Tree Position

A0-T-YP2191 > P305[A1] > A1b > BT/A1b2 > M168/PF1416[CT] > P143[CF] > M89/PF2746[F] > F1329/M3658[GHI > F929[HIJK] > IJK > K > M526[K2] > P295[P] > M207[R] > M173[R1] > L146/M420[R1a] > M459 > M198 > M417 > Z645 > Z93 > Z94 > Y40 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
333085
13687261-A-T 11531585-A-T A*
20047452-A-C 17935572-A-C P5_Prx A*
20055047-G-A 17943167-G-A P5_Prx A*
20646665-C-T 18484779-C-T P4_Prx A*
22286210-T-C 20124324-T-C DYZ19 A*
22305038-C-G 20143152-C-G DYZ19 A*
26393848-A-G 24247701-A-G P1_Y1 A*
2774524-G-A 2906483-G-A FGC30892 YY+
2794254-G-A 2926213-G-A FGC30893 YY+
6427323-T-C 6559282-T-C FGC30895 +
7733774-G-A 7865733-G-A FGC30896 YY+
7820631-T-A 7952590-T-A BY67945 YY+
8197975-C-G 8329934-C-G FGC30898 YY+
8982409-G-A 9144800-G-A FGC30899 Y+
9674098-T-G 9836489-T-G FGC82782 IR3_Prx +
9960975-C-T 10123366-C-T FGC36009 Y+
13695451-T-A 11539775-T-A BY88919 +
13817284-A-G 11696578-A-G BY90442 +
14503020-G-A 12391225-G-A FGC82783 YY+
15558536-A-G 13446656-A-G FGC30900 YY+
15661100-T-A 13549220-T-A FGC30901 YY+
16537619-C-T 14425739-C-T FGC30890 YY+
16969745-T-C 14857865-T-C FGC30902 YY+
17053779-G-C 14941899-G-C FGC30903 YY+
18426152-A-G 16314272-A-G FGC30904 P6_Gap +
18639246-A-G 16527366-A-G FGC30905 YY+
19534408-G-A 17422528-G-A FGC30906 YY+
21755421-A-C 19593535-A-C FGC30907 YY+
22036827-A-T 19874941-A-T FGC30908 YY+
23010360-G-C 20848474-G-C FGC30909 YY+
23256285-G-A 21094399-G-A YY+
23335688-CT-C 21173802-CT-C +
23538071-C-T 21376185-C-T FGC30910 YY+
24391636-A-C 22245489-A-C FGC30911 Y+
28814235-T-A 26668088-T-A FGC82785 +
13478782-C-A 11323106-C-A *
3131519-CTCTTCTCTTC-C,CTCTTCTCT 3263478-CTCTTCTCTTC-C,CTCTTCTCT *
16441967-CTCTC-C,CTATA 14330087-CTCTC-C,CTATA *
18384159-A-AAGGACCCT 16272279-A-AAGGACCCT P6_Gap *
22237760-C-T 20075874-C-T BY213726 DYZ19 *
22287366-C-G 20125480-C-G DYZ19 *
58979250-C-T 56833103-C-T **
9371502-G-A 9533893-G-A **
13476831-T-C 11321155-T-C **
58982176-G-A 56836029-G-A **
58976432-T-C 56830285-T-C **
16848496-C-A 14736616-C-A **
9234259-C-A 9396650-C-A **
16583339-C-T 14471459-C-T MF1266 **
13803208-C-A 11682502-C-A **
4862666-C-A 4994625-C-A PR4371 **
7195245-G-A 7327204-G-A **
18733562-AT-A 16621682-AT-A 9×T**
14981955-C-A 12870023-C-A **
2888836-A-G 3020795-A-G Y87775PH97 **
22427804-G-A 20265918-G-A DYZ19 **
13349577-C-A 11193901-C-A **
4505388-C-T 4637347-C-T **
4505392-C-T 4637351-C-T **
17502897-T-C 15391017-T-C **
6944936-T-C 7076895-T-C **
22914672-A-C 20752786-A-C Y78880 **
4604467-C-A 4736426-C-A **
10988844-C-G **
11036084-A-G **
15733818-T-A 13621938-T-A **
16146483-G-A 14034603-G-A P8_Dst **
10988807-C-A **
13601972-C-A 11446296-C-A **
10685816-C-G **
10677386-C-A **
19407606-CTTTT-C 17295726-CTTTT-C 17×T**
56829852-A-C **
10887961-C-T **
10887970-T-A **
10887985-T-TCCACA **
13922551-C-A 11801845-C-A **
19775333-TTG-T 17663453-TTG-T P5_Prx **
