Tree Position

A0-T-YP2191 > P305 > L413/PF1409/V31 > M168/PF1416 > P143 > M89/PF2746 > F1329/M3658 > F929 > IJK > IJ > M170 > Z2647 > L460 > M436 > M223 > CTS10057 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
746700
20641579-A-C 18479693-A-C P4_Prx A*
13451397-C-T 11295721-C-T A*
28817637-T-C 26671490-T-C A*
20712949-A-G 18551063-A-G P4_Prx A*
20626980-G-GA 18465094-G-GA P4_Prx A*
25930464-G-T 23784317-G-T P1_Y1 A*
19797688-G-C 17685808-G-C P5_Prx A*
19793685-T-C 17681805-T-C P5_Prx A*
13467303-A-T 11311627-A-T A*
18345522-G-A 16233642-G-A P6_Prx A*
13467329-A-T 11311653-A-T A*
18300047-T-C 16188167-T-C P6_Prx A*
13687870-T-A 11532194-T-A A*
16130791-T-C 14018911-T-C P8_Prx A*
15870357-C-T 13758477-C-T YY+
21437760-T-G 19275874-T-G YY+
18097476-C-A 15985596-C-A BY119997 YY+
21774315-G-A 19612429-G-A BY135349 YY+
21117853-A-G 18955967-A-G BY130521 YY+
22269878-G-C 20107992-G-C BY50251 DYZ19 +
15543745-G-A 13431865-G-A BY102399 YY+
14224861-A-T 12104155-A-T BY94064 YY+
6680805-T-G 6812764-T-G BY526 YY+
9892338-G-A 10054729-G-A YY+
8055092-G-C 8187051-G-C BY69647 YY+
7350309-C-A 7482268-C-A BY64688 YY+
7330082-A-T 7462041-A-T YY+
7057022-G-A 7188981-G-A YY+
23529176-G-A 21367290-G-A BY55477 YY+
14064780-C-G 11944074-C-G BY92738 YY+
23467250-G-C 21305364-G-C BY145485 YY+
5887926-C-T 6019885-C-T +
13470379-C-G 11314703-C-G BY46758 +
2875426-T-C 3007385-T-C YY+
22480344-T-C 20318458-T-C DYZ19 +
22444628-C-G 20282742-C-G BY46848 DYZ19 +
2842003-C-CT 2973962-C-CT 14×T*
13446821-C-A 11291145-C-A *
13471854-G-C 11316178-G-C *
22485520-G-C 20323634-G-C DYZ19 *
13648962-AGGAAT-A 11493286-AGGAAT-A 9×GGAAT*
10888716-T-A **
10888694-T-A **
6645904-A-G 6777863-A-G **
6352983-G-T 6484942-G-T **
6225030-G-T 6356989-G-T IR3_Dst **
6225012-G-T 6356971-G-T IR3_Dst **
6206099-A-T 6338058-A-T IR3_Dst **
6037717-C-T 6169676-C-T **
5879421-T-A 6011380-T-A **
6748600-T-G 6880559-T-G **
5650593-A-AACAC 5782552-A-AACAC 18×AC**
5210763-A-G 5342722-A-G **
4870635-T-G 5002594-T-G **
4870629-T-G 5002588-T-G **
10962658-C-CA **
4205674-A-G 4337633-A-G **
10962664-TC-T **
3837476-T-C 3969435-T-C **
6688864-C-A 6820823-C-A **
6824101-TTAAAA-T 6956060-TTAAAA-T **
6822141-C-A 6954100-C-A **
8673720-G-A 8805679-G-A **
10036065-G-T 10198456-G-T **
19682825-T-G 17570945-T-G P5_Prx **
9741234-C-A 9903625-C-A IR3_Prx **
9713355-CA-C 9875746-CA-C IR3_Prx **
9713337-CA-C 9875728-CA-C IR3_Prx **
10888665-T-C **
9419014-T-A 9581405-T-A **
8674011-G-T 8805970-G-T **
8112608-G-T 8244567-G-T **
13839789-T-G 11719083-T-G **
10888666-T-A **
7994250-C-A 8126209-C-A **
7695630-T-G 7827589-T-G **
7643056-G-A 7775015-G-A **
10888674-TC-T **
7307762-T-C 7439721-T-C **
7079293-C-A 7211252-C-A **
