Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z198 > CTS4188 > S14445 > BY3252 > BY103776

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
463053
22268375-G-T 20106489-G-T DYZ19 A*
20788173-G-A 18626287-G-A P4_Prx A*
20705804-A-C 18543918-A-C P4_Prx A*
26165370-C-T 24019223-C-T P1_Y1 A*
22460678-G-T 20298792-G-T BY220588 DYZ19 +
14265062-A-G 12144356-A-G BY94432 YY+
22440758-A-C 20278872-A-C BY218893 DYZ19 +
22446200-C-G 20284314-C-G BY219787 DYZ19 +
18613581-C-A 16501701-C-A BY122605 YY+
15897493-GA-G 13785613-GA-G +
21487154-G-T 19325268-G-T BY133319 YY+
21437724-G-C 19275838-G-C BY132911 YY+
8435548-G-A 8567507-G-A BY72724 YY+
2719458-G-A 2851417-G-A BY55994 YY+
8070639-C-G 8202598-C-G BY69745 YY+
17710462-C-T 15598582-C-T BY116843 YY+
9058342-A-G 9220733-A-G BY77783 Y+
28786840-T-C 26640693-T-C BY151280 +
7216036-CAG-C 7347995-CAG-C +
18788007-A-G 16676127-A-G BY123915 YY+
19201467-G-C 17089587-G-C BY127185 YY+
13646013-G-A 11490337-G-A BY86874 +
16513543-T-C 14401663-T-C YFS232174 Y41518 YY+
19200820-C-T 17088940-C-T BY127179 YY+
6913142-G-A 7045101-G-A YY+
19500308-C-A 17388428-C-A BY129597 YY+
7836408-G-A 7968367-G-A BY68075 YY+
7474374-AAGAGAG-A 7606333-AAGAGAG-A IR1_L 21×AG*
22432597-G-T 20270711-G-T DYZ19 *
10973909-A-C *
10973922-C-G *
13683282-A-AGAATG 11527606-A-AGAATG 7×GAATG*
17047880-ATT-A,AT 14936000-ATT-A,AT 16×T*
22230826-T-A 20068940-T-A DYZ19 *
7436786-C-A 7568745-C-A **
8970659-C-T 9133050-C-T **
8290689-C-T 8422648-C-T FT4875 **
8077303-C-A 8209262-C-A **
7852430-C-A 7984389-C-A **
8062412-G-T 8194371-G-T **
8019159-A-G 8151118-A-G **
8810215-G-A 8942174-G-A **
58912904-T-A 56677967-A-T **
9094588-C-A 9256979-C-A **
10771283-C-A **
10848817-CATTGT-C **
10838708-T-A **
10822394-T-C **
10808513-C-A **
10798197-TCATTTCACC-T **
10798110-A-C **
10798109-A-C **
10783720-G-T **
10778836-C-T **
10773298-T-G **
10769030-T-C **
9601658-A-T 9764049-A-T IR3_Prx **
10768984-A-C **
10768983-C-T **
10666006-C-T **
10665452-C-A **
10645935-G-A **
10018358-C-A 10180749-C-A **
9996012-C-A 10158403-C-A **
9961236-A-T 10123627-A-T **
9892716-A-G 10055107-A-G **
9889496-G-A 10051887-G-A **
9764148-A-C 9926539-A-C **
7160827-C-A 7292786-C-A **
6694224-C-A 6826183-C-A **
7081460-A-C 7213419-A-C **
3688402-C-A 3820361-C-A **
2881224-C-A 3013183-C-A **
2767748-C-A 2899707-C-A **
2682695-C-A 2814654-C-A **
2675647-G-T 2807606-G-T **
10912636-G-T **
10033215-C-A 10195606-C-A **
15190139-T-G 13078225-T-G **
7717419-C-A 7849378-C-A **
58912908-G-C 56677963-C-G **
3628399-G-T 3760358-G-T **