11036072-T-C **
11036085-C-A **
6693040-C-A 6824999-C-A **
10925506-T-A **
10992908-C-A **
16765554-C-A 14653674-C-A **
10986670-N-A **
10973981-C-A **
15971206-C-T 13859326-C-T **
25995072-A-T 23848925-A-T P1_Y1 **
20645891-G-T 18484005-G-T P4_Prx **
13471982-G-A 11316306-G-A **
10688015-T-A **
4534219-C-A 4666178-C-A **
10685761-C-T **
10685777-C-T **
13457696-C-T 11302020-C-T **
13457700-C-G 11302024-C-G **
10929506-C-A **
7392245-C-A 7524204-C-A **
4888508-C-A 5020467-C-A **
56861714-C-G **
19075362-C-A 16963482-C-A **
16451644-C-A 14339764-C-A **
19509766-C-A 17397886-C-A **
20384617-A-ATG 18222731-A-ATG P5_Dst **
6841-G-T **
8720636-C-A 8852595-C-A **
10685814-T-C **
4389588-C-T 4521547-C-T **
10760376-A-T **
10760379-C-G **
15132065-ATTT-A 13020152-ATTT-A 14×T**
9583457-C-CT 9745848-C-CT IR3_Prx 10×T**
13202518-C-A 11046842-C-A **
7764515-C-A 7896474-C-A **
10655772-C-T **
10655803-T-C **
6510657-AT-A 6642616-AT-A **
4505396-C-T 4637355-C-T **
7248593-C-A 7380552-C-A **
10822687-A-T **
17821844-C-A 15709964-C-A **
7239598-C-A 7371557-C-A **
21334649-C-A 19172763-C-A **
3061093-C-A 3193052-C-A **
15128166-A-G 13016253-A-G **
3439970-C-A 3571929-C-A **
10694009-T-C **
14561838-T-TTC 12450039-T-TTC **
56830297-C-T **
14428082-C-A 12307357-C-A **
10822677-A-T **
10822678-T-C **
20943478-TG-T 18781592-TG-T P4_Dst **
56837191-C-A **
2790411-C-A 2922370-C-A **
7996836-C-A 8128795-C-A **
7414275-C-T 7546234-C-T **
10988822-C-A **
10974027-C-A **
16146485-AAG-A 14034605-AAG-A P8_Dst **
4389594-G-T 4521553-G-T **
13855580-G-C 11734874-G-C **
21182397-C-T 19020511-C-T 20×T**
14339364-C-A 12218659-C-A **
14432251-C-A 12311524-C-A **
13839808-A-C 11719102-A-C **
17741428-C-A 15629548-C-A FT147117 **
28773581-C-A 26627434-C-A **
4374359-C-A 4506318-C-A **
10937707-C-A **
3785661-G-T 3917620-G-T **
15290043-C-A 13178142-C-A **
13485391-C-A 11329715-C-A **
10688033-T-G **
13445327-C-A 11289651-C-A **
7717902-A-G 7849861-A-G **
5743186-C-A 5875145-C-A **
5409654-C-A 5541613-C-A **
13471964-C-T 11316288-C-T **
13610966-C-A 11455290-C-A **
5905880-G-A 6037839-G-A **
14316275-C-A 12195569-C-A **
8389608-G-A 8521567-G-A **
19249534-C-A 17137654-C-A **
28605425-C-A 26459278-C-A **
25990122-A-T 23843975-A-T P1_Y1 **
15422940-C-A 13311060-C-A **
8052070-C-A 8184029-C-A **
2885454-C-A 3017413-C-A **
10817350-A-T **
13457691-C-A 11302015-C-A **
16598981-CAACAA-C 14487101-CAACAA-C **
4064047-C-A 4196006-C-A **
14069199-C-A 11948493-C-A **
7313109-C-A 7445068-C-A **
14226574-C-A 12105868-C-A **
10685804-T-TATCAC **
16712952-C-A 14601072-C-A **
24424207-G-T 22278060-G-T **
18996485-C-A 16884605-C-A **
7099208-C-A 7231167-C-A **
18299543-T-TTATGC 16187663-T-TTATGC P6_Prx **
28808617-G-T 26662470-G-T 5×TGGAA**
28698715-C-A 26552568-C-A **
4208168-C-A 4340127-C-A **
4701324-G-T 4833283-G-T **
17718365-C-A 15606485-C-A **
28722450-C-A 26576303-C-A **