10888685-T-A **
3143331-G-T 3275290-G-T **
2745293-C-A 2877252-C-A **
8085719-T-A 8217678-T-A **
18685992-GAAA-G 16574112-GAAA-G 13×A**
10799568-T-C **
10799564-CT-C **
21462713-G-A 19300827-G-A **
10939785-T-G **
10789494-A-T **
10949155-C-T **
14071379-TGA-T 11950673-TGA-T **
28468253-CT-C 26322106-CT-C 13×T**
11011679-C-CTCTGT **
10802672-C-T **
26421452-CT-C 24275305-CT-C P1_Y1 12×T**
10889589-G-T **
10783906-T-C **
10889595-C-T **
10754871-T-C **
7681924-TAAA-T 7813883-TAAA-T 14×A**
11011674-T-C **
11011734-G-C **
10840398-A-T **
18863739-G-T 16751859-G-T **
2662274-T-G 2794233-T-G **
9354013-G-A 9516404-G-A **
14479703-T-C 12358972-T-C **
18277996-C-TA 16166116-C-TA P6_Prx **
16816281-G-T 14704401-G-T **
13839797-A-G 11719091-A-G **
10862480-C-A **
10689000-C-T **
17427480-G-GA 15315600-G-GA 9×A**
5644950-C-A 5776909-C-A **
17306249-T-G 15194369-T-G **
10775075-C-G **
10843752-C-T **
17361058-CAAAAAAA-C 15249178-CAAAAAAA-C 25×A**
21503994-ATTTTT-A 19342108-ATTTTT-A 19×T**
14886399-CAAAAA-C 12774465-CAAAAA-C 21×A**
10998306-TACTCC-T **
14610575-T-G 12498777-T-G **
13696666-A-T 11540990-A-T **
10752518-CAA-C **
10652159-A-C **
10949075-C-T **
10752522-TCAA-T **
16001483-G-T 13889603-G-T **
19212285-T-A 17100405-T-A BY154834 **
19058878-C-G 16946998-C-G **
18604189-A-T 16492309-A-T **
17027206-T-C 14915326-T-C **
16816317-G-T 14704437-G-T **
16679124-TG-T 14567244-TG-T **
16471766-C-A 14359886-C-A **
16340542-A-G 14228662-A-G **
16056767-G-A 13944887-G-A **
15763253-C-T 13651373-C-T **
20273398-T-TC 18111512-T-TC P5_Dst **
15606382-G-A 13494502-G-A **
15557029-GCCT-G 13445149-GCCT-G **
15480071-G-A 13368191-G-A **
15430670-C-A 13318790-C-A **
15322539-C-A 13210657-C-A **
15023012-A-G 12911100-A-G **
14869459-C-T 12757529-C-T **
14834484-T-C 12722551-T-C **
14742235-C-A 12630303-C-A **
19663289-A-ATG 17551409-A-ATG P5_Prx **
20850612-ATGTG-A 18688726-ATGTG-A P4_Dst 11×TG**
14355008-TG-T 12234303-TG-T **
22483301-G-C 20321415-G-C DYZ19 **
28544581-C-G 26398434-C-G **
27917529-C-A 25771382-C-A P1_Y2 **
25536958-C-A 23390811-C-A P1_gr1 **
24523431-T-G 22377284-T-G **
24417170-A-G 22271023-A-G **
23845794-G-C 21683908-G-C **
23373644-G-C 21211758-G-C **
23299644-A-G 21137758-A-G **
22755400-G-T 20593514-G-T 14×A**
22315598-T-G 20153712-T-G DYZ19 **
20852372-T-G 18690486-T-G P4_Dst **
22297930-A-G 20136044-A-G BY46108 DYZ19 **
22287084-AG-A 20125198-AG-A DYZ19 **
22117838-A-G 19955952-A-G **
22099634-TTATTA-T 19937748-TTATTA-T **
22022960-T-A 19861074-T-A **
21959435-C-A 19797549-C-A **
21462714-A-G 19300828-A-G **
21429755-A-G 19267869-A-G **
21091076-A-C 18929190-A-C **
14440038-G-T 12319311-G-T **
14233388-T-A 12112682-T-A **
10773601-A-G **
10925061-T-G **