13298656-T-C 11142980-T-C **
19721425-C-A 17609545-C-A P5_Prx **
10813561-C-G **
22011194-C-A 19849308-C-A **
18462685-G-T 16350805-G-T P6_Dst **
9908408-G-T 10070799-G-T **
10838704-C-T **
10838703-T-A **
3249514-C-A 3381473-C-A **
3846938-C-A 3978897-C-A **
7081453-A-G 7213412-A-G **
6454148-C-A 6586107-C-A **
7081446-A-G 7213405-A-G **
6972540-C-A 7104499-C-A **
6773675-G-A 6905634-G-A **
6751408-T-C 6883367-T-C **
10864917-C-T **
6630679-T-C 6762638-T-C **
6583742-G-T 6715701-G-T **
6516263-A-G 6648222-A-G **
6310886-C-A 6442845-C-A IR3_Dst **
4327824-C-A 4459783-C-A **
6265036-A-ACT 6396995-A-ACT IR3_Dst **
6234305-A-AC 6366264-A-AC IR3_Dst **
6234248-G-C 6366207-G-C IR3_Dst **
6173223-T-G 6305182-T-G IR3_Dst **
6173204-A-C 6305163-A-C IR3_Dst **
6144627-C-A 6276586-C-A IR3_Dst **
5755886-TG-T 5887845-TG-T **
5303370-TTTG-T 5435329-TTTG-T **
4856623-A-G 4988582-A-G **
10849288-A-G **
14107082-A-C 11986376-A-C **
10872345-C-A **
21405805-G-A 19243919-G-A **
22660416-C-A 20498530-C-A **
22548115-T-C 20386229-T-C **
22515150-G-C 20353264-G-C **
22446189-T-G 20284303-T-G DYZ19 **
22446188-T-G 20284302-T-G DYZ19 **
22240691-T-A 20078805-T-A DYZ19 **
21976260-T-G 19814374-T-G **
21762523-C-A 19600637-C-A **
21201682-G-A 19039796-G-A **
22893518-T-C 20731632-T-C **
21182503-T-G 19020617-T-G **
21182498-T-C 19020612-T-C **
21103176-C-A 18941290-C-A **
20305551-A-AG 18143665-A-AG P5_Dst **
19872161-G-T 17760281-G-T P5_Prx **
19566994-C-T 17455114-C-T **
19306652-C-A 17194772-C-A **
19271488-G-A 17159608-G-A **
22814912-C-A 20653026-C-A **
23433617-C-A 21271731-C-A **
19021580-C-A 16909700-C-A **
26073119-T-A 23926972-T-A P1_Y1 **
56823670-C-A **
56677997-T-TG **
28691375-G-T 26545228-G-T **
28639884-C-A 26493737-C-A **
28611274-T-C 26465127-T-C **
28554841-AC-A 26408694-AC-A **
28542033-A-T 26395886-A-T **
26264780-C-A 24118633-C-A P1_Y1 **
24841483-G-A 22695336-G-A P3_b2 **
23466236-G-T 21304350-G-T **
24511287-A-C 22365140-A-C **
24406635-A-T 22260488-A-T **
24342389-G-T 22196242-G-T P3_t1 **
24308708-C-A 22162561-C-A P3_t1 **
24016616-A-AT 21870469-A-AT **
21750576-T-C **
23827690-C-A 21665804-C-A **
23745067-G-T 21583181-G-T **
23516841-G-T 21354955-G-T **
19198258-A-G 17086378-A-G **
18949789-C-A 16837909-C-A **
10899117-C-T **
14067357-C-A 11946651-C-A **
15158636-TA-T 13046722-TA-T **
14714621-G-A 12602688-G-A **
14668984-G-T 12557050-G-T **
14579527-C-A 12467727-C-A **
14558671-G-T 12446872-G-T **
14383845-G-T 12263141-G-T **
14359803-G-T 12239098-G-T **
17773617-C-A 15661737-C-A **
11673316-C-A **
