097-T-C | 15081217-T-C | ** | ||||||
17196446-G-T | 15084566-G-T | ** | ||||||
17222721-C-A | 15110841-C-A | ** | ||||||
17297239-T-C | 15185359-T-C | ** | ||||||
17380689-C-A | 15268809-C-A | ** | ||||||
17403788-A-G | 15291908-A-G | FT79560 | ** | |||||
17527381-T-G | 15415501-T-G | ** | ||||||
17544793-C-A | 15432913-C-A | ** | ||||||
17643887-T-G | 15532007-T-G | ** | ||||||
17643889-T-G | 15532009-T-G | ** | ||||||
17667046-C-G | 15555166-C-G | ** | ||||||
17701498-G-A | 15589618-G-A | ** | ||||||
17724237-A-T | 15612357-A-T | ** | ||||||
17823864-C-A | 15711984-C-A | ** | ||||||
17848951-C-T | 15737071-C-T | ** | ||||||
18187485-C-A | 16075605-C-A | ** | ||||||
18190378-C-A | 16078498-C-A | ** | ||||||
18232010-A-G | 16120130-A-G | ** | ||||||
18271040-G-C | 16159160-G-C | ** | ||||||
18271052-G-C | 16159172-G-C | ** | ||||||
18271055-C-T | 16159175-C-T | ** | ||||||
18340601-G-T | 16228721-G-T | P6_Prx | ** | |||||
18593521-T-A | 16481641-T-A | ** | ||||||
18707207-C-G | 16595327-C-G | ** | ||||||
18728760-T-A | 16616880-T-A | ** | ||||||
18730997-A-G | 16619117-A-G | ** | ||||||
18749652-A-G | 16637772-A-G | ** | ||||||
18756128-C-A | 16644248-C-A | ** | ||||||
18794259-A-G | 16682379-A-G | ** | ||||||
18794309-C-T | 16682429-C-T | ** | ||||||
18795045-G-A | 16683165-G-A | ** | ||||||
18858659-G-A | 16746779-G-A | ** | ||||||
18930457-C-A | 16818577-C-A | ** | ||||||
18930513-C-A | 16818633-C-A | ** | ||||||
18975876-A-G | 16863996-A-G | ** | ||||||
18975877-A-T | 16863997-A-T | ** | ||||||
19112566-T-C | 17000686-T-C | ** | ||||||
19135302-C-A | 17023422-C-A | ** | ||||||
19146585-T-TG | 17034705-T-TG | ** | ||||||
19211677-C-A | 17099797-C-A | ** | ||||||
19213564-A-T | 17101684-A-T | ** | ||||||
19246082-G-T | 17134202-G-T | FTB58508 | ** | |||||
19251818-G-T | 17139938-G-T | ** | ||||||
19253041-A-G | 17141161-A-G | ** | ||||||
19416764-A-C | 17304884-A-C | ** | ||||||
19518730-T-G | 17406850-T-G | ** | ||||||
19575394-T-TG | 17463514-T-TG | P5_Prx | ** | |||||
19678848-A-G | 17566968-A-G | P5_Prx | ** | |||||
19868180-A-G | 17756300-A-G | P5_Prx | ** | |||||
20306304-C-A | 18144418-C-A | P5_Dst | ** | |||||
20430443-A-AAC | 18268557-A-AAC | P5_Dst | ** | |||||
20479831-T-G | 18317945-T-G | P5_Dst | ** | |||||
20579290-T-TAC | 18417404-T-TAC | P5_Dst | ** | |||||
21125252-T-C | 18963366-T-C | ** | ||||||
21211726-C-G | 19049840-C-G | ** | ||||||
21274928-C-A | 19113042-C-A | ** | ||||||
21316862-T-C | 19154976-T-C | ** | ||||||
21387033-T-G | 19225147-T-G | ** | ||||||
21387046-T-G | 19225160-T-G | ** | ||||||
21417402-G-T | 19255516-G-T | ** | ||||||
21526838-A-T | 19364952-A-T | ** | ||||||
21588158-A-C | 19426272-A-C | ** | ||||||
21602755-C-A | 19440869-C-A | ** | ||||||
21668860-A-C | 19506974-A-C | ** | ||||||
21669902-A-G | 19508016-A-G | ** | ||||||
21708458-A-T | 19546572-A-T | ** | ||||||
21802704-C-A | 19640818-C-A | ** | ||||||
21912398-C-T | 19750512-C-T | ** | ||||||
21997861-C-A | 19835975-C-A | ** | ||||||
22011969-T-G | 19850083-T-G | ** | ||||||
22113185-C-G | 19951299-C-G | ** | ||||||
22132627-A-G | 19970741-A-G | ** | ||||||
22176088-A-G | 20014202-A-G | ** | ||||||
22689885-C-G | 20527999-C-G | ** | ||||||
22777934-G-T | 20616048-G-T | ** | ||||||
22788625-C-A | 20626739-C-A | ** | ||||||
22829521-C-A | 20667635-C-A | ** | ||||||
22874571-A-G | 20712685-A-G | ** | ||||||
22965623-C-A | 20803737-C-A | ** | ||||||
23096802-C-A | 20934916-C-A | ** | ||||||
23184517-C-A | 21022631-C-A | ** | ||||||
23188642-C-T | 21026756-C-T | ** | ||||||
