Tree Position

A0-T-YP2191 > P305 > L413/PF1409/V31 > M168/PF1416 > P143 > M89/PF2746 > F1329/M3658 > F929 > IJK > IJ > M170 > Z2647 > L460 > M436 > M223 > Y3721 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
171435
6262638-G-GCA 6394597-G-GCA IR3_Dst 11×CAA*
20643241-C-CAT 18481355-C-CAT P4_Prx 8×ATA*
20048267-G-A 17936387-G-A P5_Prx A*
28808602-G-C 26662455-G-C A*
20019111-C-T 17907231-C-T P5_Prx A*
19870800-A-G 17758920-A-G P5_Prx A*
26025386-G-C 23879239-G-C P1_Y1 A*
28813016-G-C 26666869-G-C A*
26231556-G-T 24085409-G-T P1_Y1 A*
13471850-G-A 11316174-G-A A*
13471848-C-G 11316172-C-G A*
17989792-C-T 15877912-C-T BY23079 P7_Prx YA*
9964105-C-G 10126496-C-G Y+
24473861-G-A 22327714-G-A BY150216 Y+
11017994-A-G BY41361 +
16587315-G-A 14475435-G-A BY108822 YY+
22447026-T-C 20285140-T-C DYZ19 +
18083146-C-CTG 15971266-C-CTG 11×TG*
9640889-TTGTGTGTG-T 9803280-TTGTGTGTG-T IR3_Prx 22×TG*
5629773-C-T 5761732-C-T **
5880849-C-A 6012808-C-A **
5895182-T-G 6027141-T-G **
5911491-C-A 6043450-C-A **
5998705-C-T 6130664-C-T **
6095328-C-A 6227287-C-A **
6280408-C-A 6412367-C-A IR3_Dst **
6392632-C-A 6524591-C-A BY60114 **
5876483-C-T 6008442-C-T **
30095-C-A **
5516263-A-G 5648222-A-G **
4567871-C-T 4699830-C-T **
3899337-C-A 4031296-C-A **
4041247-C-A 4173206-C-A **
4100981-T-C 4232940-T-C **
4306307-G-T 4438266-G-T **
4394652-G-T 4526611-G-T **
4396474-G-T 4528433-G-T **
4554578-C-A 4686537-C-A **
4669487-C-A 4801446-C-A **
5262921-T-C 5394880-T-C **
4672315-A-G 4804274-A-G **
4958955-G-T 5090914-G-T **
5007689-C-CA 5139648-C-CA 22×A**
5068583-G-T 5200542-G-T **
5189610-G-T 5321569-G-T **
6581692-AT-A 6713651-AT-A **
5251585-C-A 5383544-C-A **
6444836-C-CTATATA 6576795-C-CTATATA 12×TA**
7258631-C-A 7390590-C-A **
6614514-G-T 6746473-G-T **
9713339-C-G 9875730-C-G IR3_Prx **
10779203-C-A **
10778155-T-G **
10778145-A-C **
10762078-A-T **
10760762-C-A **
10759010-A-C **
10754191-A-T **
10750849-TACTTG-T **
10682588-A-T **
10669612-G-T **
10668227-C-A **
10663075-A-T **
9965934-C-A 10128325-C-A **
9822921-A-G 9985312-A-G **
9143256-A-C 9305647-A-C **
6807076-C-A 6939035-C-A **
7381272-A-C 7513231-A-C **
6999547-T-C 7131506-T-C **
7054143-G-T 7186102-G-T **
7140933-A-C 7272892-A-C **
7238288-C-A 7370247-C-A **
7243259-A-C 7375218-A-C **
3863198-C-A 3995157-C-A **
7391162-T-C 7523121-T-C **
8761507-C-G 8893466-C-G **
7451254-G-GA 7583213-G-GA IR1_L **
7699363-C-G 7831322-C-G **
7861625-C-A 7993584-C-A **
8078800-C-A 8210759-C-A **
8124912-A-C 8256871-A-C **
8710060-CAGTCA-C 8842019-CAGTCA-C **
3863245-T-TAA 3995204-T-TAA 15×A**
3200711-T-C 3332670-T-C **
3791354-A-G 3923313-A-G **
10773716-T-A **
20534077-TCG-T 18372191-TCG-T P5_Dst **
11011142-T-A **
10974744-A-T **