10949146-TCTACA-T **
10949137-C-A **
10949118-T-C **
10949117-A-G **
10949095-C-A **
13223454-G-A 11067778-G-A **
10941466-T-G **
10941464-C-G **
10936286-C-A **
10890091-C-G **
10964566-C-T **
10884078-A-T **
10879463-A-G **
10864994-ATTCAT-A **
10858261-T-C **
10824261-C-T **
10806606-C-T **
10799569-T-TC **
10793291-A-C **
10783910-A-G **
10949157-C-A **
10984791-T-C **
13983695-G-T 11862989-G-T **
11022330-T-C **
13944470-A-C 11823764-A-C **
13939351-A-G 11818645-A-G **
11674292-T-A **
11673067-G-A **
11669052-G-T **
11654682-TCGAAA-T **
13707353-G-A 11551677-G-A **
13476248-A-G 11320572-A-G **
13433489-A-C 11277813-A-C **
11022309-G-T **
10985456-C-T **
11022301-C-T **
11022300-T-A **
11022297-T-A **
11022287-A-C **
11022203-T-G **
11010126-T-G **
10998080-A-T **
10997597-C-T **
10987293-CT-C **
10987291-C-CA **
13223456-G-GAAGGA 11067780-G-GAAGGA **
11011727-T-G **
13223404-G-GAGCA 11067728-G-GAGCA **
10932877-T-C **
10869104-C-T **
10664798-T-A **
10802677-T-C **
6315010-G-T 6446969-G-T BY50310 IR3_Dst **
10793280-C-T **
10918042-A-G **
11023310-C-G **
13466397-G-T 11310721-G-T **
11038177-T-C **
10789557-C-T **
13223393-A-C 11067717-A-C **
10789534-CTTCAG-C **
10858490-C-T **
10858487-C-T **
10858480-C-T **
10858450-T-C **
56838597-GT-A **
10971252-T-C **
10889217-C-T BY43003 **
10889215-A-C BY45708 **
15364058-TCAA-T 13252178-TCAA-T **
10869112-C-T **
56748159-G-C **
11015226-A-AC **
8549032-GTTTTT-G 8680991-GTTTTT-G 23×T**
56851219-C-T **
10884062-G-C **
10859985-C-CTGTTG **
10859983-C-T **
10782747-G-T **
10782731-C-T **
10964145-G-T **
10664800-C-CACTAA **
10962634-A-C **
10832368-C-G **
11022305-C-A **
10884083-C-A **
19957279-T-TC 17845399-T-TC P5_Prx **
10918075-C-G **
10918074-G-A **
10918073-T-G **
10918067-A-T **
10918065-C-A **
10918062-C-T **
28814867-T-G 26668720-T-G **
11015196-A-G **
11030822-T-C **
11015219-C-T **
10804452-T-G **
13486666-G-A 11330990-G-A **
28818237-A-T 26672090-A-T **
13854318-C-A 11733612-C-A **
13486659-A-T 11330983-A-T **
13486656-T-G 11330980-T-G **
58986799-G-A 56840652-G-A **
6662086-AT-A 6794045-AT-A 11×T**
22315611-A-C 20153725-A-C DYZ19 **
13486671-A-C 11330995-A-C **
13486670-T-C 11330994-T-C **
13486661-C-A 11330985-C-A **
7623774-T-TA 7755733-T-TA 11×A**
59020397-TAACC-T 56874250-TAACC-T **
22287079-G-T 20125193-G-T DYZ19 **
18686154-C-A 16574274-C-A Y22809Y22172 **
18715579-T-C 16603699-T-C **
2813410-CT-C 2945369-CT-C 10×T**
26099827-GTC-G 23953680-GTC-G P1_Y1 27×TC**
22489654-C-T 20327768-C-T DYZ19 **
13140550-T-C 10630036-T-C **
13138430-T-G 10627916-T-G **
22739716-C-CA 20577830-C-CA 24×A**
14771126-CTTT-C 12659195-CTTT-C 16×T**
15041209-CA-C 12929299-CA-C 10×A**
10900012-A-C **
10663435-C-T **