7774146-C-A 7906105-C-A **
18226238-C-A 16114358-C-A **
4002430-C-A 4134389-C-A **
4070203-C-A 4202162-C-A **
10817314-C-G **
10817316-G-C **
16464731-C-A 14352851-C-A **
13457725-C-T 11302049-C-T **
5200143-C-A 5332102-C-A **
10911985-C-A **
4201031-C-A 4332990-C-A **
28741218-C-A 26595071-C-A **
6510722-C-A 6642681-C-A **
21391649-C-A 19229763-C-A **
15971192-C-A 13859312-C-A **
5242538-C-A 5374497-C-A **
4863228-G-T 4995187-G-T **
14195307-A-G 12074601-A-G **
21951890-C-A 19790004-C-A **
18763783-G-T 16651903-G-T **
11037182-C-A **
10988847-C-T **
17128659-C-A 15016779-C-A **
22518395-T-C 20356509-T-C **
15816425-G-A 13704545-G-A **
21299177-C-A 19137291-C-A **
5586739-G-T 5718698-G-T **
7426266-C-A 7558225-C-A **
20360184-A-AT 18198298-A-AT P5_Dst **
4075750-G-T 4207709-G-T **
7336988-C-A 7468947-C-A **
16920153-C-A 14808273-C-A **
14061366-ATTTTTT-A 11940660-ATTTTTT-A 17×T**
5309567-C-A 5441526-C-A **
4240464-C-A 4372423-C-A **
23052497-C-A 20890611-C-A **
22092886-C-A 19931000-C-A **
24070737-C-A 21924590-C-A P3_b1 **
16295845-C-A 14183965-C-A **
7378492-A-C 7510451-A-C **
10837862-A-T **
27398507-T-A 25252360-T-A P1_g3 **
9865283-C-A 10027674-C-A **
18976543-C-A 16864663-C-A **
15045563-C-A 12933653-C-A **
16648317-C-A 14536437-C-A **
17306494-C-A 15194614-C-A **
7155354-C-A 7287313-C-A **
10759334-A-T **
4305261-G-T 4437220-G-T **
11014155-C-A **
21885966-C-A 19724080-C-A **
19071681-G-T 16959801-G-T **
20231753-AT-A 18069867-AT-A P5_Dst 8×T**
17445456-C-A 15333576-C-A **
7033445-C-A 7165404-C-A **
9964381-C-A 10126772-C-A **
10988802-T-A **
16274282-C-A 14162402-C-A **
13880909-C-A 11760203-C-A **
16007259-C-A 13895379-C-A **
9865233-C-A 10027624-C-A **
15527759-C-A 13415879-C-A **
17653825-C-A 15541945-C-A **
10789240-C-A **
25995093-AGG-A 23848946-AGG-A P1_Y1 **
15323560-C-T 13211678-C-T **
18801427-C-A 16689547-C-A **
7217458-C-A 7349417-C-A **
10893455-C-A **
2980276-C-A 3112235-C-A **
3853748-C-A 3985707-C-A **
14425594-C-A 12304869-C-A **
7033556-C-A 7165515-C-A **
10787610-T-C **
2740570-C-A 2872529-C-A **
2774057-C-A 2906016-C-A **
2814940-C-A 2946899-C-A **
2842953-C-A 2974912-C-A **
3016365-T-C 3148324-T-C **
3083524-G-C 3215483-G-C **
3186131-G-T 3318090-G-T **
3276164-G-T 3408123-G-T **
3389325-C-A 3521284-C-A 9×T**
3533813-G-T 3665772-G-T **
3594222-C-A 3726181-C-A **
3605918-T-G 3737877-T-G **
3605967-G-A 3737926-G-A **
3648490-A-G 3780449-A-G **
3653452-G-T 3785411-G-T **
3733068-G-T 3865027-G-T **
3759299-T-C 3891258-T-C **
3791400-T-C 3923359-T-C **
3849477-C-A 3981436-C-A **
4047736-G-A 4179695-G-A FT165902 **
4049969-A-G 4181928-A-G **
4177279-GA-G 4309238-GA-G **
4281752-A-G 4413711-A-G **
4281771-G-T 4413730-G-T **
4301459-G-A 4433418-G-A **
4447297-A-T 4579256-A-T **
4705908-G-T 4837867-G-T **
4901590-C-A 5033549-C-A **
4974095-C-A 5106054-C-A **
5022326-C-A 5154285-C-A **
5127736-A-T 5259695-A-T **
