Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > FGC11134 > A353 > Z16250 > A114 > CTS4466/S1136 > S1115 > A541 > S1121 > Z16251 > A1134 > ~24847026-G-A > Z20766 > A806 > A2333

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
394167
13449027-T-C 11293351-T-C A*
13451448-C-T 11295772-C-T A*
13451447-T-G 11295771-T-G A*
13450962-A-T 11295286-A-T A*
13450773-T-TTCTACTCCACTGCAC 11295097-T-TTCTACTCCACTGCAC A*
13450000-C-CCAT 11294324-C-CCAT A*
28810569-G-T 26664422-G-T A*
13448017-G-A 11292341-G-A A*
13452316-A-G 11296640-A-G A*
28817153-G-A 26671006-G-A A*
13452279-G-C 11296603-G-C A*
13452288-C-T 11296612-C-T A*
13452320-G-A 11296644-G-A A*
13452332-G-C 11296656-G-C 12×ATTCCA*
13452341-C-T 11296665-C-T A*
13687793-C-G 11532117-C-G A*
13450852-A-T 11295176-A-T A*
13451388-C-G 11295712-C-G A*
13451446-T-TG 11295770-T-TG A*
13450384-C-T 11294708-C-T A*
13448424-C-A 11292748-C-A A*
13451439-C-T 11295763-C-T A*
13450842-T-TCCCCATCCCA 11295166-T-TCCCCATCCCA A*
13451465-A-T 11295789-A-T A*
13448016-C-T 11292340-C-T A*
13449304-C-A 11293628-C-A A*
13489232-C-T 11333556-C-T A*
6286901-C-CA 6418860-C-CA IR3_Dst 10×A+
22440886-A-G 20279000-A-G DYZ19 +
13471807-C-G 11316131-C-G *
13452385-TCCATTCCATTCAAATACACTCCTTG-T,TCCAAATCCACTCCATG 11296709-TCCATTCCATTCAAATACACTCCTTG-T,TCCAAATCCACTCCATG *
14814998-CT-C 12703069-CT-C 10×T*
16184000-A-G 14072120-A-G **
16004114-G-A 13892234-G-A **
11026019-A-ATCC **
11026021-T-TCG **
16354581-G-A 14242701-G-A **
10896146-C-T **
13486572-A-T 11330896-A-T A15571 **
10657569-C-T **
10927464-T-C **
56850974-TGC-T **
10657590-C-T **
10789911-C-T **
15658165-T-G 13546285-T-G **
56850973-C-G **
16392805-T-C 14280925-T-C **
56677994-G-A **
10769936-C-A **
10841999-C-T **
10868076-TTCCCG-T **
15060805-G-A 12948897-G-A **
9610036-TTG-T 9772427-TTG-T IR3_Prx **
11026018-C-T **
10978153-C-T **
14446471-C-A 12325744-C-A **
10949538-C-CAT **
11013363-C-T **
11013369-T-A **
18965991-C-CTTCG 16854111-C-CTTCG **
10965347-C-A **
10769437-T-C **
17347433-A-G 15235553-A-G **
10828181-C-G **
10925471-T-C **
10817922-C-CACCAT **
10817929-C-G **
10817934-C-T **
56728203-T-A **
10949540-C-CCAT **
2738377-C-A 2870336-C-A **
5200314-A-G 5332273-A-G **
8425684-A-G 8557643-A-G **
10668866-ACATTC-A **
10796560-G-A **
16869576-C-T 14757696-C-T **
10896127-A-T **
16754963-G-A 14643083-G-A **
27862535-TGAGAGA-T 25716388-TGAGAGA-T P1_Y2 22×GA**
19600509-G-T 17488629-G-T P5_Prx **
16562782-T-TAAA 14450902-T-TAAA 18×A**
5200096-T-G 5332055-T-G **
17284562-G-T 15172682-G-T **
10783788-C-G **
13486565-G-C 11330889-G-C **