15312479-C-A 13200584-C-A **
11646390-C-A **
13474535-T-A 11318859-T-A **
13304386-AGGTTTTCTT-A 11148710-AGGTTTTCTT-A **
11016284-C-A **
11005874-C-A **
10941051-C-A **
10936789-A-C **
10936777-C-CACTTT **
15172010-G-A 13060096-G-A **
15320679-AG-A 13208797-AG-A **
18636838-C-T 16524958-C-T **
17360388-A-G 15248508-A-G **
18614365-C-A 16502485-C-A **
18317488-T-G 16205608-T-G P6_Prx **
18280405-C-CG 16168525-C-CG P6_Prx **
18055116-C-A 15943236-C-A **
18024471-T-G 15912591-T-G **
18005295-C-T 15893415-C-T P7_Gap **
17823855-C-T 15711975-C-T **
17489834-T-C 15377954-T-C **
17146438-G-A 15034558-G-A **
15769041-T-G 13657161-T-G **
16973340-C-A 14861460-C-A **
16904585-C-A 14792705-C-A **
16821886-C-A 14710006-C-A **
16508745-C-A 14396865-C-A **
16504860-C-A 14392980-C-A **
16309465-A-C 14197585-A-C **
16309460-T-C 14197580-T-C **
16051292-C-A 13939412-C-A **
16033832-C-A 13921952-C-A **
10772081-C-A **
7048466-G-T 7180425-G-T **
19078988-G-T 16967108-G-T **
13818072-G-A 11697366-G-A **
10946606-C-T **
23005486-C-A 20843600-C-A **
10943126-G-C **
56763519-T-G **
21946945-ATTT-A 19785059-ATTT-A 15×T**
19963796-AC-A 17851916-AC-A P5_Prx **
8575956-ATTTTTTT-A 8707915-ATTTTTTT-A 28×T**
22185855-CTTTTTTT-C 20023969-CTTTTTTT-C 25×T**
10766485-C-T **
28229311-C-A 26083164-C-A P1_b4 **
9141874-C-A 9304265-C-A **
21476507-C-A 19314621-C-A **
8970836-G-T 9133227-G-T **
10849788-C-A **
16060677-C-A 13948797-C-A **
13466329-G-A 11310653-G-A **
10901598-AATCCT-A **
10943150-A-T **
10921899-G-T **
16860800-G-T 14748920-G-T **
13486787-G-T 11331111-G-T **
11017703-C-A **
28500262-C-A 26354115-C-A **
21694965-C-A 19533079-C-A **
7723704-C-A 7855663-C-A **
11037102-T-A **
10804339-C-T **
10804334-C-T **
10798108-G-T **
21182470-A-G 19020584-A-G **
10798121-T-A **
13475503-C-A 11319827-C-A **
10813574-C-A **
22171594-G-T 20009708-G-T **
11674388-G-T **
22295295-C-T 20133409-C-T DYZ19 **
13474516-G-T 11318840-G-T **
13474507-C-T 11318831-C-T **
13474498-C-A 11318822-C-A **
13474485-G-C 11318809-G-C **
19129534-G-T 17017654-G-T **
9564476-C-A 9726867-C-A IR3_Prx **
10797787-CTCTCT-C **
10778821-C-T **
15201423-C-T 13089509-C-T M1106 CTS3812 **
22893523-A-G 20731637-A-G **
13474515-G-A 11318839-G-A **
21895613-C-T 19733727-C-T **
13141222-C-G 10630708-C-G **
16860792-G-A 14748912-G-A **
3990683-GA-G 4122642-GA-G 9×A**
59026192-C-T 56880045-C-T **
58989357-G-T 56843210-G-T **
13213967-T-G 11058291-T-G **
13474491-G-A 11318815-G-A **
14101351-T-C 11980645-T-C **
13627154-C-T 11471478-C-T PF4532 **
3301260-C-T 3433219-C-T FT56801 **