10899980-C-A **
10899967-A-C **
10899952-A-C **
10899947-A-C **
10852754-T-C **
10679019-T-C **
10679014-C-A **
10900023-T-C **
10900008-C-A **
10663427-CCT-C **
6775900-C-CT 6907859-C-CT 11×T**
3389049-T-TA 3521008-T-TA 10×A**
10873115-T-C **
10873111-T-G **
19682820-T-G 17570940-T-G P5_Prx **
10960339-G-T **
10807387-G-C **
23196627-TAA-T 21034741-TAA-T 17×A**
10873120-T-A **
2861534-CAAAA-C 2993493-CAAAA-C 25×A**
8101956-A-AT 8233915-A-AT 11×T**
10949599-G-A **
6933402-G-A 7065361-G-A BY62337 **
10876012-T-A **
10888664-G-A **
10802718-A-T **
18863638-G-T 16751758-G-T **
13223411-A-G 11067735-A-G **
10949605-C-A **
10949591-T-A **
10949555-C-T **
10949540-C-T **
56838596-T-A **
10949168-T-C **
14294342-G-GAA 12173636-G-GAA 13×A**
11016073-AT-A **
11015144-G-C **
2721876-ATT-A 2853835-ATT-A 14×T**
6675843-G-GAA 6807802-G-GAA 12×A**
10683221-C-A **
10865816-A-ACCATG **
10793236-A-ACTAAC **
10987296-T-C **
6330231-CA-C 6462190-CA-C IR3_Dst **
20128520-C-A 18016640-C-A P5_Dst **
10888710-C-A **
10962650-T-C **
10932919-C-G **
10932896-A-T **
10932885-C-CT **
10932881-AC-A **
10949119-G-A **
16907188-A-AT 14795308-A-AT FGC63891 9×T**
13468604-G-A 11312928-G-A **
9419029-A-G 9581420-A-G **
9419028-C-T 9581419-C-T **
11010127-T-G **
10888668-C-A **
13839785-G-A 11719079-G-A **
9798081-C-T 9960472-C-T **
22287102-G-T 20125216-G-T DYZ19 **
10888682-T-C **
21462697-G-T 19300811-G-T **
28818277-G-T 26672130-G-T **
21472190-T-A 19310304-T-A FGC31329 **
56748137-G-C **
11038160-C-G **
10917985-T-C **
10630023-C-G **
10672228-C-G **
10630028-C-A **
10917966-C-G **
10917955-T-G **
10772427-A-G **
11038184-C-G **
56699819-T-G **
56699830-G-T **
56748150-T-C **
21117094-C-A 18955208-C-A ***
21183711-T-TA 19021825-T-TA ***
13811216-A-T 11690510-A-T ***
14170816-CAA-C 12050110-CAA-C 15×A***
8171748-T-A 8303707-T-A ***
21088374-C-A 18926488-C-A ***
58977214-C-A 56831067-C-A ***
21099740-CTTT-C,CTT 18937854-CTTT-C,CTT 16×T***
10939099-T-C,G ***
10926235-G-T ***
10926238-C-T ***
28814859-G-A 26668712-G-A ***
10763316-C-T ***
10926253-T-G ***
8599677-ATTT-A 8731636-ATTT-A 17×T***
2702927-TA-T 2834886-TA-T 9×A***
19360931-A-G 17249051-A-G ***
19296708-T-C 17184828-T-C ***
19122284-G-T 17010404-G-T ***
19111289-C-A 16999409-C-A ***
10921143-T-C ***
18917326-A-AT 16805446-A-AT 8×T***
18900096-C-G 16788216-C-G ***
28814860-A-C 26668713-A-C ***
8143991-G-GA 8275950-G-GA 11×A***
21785356-T-C 19623470-T-C ***
14101717-CAAA-C 11981011-CAAA-C 15×A***
14772676-A-AT 12660745-A-AT 21×T***
18965791-C-A 16853911-C-A ***
13449219-T-A 11293543-T-A ***
27862535-TGAGAGA-T,TGAGA 25716388-TGAGAGA-T,TGAGA P1_Y2 22×GA***
10926246-A-C ***
18190758-C-A 16078878-C-A ***
13446838-T-C 11291162-T-C ***