18423887-CAAA-C 16312007-CAAA-C P6_Gap 15×A**
10993212-C-G **
13734395-C-A 11578719-C-A **
10912385-C-A **
26074532-AT-A 23928385-AT-A P1_Y1 **
23789377-C-A 21627491-C-A **
3696985-G-T 3828944-G-T **
10792309-A-C **
21888403-C-A 19726517-C-A **
14366469-C-A 12245764-C-A **
16490010-C-A 14378130-C-A **
10922275-T-C **
11030120-A-AG **
13700583-C-T 11544907-C-T **
9034499-C-A 9196890-C-A **
17802194-A-AG 15690314-A-AG 8×AAG**
10987694-C-A **
8153597-C-A 8285556-C-A **
2773713-G-T 2905672-G-T **
19251440-T-G 17139560-T-G **
6966-G-T **
10889800-C-A **
4236471-CAAA-C 4368430-CAAA-C 17×A**
10777933-C-A **
5923786-C-A 6055745-C-A **
15171447-T-C 13059533-T-C **
10808974-ACCCC-A **
27847758-A-ATGTG 25701611-A-ATGTG P1_Y2 9×TG**
16045290-C-A 13933410-C-A **
11030122-CCCATTA-C **
3790185-C-A 3922144-C-A **
28758167-C-A 26612020-C-A **
3755402-T-A 3887361-T-A **
3677761-G-A 3809720-G-A **
3676962-G-T 3808921-G-T **
3640681-TCTCCTTCC-T 3772640-TCTCCTTCC-T **
3229175-G-C 3361134-G-C **
3217648-C-A 3349607-C-A **
10804911-A-T **
3113531-G-T 3245490-G-T **
3061667-ATG-A 3193626-ATG-A **
2999690-A-C 3131649-A-C **
28806458-G-C 26660311-G-C **
3279908-C-A 3411867-C-A **
17246383-G-T 15134503-G-T **
7423827-C-A 7555786-C-A **
19275290-C-A 17163410-C-A **
11030131-T-C **
28529858-C-A 26383711-C-A **
11030134-C-A **
10974767-C-CCATTT **
9465268-C-A 9627659-C-A **
10822155-C-A **
15202304-T-A 13090390-T-A **
10825628-A-T **
10747983-T-C **
11650516-C-A **
14345013-C-A 12224308-C-A **
15171479-T-C 13059565-T-C **
28806512-T-A 26660365-T-A **
10950368-A-G **
15452248-A-AC 13340368-A-AC **
4788839-C-A 4920798-C-A **
10792282-T-A **
10892242-CCTG-C **
10811264-C-T **
18305850-C-A 16193970-C-A P6_Prx **
21770152-C-A 19608266-C-A **
21268952-T-G 19107066-T-G **
20902304-A-AC 18740418-A-AC P4_Dst **
20249291-A-C 18087405-A-C P5_Dst **
20035052-AAC-A 17923172-AAC-A P5_Prx **
20035039-T-A 17923159-T-A P5_Prx **
19853776-A-T 17741896-A-T P5_Prx **
19547629-C-A 17435749-C-A **
19522829-C-A 17410949-C-A **
19088419-C-A 16976539-C-A **
18963904-G-C 16852024-G-C **
18872031-TTTCCTTCCTTCCTTCC-T 16760151-TTTCCTTCCTTCCTTCC-T 12×TTCC**
18853459-A-G 16741579-A-G **
18539496-C-A 16427616-C-A **
18136086-C-A 16024206-C-A **
21991476-C-A 19829590-C-A **
17581934-C-A 15470054-C-A **
17155849-A-C 15043969-A-C **
17097342-T-C 14985462-T-C **
16813936-T-A 14702056-T-A **
16745015-C-A 14633135-C-A **
16622922-G-A 14511042-G-A **
16540365-G-T 14428485-G-T **
16054207-A-C 13942327-A-C **
15936841-C-A 13824961-C-A **
15420177-G-T 13308297-G-T **
15283121-A-C 13171220-A-C **
15232258-G-T 13120344-G-T **
15210930-T-C 13099016-T-C **
15202323-TAA-T 13090409-TAA-T **
21846708-T-C 19684822-T-C **
22050706-T-C 19888820-T-C **
15171480-G-A 13059566-G-A **