14900672-G-TTT 12788739-G-TTT **
15650810-A-C 13538930-A-C **
10821210-CA-T **
10044752-C-A 10207143-C-A **
10662333-T-G **
10665424-C-A **
10665434-C-A **
10686428-A-T **
10692966-C-T **
10744953-C-A **
10745507-G-A **
10752955-T-C **
10760960-T-G **
11669474-C-A **
10784990-C-CCACTT **
10785008-T-C **
10797485-T-C **
10821214-G-C **
9856122-A-T 10018513-A-T **
10830089-C-T **
10840543-A-T **
10868030-C-CT **
10868045-A-T **
10868055-ATTCCC-A **
10868068-C-G **
10874009-C-A **
10883895-C-CCCATTCCATT **
13692788-TTGAAA-T 11537112-TTGAAA-T **
13460415-T-G 11304739-T-G **
13426132-AT-A 11270456-AT-A **
10965345-A-T **
10978148-T-C **
11005353-C-A **
11669918-G-A **
9126651-G-T **
15569669-A-G 13457789-A-G **
4103583-GA-G 4235542-GA-G **
15379760-G-T 13267880-G-T **
8556336-G-A 8688295-G-A **
15208845-CAAAAAAA-C 13096931-CAAAAAAA-C 23×A**
25617273-G-T 23471126-G-T P1_gr1 **
10792787-C-A **
11004773-G-T **
10755723-A-C **
14875592-GTTTTTT-G 12763662-GTTTTTT-G 28×T**
14510270-C-A 12398475-C-A **
15592550-C-CAA 13480670-C-CAA 22×A**
17459519-T-A 15347639-T-A **
14451916-C-T 12331189-C-T **
14451913-C-A 12331186-C-A **
14451901-G-C 12331174-G-C **
5241887-G-T 5373846-G-T **
13855305-AGGAAT-A 11734599-AGGAAT-A **
7013670-C-A 7145629-C-A **
8748618-C-A 8880577-C-A **
8690253-T-A 8822212-T-A **
8690249-T-A 8822208-T-A **
13966227-G-T 11845521-G-T **
7473929-G-T 7605888-G-T IR1_L **
7256023-T-C 7387982-T-C **
14045471-A-C 11924765-A-C **
5422209-C-T 5554168-C-T **
14200459-C-A 12079753-C-A **
6720723-C-A 6852682-C-A **
6286879-A-T 6418838-A-T IR3_Dst **
5927234-A-G 6059193-A-G **
5677693-C-A 5809652-C-A **
5629491-G-T 5761450-G-T **
10922226-A-T **
11025985-T-C **
10755718-A-T **
11013880-C-A **
10761194-C-T **
10828171-C-G **
7869666-ATT-A 8001625-ATT-A 14×T**
7032333-ATTT-A 7164292-ATTT-A 22×T**
10657554-G-C **
10657584-G-C **
10657585-T-C **
10657605-C-A **
15239181-G-. 13127267-C-G **
10928875-C-A **
10868036-T-C **
10929852-G-A **
11013878-A-G **
11013885-C-T **
11019406-G-A **
10989188-T-A **
13643028-G-T 11487352-G-T **
13643042-A-C 11487366-A-C **
13457699-T-TA 11302023-T-TA **
10928849-C-T **
10928853-C-G **
10928861-T-G **
10928864-C-A **
11025984-T-A **
11025995-C-T **
10775889-C-A **
10755717-T-C **
10928882-T-G **
10761192-A-T **
11019370-G-A **
10951717-CTCCAT-C **
56728209-A-T **
56845099-C-T **
13898366-CA-C 11777660-CA-C 15×A**
4611471-T-C 4743430-T-C **
5728904-CAG-C 5860863-CAG-C 12×AG**
13460422-T-C 11304746-T-C **
13460452-C-T 11304776-C-T **
15507783-G-T 13395903-G-T 25×T**