3126786-A-G 3258745-A-G Z8495 **
3126754-T-C 3258713-T-C **
10030730-C-A 10193121-C-A **
6402338-T-A 6534297-T-A **
58833948-CA-C 56756921-GT-G **
6402340-G-C 6534299-G-C **
13475526-A-G 11319850-A-G **
13466322-C-A 11310646-C-A **
10901613-A-T **
14747499-G-A 12635568-G-A **
14203262-T-TA 12082556-T-TA 9×A**
19447530-C-A 17335650-C-A **
13700650-G-C 11544974-G-C **
10992589-C-T **
10992588-A-T **
10985436-A-T **
23196645-C-A 21034759-C-A PH5360 **
22055418-C-A 19893532-C-A **
10961435-C-A **
14531954-T-G 12420155-T-G **
10630675-A-G **
23041198-GAA-G 20879312-GAA-G 34×A**
13705539-C-A 11549863-C-A **
10901644-T-C **
10901629-T-G **
10901624-T-C **
10901614-C-T **
11037186-T-A **
15967503-CTTTT-C 13855623-CTTTT-C 14×T**
13474536-G-A 11318860-G-A **
21625324-C-A 19463438-C-A **
20884102-A-AG 18722216-A-AG P4_Dst **
10946584-CTGTGC-G **
9111001-G-T **
10768979-G-T **
6479106-C-A 6611065-C-A **
23036524-C-A 20874638-C-A **
8056150-G-T 8188109-G-T **
15180244-G-T 13068330-G-T **
14093417-C-A 11972711-C-A **
21182494-C-G 19020608-C-G **
18738211-C-A 16626331-C-A **
8230430-GTA-G 8362389-GTA-G **
11038147-T-G **
18412323-C-A 16300443-C-A P6_Gap **
4371004-C-A 4502963-C-A **
10899816-G-A **
9700867-C-A 9863258-C-A IR3_Prx **
4957619-A-G 5089578-A-G **
18731479-C-A 16619599-C-A **
23167770-C-A 21005884-C-A **
10763612-T-A **
10689653-T-G **
22022897-C-A 19861011-C-A **
11027883-G-T **
21182486-T-C 19020600-T-C **
26073064-G-GGC 23926917-G-GGC P1_Y1 **
10909664-C-A **
17498959-C-A 15387079-C-A **
24421111-C-A 22274964-C-A **
7103363-C-A 7235322-C-A **
10879465-T-G **
10961400-C-A **
10763621-C-T **
28478405-C-A 26332258-C-A **
16171338-C-A 14059458-C-A **
8169355-C-A 8301314-C-A **
21285380-C-A 19123494-C-A **
24406634-TA-T 22260487-TA-T **
19799933-C-A 17688053-C-A P5_Prx **
20943519-TG-T 18781633-TG-T P4_Dst **
10813571-A-T **
10763623-C-T **
17181529-G-A 15069649-G-A **
56855357-C-G **
10689650-T-A **
11025962-C-A **
6233703-G-T 6365662-G-T IR3_Dst **
27570957-G-T 25424810-G-T P1_Y2 **
13475505-T-G 11319829-T-G **
24841468-T-A 22695321-T-A P3_b2 **
14311611-C-A 12190905-C-A **
11037100-C-A **
10946566-C-T **
6233726-T-A 6365685-T-A IR3_Dst 13×CA**
13475508-A-T 11319832-A-T **
13475511-C-A 11319835-C-A **
13818097-G-T 11697391-G-T ***
10866348-A-C ***
22776653-TAA-T 20614767-TAA-T 12×A***
19449428-GA-G,GAA 17337548-GA-G,GAA 23×A***
10653492-T-A,C ***
10899901-C-A ***
10653466-CCAATA-C,CCGTTC ***
10849670-C-T ***
10880973-C-T ***
13474540-C-A 11318864-C-A ***
2912627-C-A 3044586-C-A 8×T***
22917687-CTT-C 20755801-CTT-C 12×T***