27527197-G-A 25381050-G-A P1_Y2 **
26806-C-A **
24326-C-A **
56851347-T-G **
56839770-T-A **
56838243-G-T **
56835933-CAA-C **
56746261-GA-G **
28806445-CAT-C 26660298-CAT-C **
28702563-C-A 26556416-C-A **
28574166-C-A 26428019-C-A **
28234312-C-A 26088165-C-A P1_b4 **
28091294-C-T 25945147-C-T P1_Y2 **
27967353-TATAGAGAGAG-T 25821206-TATAGAGAGAG-T P1_Y2 **
27887017-AAC-A 25740870-AAC-A P1_Y2 **
26060087-G-T 23913940-G-T P1_Y1 **
22149925-C-A 19988039-C-A **
23091742-C-T 20929856-C-T **
22170189-G-T 20008303-G-T **
22339314-A-T 20177428-A-T BY46351 DYZ19 **
22440051-G-A 20278165-G-A DYZ19 **
22510349-C-A 20348463-C-A DYZ19 **
22715166-A-T 20553280-A-T **
22811951-C-A 20650065-C-A **
23199833-C-A 21037947-C-A **
24472421-G-GTTTT 22326274-G-GTTTT 25×T**
23204477-C-A 21042591-C-A **
23321366-G-T 21159480-G-T **
21752930-C-A **
24071332-C-A 21925185-C-A P3_b1 **
24253693-C-A 22107546-C-A P3_b1 **
24406899-T-G 22260752-T-G **
15202317-A-AAC 13090403-A-AAC **
15171471-A-G 13059557-A-G **
10812417-C-A **
10965293-C-A **
11033324-T-A **
11030691-C-A **
11030395-C-T **
11030266-C-CGAA **
11030261-TTGT-G **
11015201-A-T **
11000631-C-A **
10999645-A-T **
10997140-C-CATTCA **
10993217-C-T **
10992217-A-T **
10990165-C-A **
10982411-C-A **
10978896-C-A **
10964798-A-T **
13253247-C-A 11097571-C-A **
10963145-A-T **
10948314-T-A **
10948308-T-C **
10928301-T-C **
10909703-A-T **
10909700-C-A **
14605775-A-C 12493977-A-C **
10882793-C-G **
10872837-C-A **
10841411-C-A **
10825644-T-G **
10825641-C-G **
10822351-C-T **
10815151-T-A **
11033336-A-T **
13290499-C-A 11134823-C-A **
15171466-G-C 13059552-G-C **
11671440-C-T **
15171436-T-C 13059522-T-C **
15171428-T-A 13059514-T-A **
15171426-C-T 13059512-C-T **
15116952-C-T 13005039-C-T **
15103490-G-T 12991578-G-T **
14739805-T-TG 12627873-T-TG **
14490359-C-A 12369628-C-A **
14472873-C-A 12352142-C-A **
12297437-G-GTATATATATATGTA **
14273932-C-A 12153226-C-A **
14183215-C-A 12062509-C-A **
14160437-G-T 12039731-G-T **
13929956-G-T 11809250-G-T **
13911298-C-T 11790592-C-T **
13711495-A-T 11555819-A-T **
13292351-C-A 11136675-C-A **
13453344-C-CTTG 11297668-C-CTTG **
13320155-T-G 11164479-T-G **
13323922-C-A 11168246-C-A **
13409309-C-A 11253633-C-A **
13453340-A-ACTG 11297664-A-ACTG **
13453341-T-TAC 11297665-T-TAC **
13453343-C-CGG 11297667-C-CGG **
13460951-A-G 11305275-A-G **
13711486-A-G 11555810-A-G **
13521917-A-AT 11366241-A-AT 10×T**
13696734-A-T 11541058-A-T **
13700589-G-A 11544913-G-A **
13700593-T-C 11544917-T-C **
13705523-A-ATCGAT 11549847-A-ATCGAT **
13711469-G-T 11555793-G-T **
26247617-C-A 24101470-C-A P1_Y1 **
27842251-G-T 25696104-G-T P1_Y2 **
10989134-CTCCAT-C **
13460923-C-T 11305247-C-T **
10770709-G-T **
11001784-C-T **