26248920-T-TAA 24102773-T-TAA P1_Y1 15×A**
13476314-C-T 11320638-C-T **
14451910-A-G 12331183-A-G **
21087398-AC-A 18925512-AC-A **
59026041-TTC-T 56879894-TTC-T **
59033283-G-C 56887136-G-C **
6891764-G-GT 7023723-G-GT 10×T**
11019360-T-A **
23123237-CA-C 20961351-CA-C 9×A**
14045455-G-GA 11924749-G-GA S16218 9×A**
58876790-C-A 56714081-G-T **
28687517-T-C 26541370-T-C **
28536780-C-A 26390633-C-A **
27967321-C-A 25821174-C-A P1_Y2 **
13486584-C-G 11330908-C-G A15572 **
19200940-CAGAG-C 17089060-CAGAG-C 10×AG**
27714761-G-T 25568614-G-T P1_Y2 **
26248937-C-A 24102790-C-A P1_Y1 **
24148152-A-G 22002005-A-G P3_b1 **
21780389-A-C **
23298737-G-T 21136851-G-T **
11019356-C-T **
10928892-C-T **
10775902-T-G **
13426132-A-G 11270456-A-G **
10947628-AT-A **
19021512-T-G 16909632-T-G **
56714075-T-A **
56714079-A-C **
10841996-C-A **
56714128-G-C **
11025997-C-CCATTA **
10850552-GTCCATTCCAT-G **
21142759-A-C 18980873-A-C **
10817912-C-T **
13223760-A-C 11068084-A-C **
10947625-T-TC **
10947644-T-A **
10947621-C-T **
20749552-G-T 18587666-G-T P4_Prx **
10922399-C-A **
20749542-C-A 18587656-C-A P4_Prx **
20749522-G-T 18587636-G-T P4_Prx **
6734680-CTTTTTT-C 6866639-CTTTTTT-C 21×T**
20749515-C-A 18587629-C-A P4_Prx **
20749510-C-A 18587624-C-A P4_Prx **
20379561-G-T 18217675-G-T P5_Dst **
20749484-C-A 18587598-C-A P4_Prx **
56873061-C-T **
20749500-G-T 18587614-G-T P4_Prx **
21653598-TA-T 19491712-TA-T **
21661653-T-C 19499767-T-C **
6434921-T-TAA 6566880-T-TAA 20×A**
21679310-T-C 19517424-T-C **
22743397-T-C 20581511-T-C **
10847461-C-G **
20215945-T-C 18054059-T-C P5_Dst **
21006510-AC-A 18844624-AC-A P4_Dst **
10760980-G-T **
10821814-T-C **
10821816-T-C **
10868051-G-C **
10755706-C-G **
10767812-T-A **
10767822-T-A **
15352141-T-TA 13240260-T-TA 13×A**
22008452-C-A 19846566-C-A **
10922202-T-A **
11034862-G-C **
13692798-A-T 11537122-A-T **
10790178-C-A **
21824971-A-G 19663085-A-G **
10755699-CACTAT-C **
10657609-C-G **
10657616-C-A **
10657617-T-A **
10796157-C-T **
17951718-G-A 15839838-G-A ***
56847577-A-G ***
19513578-ATTTTTTT-A,ATTT 17401698-ATTTTTTT-A,ATTT 20×T***
19006136-CAA-C,CA 16894256-CAA-C,CA 21×A***
56839939-G-A ***
23030131-C-A 20868245-C-A ***
17175263-G-A 15063383-G-A ***
28775769-C-A 26629622-C-A ***
16869871-T-C 14757991-T-C ***
23770839-G-A 21608953-G-A ***
13804131-G-T 11683425-G-T ***
23136211-C-A 20974325-C-A ***
23263317-CTTT-C,CTTTT 21101431-CTTT-C,CTTTT 13×T***
21407146-A-G 19245260-A-G ***
16237221-ATTT-A,AT 14125341-ATTT-A,AT 16×T***
21690909-CAA-C,CAAA 19529023-CAA-C,CAAA 14×A***