23188653-T-G | 21026767-T-G | ** | ||||||
23201095-C-A | 21039209-C-A | ** | ||||||
23204914-G-A | 21043028-G-A | ** | ||||||
23206677-A-T | 21044791-A-T | ** | ||||||
23206678-G-A | 21044792-G-A | ** | ||||||
23206683-A-G | 21044797-A-G | ** | ||||||
23337043-C-T | 21175157-C-T | ** | ||||||
23789248-C-A | 21627362-C-A | ** | ||||||
23953155-C-A | 21807008-C-A | ** | ||||||
24247412-C-CCA | 22101265-C-CCA | P3_b1 | ** | |||||
24296120-A-G | 22149973-A-G | P3_t1 | ** | |||||
24405122-A-G | 22258975-A-G | ** | ||||||
24406913-G-T | 22260766-G-T | ** | ||||||
24408142-G-A | 22261995-G-A | ** | ||||||
24600665-G-T | 22454518-G-T | P3_t2 | ** | |||||
24633951-G-C | 22487804-G-C | P3_t2 | ** | |||||
25524609-C-G | 23378462-C-G | P1_gr1 | ** | |||||
25593202-C-A | 23447055-C-A | P1_gr1 | ** | |||||
25616686-A-T | 23470539-A-T | P1_gr1 | ** | |||||
25850867-G-T | 23704720-G-T | P1_Y1 | ** | |||||
25995121-G-GTATA | 23848974-G-GTATA | P1_Y1 | ** | |||||
26059264-T-A | 23913117-T-A | P1_Y1 | ** | |||||
26105969-A-G | 23959822-A-G | P1_Y1 | ** | |||||
26154004-C-T | 24007857-C-T | P1_Y1 | ** | |||||
26228635-A-G | 24082488-A-G | P1_Y1 | ** | |||||
26391598-A-T | 24245451-A-T | P1_Y1 | ** | |||||
26544707-T-G | 24398560-T-G | P1_g2 | ** | |||||
27226357-C-A | 25080210-C-A | P1_g3 | ** | |||||
27948924-G-T | 25802777-G-T | P1_Y2 | ** | |||||
27948991-G-A | 25802844-G-A | P1_Y2 | ** | |||||
27949017-T-TC | 25802870-T-TC | P1_Y2 | ** | |||||
27958083-A-AG | 25811936-A-AG | P1_Y2 | ** | |||||
28480335-A-G | 26334188-A-G | ** | ||||||
28486006-C-A | 26339859-C-A | ** | ||||||
28514766-A-T | 26368619-A-T | ** | ||||||
28519956-G-C | 26373809-G-C | ** | ||||||
28520307-C-A | 26374160-C-A | ** | ||||||
28544047-G-T | 26397900-G-T | ** | ||||||
28673106-A-C | 26526959-A-C | ** | ||||||
28673780-C-A | 26527633-C-A | ** | ||||||
28679005-A-T | 26532858-A-T | ** | ||||||
28812332-A-G | 26666185-A-G | ** | ||||||
56771115-A-C | ** | |||||||
56837277-G-T | ** | |||||||
56839685-A-C | ** | |||||||
8399151-C-A | 8531110-C-A | *** | ||||||
8661613-C-A | 8793572-C-A | *** | ||||||
13476138-A-G | 11320462-A-G | *** | ||||||
13476150-C-G | 11320474-C-G | *** | ||||||
21362558-G-A | 19200672-G-A | *** | ||||||
13476120-G-T | 11320444-G-T | *** | ||||||
13476117-C-A | 11320441-C-A | *** | ||||||
10828710-G-T | *** | |||||||
56835387-ACTCCACTCCACTCCAGTACATTCCA-A,ACTCCACTCCACTCCAGTACATTCCC | *** | |||||||
10648136-C-A | *** | |||||||
6445047-C-A | 6577006-C-A | *** | ||||||
7098900-AGT-A | 7230859-AGT-A | *** | ||||||
10861251-C-A | *** | |||||||
10970980-C-A | *** | |||||||
16084083-G-T | 13972203-G-T | *** | ||||||
11015754-G-T | *** | |||||||
15070606-C-A | 12958697-C-A | *** | ||||||
16312063-C-A | 14200183-C-A | *** | ||||||
56830176-T-C | *** | |||||||
14742127-G-A | 12630195-G-A | *** | ||||||
15423458-G-A | 13311578-G-A | *** | ||||||
13474650-C-A | 11318974-C-A | *** | ||||||
8333626-A-ACTTCTTCTT | 8465585-A-ACTTCTTCTT | 25×CTT | *** | |||||
10935548-AC-A,GC | *** | |||||||
10935558-AG-A,AT | *** | |||||||
5729633-G-T | 5861592-G-T | *** | ||||||
8343786-C-A | 8475745-C-A | *** | ||||||
10658217-C-A | *** | |||||||
10692353-G-T | *** | |||||||
10888095-T-G | *** | |||||||
10964130-T-C | *** | |||||||
13349657-C-A | 11193981-C-A | *** | ||||||
14571383-TA-T | 12459583-TA-T | *** | ||||||
17375924-G-C | 15264044-G-C | *** | ||||||
19537998-C-A | 17426118-C-A | *** | ||||||
21307182-G-T | 19145296-G-T | *** | ||||||
24404447-G-T | 22258300-G-T | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.