10992233-C-T **
16101996-C-CTTT 13990116-C-CTTT P8_Prx 19×T**
11037105-C-G **
10959491-C-G **
10959481-A-C **
10982179-T-C **
18801435-C-A 16689555-C-A **
5853532-G-T 5985491-G-T **
23167802-C-CT 21005916-C-CT 10×T**
10967502-C-A **
24267227-AC-A 22121080-AC-A P3_b1 **
13460921-T-C 11305245-T-C **
26100543-TTGG-T 23954396-TTGG-T P1_Y1 **
13460897-C-T 11305221-C-T **
10999874-C-A **
10999870-A-G **
10780689-T-C **
28806481-A-C 26660334-A-C **
10859981-C-T **
10859973-T-C **
10859968-T-A **
15171487-G-C 13059573-G-C **
10950363-A-G **
10950332-A-G **
10755364-C-T **
10899995-C-A **
16102056-G-T 13990176-G-T P8_Prx **
28808579-G-C 26662432-G-C **
8501583-CTCT-C 8633542-CTCT-C **
10014984-ATT-A 10177375-ATT-A 27×T**
10748063-T-G **
13734347-G-T 11578671-G-T **
10759162-T-A **
11001792-C-A **
10895897-ACTCAG-A **
10759171-G-C **
13734414-T-A 11578738-T-A **
13734375-C-A 11578699-C-A **
10802894-G-T **
5393259-A-G 5525218-A-G **
10851158-C-G **
11030110-T-A **
16931555-G-T 14819675-G-T **
13453348-C-G 11297672-C-G **
11036132-C-T **
5426390-CTTT-C 5558349-CTTT-C 17×T**
23293602-A-G 21131716-A-G **
15171425-G-A 13059511-G-A **
10026295-CTT-C 10188686-CTT-C 12×T**
22715166-AAG-A 20553280-AAG-A **
10759185-T-C **
56844881-A-G **
10964883-C-A **
10983997-T-C **
10992057-GATTAC-G **
7543837-C-A 7675796-C-A **
10982413-C-T **
10899968-T-C **
15320553-G-A 13208659-G-A **
10899991-G-C **
20501867-G-GT 18339981-G-GT P5_Dst **
10755393-TC-T **
14960241-G-GT 12848316-G-GT 9×T**
10992284-T-G **
2853510-A-G 2985469-A-G **
2853503-G-T 2985462-G-T **
20579298-C-A 18417412-C-A P5_Dst **
20579281-C-A 18417395-C-A P5_Dst **
10658591-G-T **
10956596-T-TTC **
10780571-A-T **
10768088-C-A **
11030257-G-C **
11030245-T-A **
10997518-A-G **
10997503-A-T **
17097302-G-T 14985422-G-T **
10934703-T-A **
13197820-G-GA 11042144-G-GA **
13460930-C-T 11305254-C-T **
23438879-CT-C 21276993-CT-C 21×T**
13460944-G-A 11305268-G-A **
58988482-G-A 56842335-G-A **
13255809-TG-T 11100133-TG-T 12×G**
58989836-G-T 56843689-G-T **
13460916-T-A 11305240-T-A **
15971225-CTTTTT-C 13859345-CTTTTT-C 18×T**
18872221-C-T 16760341-C-T **
13809781-C-A 11689075-C-A **
13711491-G-C 11555815-G-C **
13700584-A-T 11544908-A-T **
10659979-T-C **
10982182-T-C **
10950354-C-T **
17580765-A-T 15468885-A-T 16×T**
10950350-C-A **
10950349-A-C **
10950325-G-A **
10950323-G-C **
10795877-A-C **
17597744-GAA-G 15485864-GAA-G 14×A**
10751150-A-T BY83739 **
10751128-ATCCTCCATTT-G **
2845221-CAAA-C 2977180-CAAA-C 38×A**
16505988-C-A 14394108-C-A Y96525 31×T**
10683661-A-ACCCCC **
10683632-T-C **
10683627-T-C **
10993230-C-T **
10693354-T-A **
11037118-C-A **
10870608-A-T **
7160830-C-A 7292789-C-A **
7138400-T-TA 7270359-T-TA 11×A**
10800897-T-C **