22065466-C-A 19903580-C-A ***
14515244-T-C 12403449-T-C ***
15085703-T-C 12973793-T-C ***
16711309-G-T 14599429-G-T ***
13454851-C-T 11299175-C-T ***
11017688-G-T ***
10932611-T-A ***
16908451-TAAAA-T 14796571-TAAAA-T 21×A***
14283208-C-A 12162502-C-A ***
10801531-T-C ***
21373632-C-A 19211746-C-A ***
10932590-C-T ***
10932599-C-G ***
16435939-ATTT-A 14324059-ATTT-A 16×T***
18491626-CT-C,CTT 16379746-CT-C,CTT P6_Dst 15×T***
13489483-C-A 11333807-C-A ***
56850097-A-C ***
56850100-C-T ***
10935504-G-A,C ***
22929693-GAA-G 20767807-GAA-G 14×A***
19050375-CTTT-C 16938495-CTTT-C 18×T***
21490373-ATT-A 19328487-ATT-A 15×T***
10932702-T-C ***
13643057-G-A 11487381-G-A ***
56847540-C-G ***
58834006-T-C 56756865-A-G ***
13489835-C-T 11334159-C-T ***
2739932-GT-G 2871891-GT-G 10×T***
17557167-CTT-C 15445287-CTT-C 12×T***
13487790-C-A 11332114-C-A ***
7567908-A-G 7699867-A-G ***
9518470-CAA-C 9680861-CAA-C 13×A***
13938928-T-TA 11818222-T-TA 8×A***
58982754-C-T 56836607-C-T ***
13643051-T-G 11487375-T-G ***
16431229-CAA-C,CA 14319349-CAA-C,CA 15×A***
13471810-T-TC 11316134-T-TC ***
16599739-TA-T 14487859-TA-T 10×A***
13487820-T-C 11332144-T-C ***
13487758-C-CAT 11332082-C-CAT ***
10761163-T-C ***
10925511-T-A ***
13677809-G-T 11522133-G-T ***
10977058-C-T ***
10955370-C-G ***
6931489-A-G 7063448-A-G ***
10692664-G-A,C ***
16505918-T-TAA 14394038-T-TAA 12×A***
17187634-CAA-C,CA 15075754-CAA-C,CA 15×A***
10916376-G-C ***
2798710-ATTT-A,ATTTT 2930669-ATTT-A,ATTTT 20×T***
2834304-AGAAATAAAG-A 2966263-AGAAATAAAG-A ***
6980089-CAAAAA-C 7112048-CAAAAA-C 17×A***
11018060-C-A ***
8217491-T-C 8349450-T-C ***
8810786-T-C 8942745-T-C ***
9215087-G-A 9377478-G-A ***
9869992-G-A 10032383-G-A ***
10773517-T-C ***
10928233-CT-C ***
10929316-C-A ***
10916363-T-A ***
9400643-AT-A,ATT 9563034-AT-A,ATT 13×T***
15801525-CT-C 13689645-CT-C 8×T***
9991637-CT-C,CTT 10154028-CT-C,CTT 20×T***
10796128-G-T ***
8088173-CAAA-C,CAA 8220132-CAAA-C,CAA 16×A***
10663210-G-C,T ***
16018318-C-CA 13906438-C-CA 8×A***
2844149-GTTTT-G 2976108-GTTTT-G 16×T***
15336706-TC-T 13224824-TC-T ***
13643070-G-A 11487394-G-A ***
13453324-C-T 11297648-C-T ***
10773386-C-A ***
10925551-C-G ***
10780407-G-C ***
10780409-T-G ***
22091898-C-CT 19930012-C-CT 10×T***
10825515-C-T ***
21750870-G-T ***
13453326-T-A 11297650-T-A ***
13473-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 394167866032070274626973056
Used in age calculations866032070274626973056
Counts of SNPs00
Variant counts last updated 2018-06-18 21:27:51.



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