10653912-TCC-T ***
21414989-G-GA 19253103-G-GA 10×A***
6981508-CA-C 7113467-CA-C 9×A***
16786213-CTTTTTTTT-C 14674333-CTTTTTTTT-C 22×T***
23381991-C-A 21220105-C-A ***
7195356-C-A 7327315-C-A ***
24475111-G-T 22328964-G-T ***
10803382-GTTCCA-G ***
13316174-C-T 11160498-C-T ***
10797909-T-A,C ***
10755561-C-A ***
14900644-AT-A,ATT 12788711-AT-A,ATT 27×T***
10960715-T-C ***
10673980-T-C ***
10795548-C-A ***
14937028-A-AT 12825093-A-AT 9×T***
10661353-A-ATTCCATCCCC,T ***
4302141-C-A 4434100-C-A ***
10837475-C-A ***
21737974-GA-G,GAA 19576088-GA-G,GAA 12×A***
17426011-CCTTTTCTTTT-C,CCTTTT 15314131-CCTTTTCTTTT-C,CCTTTT 11×CTTTT***
13624352-G-GTATA 11468676-G-GTATA 11×TA***
13809106-C-G 11688400-C-G ***
23617826-T-C 21455940-T-C ***
21731884-CCCCAAGTTTAATA-C 19569998-CCCCAAGTTTAATA-C ***
10840871-G-A ***
6458072-ATT-A 6590031-ATT-A 13×T***
17004618-CAA-C,CA 14892738-CAA-C,CA 14×A***
4703239-AGAAGGC-A 4835198-AGAAGGC-A ***
24884030-A-AT 22737883-A-AT g1 13×T***
7032333-ATTTTTT-A 7164292-ATTTTTT-A 22×T***
10927464-T-C ***
15677933-CAAAAAAA-C 13566053-CAAAAAAA-C 21×A***
15412464-C-CA 13300584-C-CA 10×A***
10987433-C-CG ***
21549183-GTT-G,GT 19387297-GTT-G,GT 17×T***
7450372-C-A 7582331-C-A IR1_L ***
16575221-C-G 14463341-C-G ***
8012517-G-T 8144476-G-T ***
17944645-TTG-T,TT 15832765-TTG-T,TT ***
13818098-G-TC 11697392-G-TC ***
10785670-C-A ***
13818091-AC-A 11697385-AC-A ***
17632570-G-GT,GTT 15520690-G-GT,GTT 22×T***
15789257-A-G 13677377-A-G ***
11033818-A-C,T ***
15710416-C-A 13598536-C-A ***
2909373-C-CT 3041332-C-CT 9×T***
8874970-CT-C,CTT 9006929-CT-C,CTT 17×T***
9991637-CTTTT-C 10154028-CTTTT-C 20×T***
14251900-G-A 12131194-G-A ***
9798063-G-GTT 9960454-G-GTT 17×T***
13488961-C-G,T 11333285-C-G,T ***
10655115-A-C ***
15581093-CTT-C,CT 13469213-CTT-C,CT 16×T***
15199356-CAGACATATTAGAATTTT-C 13087442-CAGACATATTAGAATTTT-C ***
13463920-A-C,T 11308244-A-C,T ***
10839917-C-T ***
10849667-A-C ***
10989520-T-A,C ***
10987429-CC-C,CT ***
10851849-A-G ***
14716667-G-T 12604735-G-T ***
17374395-C-T 15262515-C-T ***
18559727-CA-C 16447847-CA-C 10×A***
10653461-C-T ***
8673077-C-A 8805036-C-A ***
10671028-T-C,G ***
13799525-G-T 11678819-G-T ***
18593243-C-A 16481363-C-A ***
13839811-GAATGA-G,GAATGG 11719105-GAATGA-G,GAATGG ***
10827044-T-C ***
6867534-C-T 6999493-C-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 463053907500573538427278654
Used in age calculations907500573538427278654
Counts of SNPs1516
Variant counts last updated 2019-08-26 23:03:42.



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