10800882-T-TTACAC **
10800817-TTCTAC-T **
11037108-C-A **
10899992-T-A **
10989188-T-A **
10989181-C-T **
10989171-C-T **
11030683-C-A **
11030681-A-C **
10754994-T-G **
24595409-T-A 22449262-T-A P3_t2 **
10909686-AG-A **
10769568-A-T **
10993222-C-A **
10839813-C-A **
10948303-T-C **
10982280-C-A **
10928906-C-A **
18742441-AACT-A 16630561-AACT-A **
13453359-C-T 11297683-C-T **
10927464-T-C **
15612385-A-G 13500505-A-G **
10972660-C-G **
10972647-A-T **
56843866-G-T **
10759183-T-C **
21371072-C-A 19209186-C-A **
10759163-T-G **
10759161-C-A **
10759157-A-T **
10759150-A-T **
10759148-C-T **
13488803-G-T 11333127-G-T **
10986847-C-G **
6331288-A-G 6463247-A-G IR3_Dst **
10755390-T-TCCTTTC **
10856439-C-A **
24597813-CTTTT-C 22451666-CTTTT-C P3_t2 22×T**
8160172-C-A 8292131-C-A **
10759208-C-T **
10980057-TTCCAC-T **
10930550-G-T **
10759203-T-C **
7164491-AT-A 7296450-AT-A **
16860781-AAAG-A 14748901-AAAG-A **
10880367-A-T **
13460919-G-A 11305243-G-A **
10870468-G-T **
14933814-C-A 12821879-C-A **
23569136-C-A 21407250-C-A **
19286313-C-A 17174433-C-A **
13698567-C-G 11542891-C-G BY88975 **
9465138-CTGTGTGTG-C 9627529-CTGTGTGTG-C 15×TG**
10788709-T-A **
13213540-C-A 11057864-C-A **
22962142-T-C 20800256-T-C **
10898380-T-A **
10982185-AATCAC-A **
23997126-C-A 21850979-C-A **
13718282-A-C 11562606-A-C **
13718278-A-G 11562602-A-G **
13718268-C-T 11562592-C-T **
19303710-C-A 17191830-C-A **
19568180-C-A 17456300-C-A P5_Prx **
22954599-TC-T 20792713-TC-T **
11036137-C-G **
10801559-T-A **
10801547-C-G **
10990854-T-C **
10982270-C-T **
10982234-C-G **
10759206-T-C **
28806471-G-A 26660324-G-A **
10759201-C-T **
2806231-TA-T 2938190-TA-T **
23455-G-A **
3831419-G-GA 3963378-G-GA 9×A**
27862636-G-T 25716489-G-T P1_Y2 **
17306396-T-G 15194516-T-G **
10780670-C-T **
10983964-C-T **
10781146-C-A **
10947105-C-A **
8166707-C-A 8298666-C-A **
12370764-C-A **
13488797-G-T 11333121-G-T **
10792329-T-C **
10792261-T-G **
11675691-C-A **
10964797-C-A **
24573442-T-G 22427295-T-G P3_t2 **
11002050-T-C **
10751009-T-TATTCC **
11030701-C-A **
8983368-G-T 9145759-G-T **
19706127-AT-A 17594247-AT-A P5_Prx **
13938035-C-A 11817329-C-A **
13940254-C-A 11819548-C-A **
10899940-C-A **
10992218-C-T **
10994051-C-A **
10909647-G-T **
10986838-G-T **
56851349-T-A **
56835937-TCCA-T **
5644696-C-A 5776655-C-A **
10940823-T-C **
27862619-G-T 25716472-G-T P1_Y2 **
28806501-T-A 26660354-T-A **
10972221-C-A **
18094232-G-T 15982352-G-T **
14537747-C-A 12425948-C-A **
10845630-C-T **
3229193-T-A 3361152-T-A **
10671042-A-C **
13826145-A-AGGAATGGAAT 11705439-A-AGGAATGGAAT 10×GGAAT***
8465934-TTGTG-T,TTG 8597893-TTGTG-T,TTG 20×TG***
13470601-C-T 11314925-C-T ***
16919-G-A ***
9082238-C-A 9244629-C-A ***