5135520-T-C 5267479-T-C **
5274973-G-A 5406932-G-A **
5282831-G-T 5414790-G-T **
5414288-G-T 5546247-G-T **
5650649-C-A 5782608-C-A **
5720543-A-G 5852502-A-G FT308379 **
5736533-C-A 5868492-C-A **
5742560-T-G 5874519-T-G **
5782019-A-G 5913978-A-G **
5799900-AT-A 5931859-AT-A **
5824333-C-T 5956292-C-T FGC30894 **
5859938-A-G 5991897-A-G **
5904239-G-T 6036198-G-T **
5911289-G-T 6043248-G-T **
5928122-A-G 6060081-A-G **
5928162-C-A 6060121-C-A **
6130199-A-T 6262158-A-T **
6651375-A-C 6783334-A-C **
6709116-A-G 6841075-A-G **
6768877-TGCGGTG-T 6900836-TGCGGTG-T **
6786593-G-A 6918552-G-A **
6798722-C-A 6930681-C-A **
6806764-A-C 6938723-A-C **
6934777-C-G 7066736-C-G **
7094307-G-A 7226266-G-A **
7109278-C-G 7241237-C-G **
7111638-CT-C 7243597-CT-C **
7186794-C-A 7318753-C-A **
7363909-A-T 7495868-A-T **
7392446-C-A 7524405-C-A **
7422223-T-C 7554182-T-C **
7564215-T-C 7696174-T-C **
7661164-C-A 7793123-C-A **
7661510-T-C 7793469-T-C **
7927953-A-T 8059912-A-T FGC30897 **
8043259-A-C 8175218-A-C **
8043315-G-C 8175274-G-C **
8092156-G-A 8224115-G-A **
8153880-C-T 8285839-C-T **
8154110-C-A 8286069-C-A **
8214950-C-T 8346909-C-T **
8384774-C-A 8516733-C-A **
8735322-C-A 8867281-C-A **
8749031-G-A 8880990-G-A FT167930 **
8762137-C-A 8894096-C-A **
9116931-G-A 9279322-G-A **
9436670-C-A 9599061-C-A **
9511468-CA-C 9673859-CA-C **
9725138-A-G 9887529-A-G IR3_Prx **
9830778-T-C 9993169-T-C **
9907261-C-A 10069652-C-A **
9955385-G-A 10117776-G-A **
9996205-A-C 10158596-A-C **
10018169-C-A 10180560-C-A **
10032211-T-C 10194602-T-C **
10033195-T-C 10195586-T-C **
10653276-G-T **
10661684-C-G **
10785273-C-CATATCATTCTGTTCAGGTTA **
10785290-T-TTCTCC **
10858869-C-T **
10858886-A-G **
10868494-T-A **
10869828-G-T **
10876121-C-A **
10883763-A-C **
10946841-C-T **
10959160-C-T **
10975227-C-A **
10988840-C-G **
10988842-C-T **
10988876-A-G **
11005028-T-A **
11010845-C-A **
11015623-A-G **
13256147-C-T 11100471-C-T **
13258765-G-A 11103089-G-A **
13291352-C-A 11135676-C-A **
13311706-C-A 11156030-C-A **
13435092-T-C 11279416-T-C **
13471968-C-A 11316292-C-A **
13520663-C-A 11364987-C-A **
13567196-C-A 11411520-C-A **
11645866-TGGAATG-T **
13800963-C-T 11680257-C-T **
13945215-C-A 11824509-C-A **
13961398-A-G 11840692-A-G **
13980064-T-C 11859358-T-C **
14144109-C-A 12023403-C-A **
14355014-T-C 12234309-T-C **
14356553-T-A 12235848-T-A **
14361756-T-C 12241051-T-C **
14430643-T-C 12309916-T-C **
14442965-C-A 12322238-C-A **
14461403-T-G 12340676-T-G **
14461457-A-C 12340730-A-C **
14467668-A-C 12346937-A-C **
14508614-G-A 12396819-G-A **
14787796-G-A 12675866-G-A **
14933685-C-A 12821750-C-A **
14964151-C-CT 12852226-C-CT **
14981715-G-T 12869791-G-T **
14990142-T-C 12878227-T-C **
14994343-C-A 12882428-C-A **
15034716-T-A 12922804-T-A **
15106919-C-A 12995006-C-A **
15157636-C-A 13045723-C-A **
15323557-C-A 13211675-C-A **