21432047-AT-A 19270161-AT-A 11×T***
7101631-T-C 7233590-T-C ***
21193154-CT-C 19031268-CT-C 11×T***
6688915-CA-C 6820874-CA-C 8×A***
23380576-A-G 21218690-A-G ***
17251895-CA-C 15140015-CA-C 11×A***
17819391-AT-A 15707511-AT-A 9×T***
23272178-C-A 21110292-C-A ***
23091370-C-A 20929484-C-A ***
22887687-CTT-C,CT 20725801-CTT-C,CT 15×T***
6667819-C-CT 6799778-C-CT 9×T***
21988729-C-A 19826843-C-A ***
10776207-T-C ***
18144129-C-A 16032249-C-A ***
7471535-A-T 7603494-A-T IR1_L ***
10807069-A-C,T ***
7101772-T-TA 7233731-T-TA 10×A***
22098254-A-G 19936368-A-G 9×T***
22066278-C-A 19904392-C-A ***
13599580-TGAGATGAGATGAAATGAG-A 11443904-TGAGATGAGATGAAATGAG-A ***
56842852-C-A ***
23804588-TA-T 21642702-TA-T ***
56842870-G-C ***
10987861-T-G ***
11030829-T-C ***
11030837-C-T ***
10939071-CA-C,CC ***
8874970-CTTT-C 9006929-CTTT-C 17×T***
7409901-TA-T,TAA 7541860-TA-T,TAA 19×A***
10821857-A-C,T ***
21425339-CTT-C,CT 19263453-CTT-C,CT 24×T***
13469421-A-G 11313745-A-G ***
13469436-C-G 11313760-C-G ***
6757883-G-T 6889842-G-T ***
56839402-G-A ***
56839421-A-T ***
9859192-CAAAA-C 10021583-CAAAA-C 17×A***
10692141-A-G,T ***
13855764-G-A 11735058-G-A ***
15936379-CAA-C 13824499-CAA-C 12×A***
23292130-ATT-A 21130244-ATT-A 13×T***
19449455-G-T 17337575-G-T ***
10889252-C-A ***
28793801-G-A,T 26647654-G-A,T ***
8085753-A-G 8217712-A-G ***
2693232-C-T 2825191-C-T FGC33600 ***
2742659-CAA-C,CA 2874618-CAA-C,CA 12×A***
10987855-A-G ***
2693223-C-CT 2825182-C-CT ***
7285742-C-A 7417701-C-A ***
7361449-C-CAA 7493408-C-CAA 17×A***
13453651-T-G 11297975-T-G ***
2798710-ATTT-A,AT 2930669-ATTT-A,AT 20×T***
11030806-C-T ***
17458930-AT-A,ATT 15347050-AT-A,ATT 17×T***
10926226-T-C ***
56842872-C-G ***
10754966-C-A ***
10887964-T-C ***
10818945-C-A ***
23054258-GA-G 20892372-GA-G 9×A***
17283113-GTT-G,GT 15171233-GTT-G,GT 13×T***
10744330-C-T ***
9879465-T-C 10041856-T-C ***
13458032-A-G 11302356-A-G ***
15864475-C-A 13752595-C-A ***
15739707-A-C 13627827-A-C ***
13811212-T-G 11690506-T-G ***
11022053-C-G ***
13811219-G-A 11690513-G-A ***
11030804-C-T ***
18725341-CTT-C 16613461-CTT-C 12×T***
3728059-C-A 3860018-C-A ***
2884494-A-G 3016453-A-G ***
28814862-T-A 26668715-T-A ***
10926230-G-C ***
28711545-GGTGTGT-G 26565398-GGTGTGT-G 21×GT***
14359630-A-G 12238925-A-G ***
10648089-T-C ***
13450125-C-G 11294449-C-G ***
10807356-A-G ***
28791325-A-G 26645178-A-G ***
14022379-C-A 11901673-C-A ***
10988817-C-T ***
14750042-C-T 12638111-C-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 746700854708069710386923383
Used in age calculations854708069710386923383
Counts of SNPs1717
Variant counts last updated 2018-09-05 20:27:44.



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