18392975-C-T 16281095-C-T P6_Gap 15×CTTT***
2798710-ATTTT-A,ATTT 2930669-ATTTT-A,ATTT 20×T***
16520992-CAA-C,CA 14409112-CAA-C,CA 16×A***
18392973-C-T 16281093-C-T P6_Gap ***
58977368-CT-C 56831221-CT-C ***
15047617-C-A 12935708-C-A ***
22255177-G-A 20093291-G-A DYZ19 ***
8648172-GATATATATATAT-G 8780131-GATATATATATAT-G 14×AT***
5864496-C-A 5996455-C-A ***
10825311-A-G ***
22815505-G-GTTT 20653619-G-GTTT 20×T***
18392969-C-T 16281089-C-T P6_Gap ***
14825824-CTTTTTT-C 12713891-CTTTTTT-C 18×T***
21723784-TA-T 19561898-TA-T 10×A***
24384048-A-G 22237901-A-G ***
16612805-ATT-A 14500925-ATT-A 16×T***
10776049-C-CACTCC,T ***
13456274-G-A 11300598-G-A ***
23197360-CA-C,CAA 21035474-CA-C,CAA 17×A***
9221750-C-T 9384141-C-T ***
56838610-G-T ***
10799620-C-G ***
16631750-CTT-C 14519870-CTT-C 14×T***
56838672-T-A ***
17527438-GTATA-G 15415558-GTATA-G 18×TA***
21261826-T-TA 19099940-T-TA 26×A***
16431821-G-GA 14319941-G-GA 10×A***
56844959-G-A,C ***
58978066-G-A 56831919-G-A ***
7524612-C-A 7656571-C-A ***
56846948-G-T ***
11003765-CTCCAC-C,CTCCAA ***
4107943-C-A 4239902-C-A ***
11025495-G-A,T ***
28812996-G-A 26666849-G-A ***
17707376-CAAAAA-C 15595496-CAAAAA-C 23×A***
24458752-C-A 22312605-C-A ***
14588887-G-T 12477087-G-T ***
14549323-AAAG-A 12437524-AAAG-A ***
56839768-T-A ***
10797942-CTCTTT-C,CTCCTT ***
9859192-CAA-C,CAAA 10021583-CAA-C,CAAA 17×A***
14232424-C-A 12111718-C-A ***
10686618-T-C ***
13992191-C-CAAA 11871485-C-CAAA 22×A***
10986884-C-T ***
21853740-C-A 19691854-C-A ***
4302082-A-G 4434041-A-G ***
28722436-TA-T,TAA 26576289-TA-T,TAA 13×A***
56832597-C-T ***
13458713-CTCCATTCCAT-C 11303037-CTCCATTCCAT-C 9×TCCAT***
21086134-C-A 18924248-C-A ***
17885821-G-T 15773941-G-T ***
21929598-GTGTATATA-G,GTATATA 19767712-GTGTATATA-G,GTATATA ***
19492290-CAAAAAAAAAAAAAAAAAAAAA-C,CAA 17380410-CAAAAAAAAAAAAAAAAAAAAA-C,CAA 37×A***
10760366-A-ACTCAG ***
21518316-C-A 19356430-C-A ***
20989154-CATATATATAT-C,CATAT 18827268-CATATATATAT-C,CATAT P4_Dst 19×AT***
10982240-A-T ***
17584130-ATTTT-A 15472250-ATTTT-A 26×T***
13829189-C-A 11708483-C-A FGC62554 ***
21220240-CTTT-C,CTT 19058354-CTTT-C,CTT 19×T***
13489069-A-T 11333393-A-T ***
10807239-A-T ***
15947946-G-T 13836066-G-T ***
56839738-G-T ***
9221717-C-G 9384108-C-G ***
18125751-GA-G,GAAAGA 16013871-GA-G,GAAAGA ***
18045371-CTTT-C,CTT 15933491-CTTT-C,CTT 18×T***
10825301-A-T ***
56832846-G-GTCCACTCCAC ***
10799649-A-G ***
10980751-T-C ***
14715677-G-T 12603744-G-T ***
14526955-C-A 12415156-C-A ***
9221716-C-T 9384107-C-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 171435975443479848747862376
Used in age calculations975443479848747862376
Counts of SNPs32
Variant counts last updated 2018-07-20 16:20:26.



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