15323562-G-A 13211680-G-A **
15323565-T-C 13211683-T-C **
15323568-C-T 13211686-C-T **
15445331-C-A 13333451-C-A **
15647994-C-T 13536114-C-T **
15655576-A-G 13543696-A-G **
15679845-A-G 13567965-A-G **
15684423-C-A 13572543-C-A **
15687892-C-A 13576012-C-A **
15747446-C-A 13635566-C-A **
15749325-C-A 13637445-C-A **
15753172-C-A 13641292-C-A **
15775054-C-A 13663174-C-A **
15792857-C-A 13680977-C-A **
16015202-C-G 13903322-C-G **
16020761-G-T 13908881-G-T **
16020821-C-A 13908941-C-A **
16030340-C-A 13918460-C-A **
16037220-C-A 13925340-C-A **
16052804-C-A 13940924-C-A **
16271121-C-A 14159241-C-A **
16437940-C-A 14326060-C-A **
16583343-C-T 14471463-C-T **
16750108-T-G 14638228-T-G **
16750111-G-A 14638231-G-A **
16826620-A-G 14714740-A-G **
17039209-C-A 14927329-C-A **
17042816-C-G 14930936-C-G **
17175323-A-G 15063443-A-G **
17302199-A-T 15190319-A-T FGC82784 **
17313710-C-T 15201830-C-T **
17379919-T-C 15268039-T-C **
17380672-C-A 15268792-C-A **
17502742-T-G 15390862-T-G **
17545845-G-C 15433965-G-C **
17548727-C-T 15436847-C-T **
17756718-T-C 15644838-T-C **
17860174-G-T 15748294-G-T **
17876482-G-A 15764602-G-A **
17886559-C-G 15774679-C-G **
17898000-C-A 15786120-C-A **
18086006-G-A 15974126-G-A FT231937 **
18190377-C-A 16078497-C-A **
18253465-C-A 16141585-C-A **
18299541-C-CT 16187661-C-CT P6_Prx **
18701737-C-A 16589857-C-A **
18753463-T-A 16641583-T-A **
18754738-C-A 16642858-C-A **
18928630-A-T 16816750-A-T **
18928638-G-T 16816758-G-T **
19121840-G-A 17009960-G-A **
19233079-C-A 17121199-C-A **
19299348-G-T 17187468-G-T **
19404470-TATATTTTCA-T 17292590-TATATTTTCA-T **
19479134-A-C 17367254-A-C **
19558197-G-A 17446317-G-A **
19563254-A-T 17451374-A-T **
19564629-C-A 17452749-C-A **
19739340-A-AAATAAC 17627460-A-AAATAAC P5_Prx 13×AAC**
19746888-T-TGC 17635008-T-TGC P5_Prx **
19998956-G-T 17887076-G-T P5_Prx **
20132225-G-A 18020345-G-A P5_Dst **
20255009-A-G 18093123-A-G P5_Dst **
20350343-G-T 18188457-G-T P5_Dst **
20360181-G-C 18198295-G-C P5_Dst **
20434654-T-A 18272768-T-A P5_Dst **
20592997-T-G 18431111-T-G P5_Dst **
20593016-C-G 18431130-C-G P5_Dst **
20661112-T-A 18499226-T-A P4_Prx **
20699925-A-AT 18538039-A-AT P4_Prx **
20757494-A-T 18595608-A-T P4_Prx **
20758697-T-TG 18596811-T-TG P4_Prx **
20989293-T-C 18827407-T-C P4_Dst **
21072422-G-C 18910536-G-C **
21072491-A-T 18910605-A-T **
21116890-A-C 18955004-A-C **
21162427-C-T 19000541-C-T **
21225008-C-A 19063122-C-A **
21267770-C-G 19105884-C-G **
21417680-C-A 19255794-C-A **
21677091-T-A 19515205-T-A **
21697121-TC-T 19535235-TC-T **
21790664-A-G 19628778-A-G **
21791075-C-A 19629189-C-A **
21863853-A-G 19701967-A-G **
21990814-A-G 19828928-A-G **
22011393-C-A 19849507-C-A **
22166737-C-A 20004851-C-A **
22170386-G-T 20008500-G-T **
22205586-C-A 20043700-C-A **
22489816-G-A 20327930-G-A DYZ19 **
22518400-G-A 20356514-G-A **
22518404-A-T 20356518-A-T **
22518408-C-T 20356522-C-T FT140771 **
22518414-C-T 20356528-C-T **
22518422-A-T 20356536-A-T **
22518424-A-G 20356538-A-G **
22594617-G-C 20432731-G-C **
22782055-C-A 20620169-C-A **
23019877-A-T 20857991-A-T **
23026668-T-C 20864782-T-C **
23035956-C-A 20874070-C-A **
23225464-A-T 21063578-A-T **
23291345-C-G 21129459-C-G **
23459629-C-A 21297743-C-A **
23505113-C-A 21343227-C-A **
23602645-TG-T 21440759-TG-T **
23623238-G-T 21461352-G-T **
23825062-ATATTT-A 21663176-ATATTT-A **
21754221-T-G **
26012946-T-G 23866799-T-G P1_Y1 **
26012947-T-A 23866800-T-A P1_Y1 **
27637340-G-T 25491193-G-T P1_Y2 **
27968335-C-A 25822188-C-A P1_Y2 **
27968353-C-CCT 25822206-C-CCT P1_Y2 **
28465907-T-C 26319760-T-C **
28501754-A-G 26355607-A-G **
28501768-G-T 26355621-G-T **
28502008-G-T 26355861-G-T **
28529840-G-GAA 26383693-G-GAA 10×A**
28617699-G-A 26471552-G-A **
28698703-C-A 26552556-C-A **
28730845-G-A 26584698-G-A **
28768722-A-G 26622575-A-G **
28803416-C-A 26657269-C-A FT144552 **
56837188-C-A **
56846899-G-T **
31270-C-A **
58981830-C-G 56835683-C-G ***
9845285-A-AAC 10007676-A-AAC 12×AC***
13476863-T-A 11321187-T-A ***
21205186-A-G 19043300-A-G ***
13461020-T-G 11305344-T-G ***
18176647-CAT-C 16064767-CAT-C ***
13447100-TA-T,TC 11291424-TA-T,TC ***
10796667-C-A ***
56826697-GCA-CAG,G ***
11033913-C-G ***
13488843-T-A 11333167-T-A ***
15305796-C-A 13193895-C-A FTA4912 ***
2773691-TAAAA-T 2905650-TAAAA-T 19×A***
13811171-A-T 11690465-A-T ***
19187385-ATTTT-A,ATTT 17075505-ATTTT-A,ATTT 28×T***
56833710-T-C,G ***
22893370-T-TTTC,TTTCT 20731484-T-TTTC,TTTCT ***
24278270-G-GAA,GAAAG 22132123-G-GAA,GAAAG P3_b1 ***
28773545-C-A 26627398-C-A ***
8479417-TC-C,TT 8611376-TC-C,TT ***
16319420-C-A 14207540-C-A ***
15335964-G-A 13224082-G-A ***
13463477-C-A 11307801-C-A ***
14285839-C-A 12165133-C-A ***
7705084-C-A 7837043-C-A ***
13488783-G-C 11333107-G-C ***
18793541-G-T 16681661-G-T ***
13457766-C-T 11302090-C-T ***
10757346-C-A,T ***
11019148-C-A ***
3467394-C-A 3599353-C-A ***
14960461-C-A 12848536-C-A ***
2651902-TG-G,TT 2783861-TG-G,TT ***
5200614-G-T 5332573-G-T ***
56833120-C-A ***
28788123-CAATGG-C 26641976-CAATGG-C ***
2738681-C-A 2870640-C-A ***
7356009-C-A 7487968-C-A ***
8599677-ATTTTTTT-A 8731636-ATTTTTTT-A 17×T***
9403262-C-A 9565653-C-A ***
10677298-G-A ***
13447118-ATTCCATTC-A,ATTCATTTC 11291442-ATTCCATTC-A,ATTCATTTC ***
13460053-C-A 11304377-C-A ***
14194863-G-T 12074157-G-T ***
15335930-G-A 13224048-G-A ***
15335969-G-A 13224087-G-A ***
15739846-G-T 13627966-G-T ***
15950450-T-C 13838570-T-C ***
17297022-C-A 15185142-C-A ***
18915447-A-T 16803567-A-T ***
19069494-C-A 16957614-C-A ***
19228902-TAA-T,TA 17117022-TAA-T,TA 11×A***
19438622-G-A 17326742-G-A ***
22447063-G-T 20285177-G-T DYZ19 ***
27596094-C-A 25449947-C-A P1_Y2 ***
56831611-C-A ***
56831643-C-A ***
56833109-T-A ***
56833123-C-G,T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.