Milligan
FTDNA: H1936, BigY2: H1936MDKA Birth:

Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA H1936 | BigY2 H1936 |
---|---|---|---|---|---|---|---|---|---|
9669058-C-T | 9831449-C-T | BY80411 | IR3_Prx | ** | + | ||||
15289593-A-G | 13177692-A-G | BY18165 | Y | + | + | ||||
23165362-A-G | 21003476-A-G | BY18191 | Y | + | + | ||||
56858144-C-A | ** | ||||||||
10863959-C-A | ** | ||||||||
10993470-G-T | ** | ||||||||
10967347-G-T | ** | ||||||||
10967326-G-T | ** | ||||||||
10959045-G-T | ** | ||||||||
10921774-A-G | ** | ||||||||
10921117-A-T | ** | ||||||||
10898726-A-G | ** | ||||||||
10888647-C-T | ** | ||||||||
10826862-T-C | ** | ||||||||
10841191-C-A | ** | ||||||||
10837690-T-C | ** | ||||||||
11002167-C-G | ** | ||||||||
10801707-C-CACAGA | ** | ||||||||
10798721-C-A | ** | ||||||||
10777424-C-A | ** | ||||||||
10777208-C-A | ** | ||||||||
10769511-A-T | ** | ||||||||
10676833-C-A | ** | ||||||||
10672642-T-C | ** | ||||||||
10997824-G-T | ** | ||||||||
11015928-C-A | ** | ||||||||
11004233-C-A | ** | ||||||||
14178070-G-A | 12057364-G-A | ** | |||||||
14533297-C-A | 12421498-C-A | ** | |||||||
14431191-G-T | 12310464-G-T | ** | |||||||
14389992-T-C | 12269288-T-C | ** | |||||||
14389984-A-G | 12269280-A-G | ** | |||||||
14344894-C-A | 12224189-C-A | ** | |||||||
14226543-A-G | 12105837-A-G | ** | |||||||
14191320-C-T | 12070614-C-T | ** | |||||||
14181190-A-G | 12060484-A-G | ** | |||||||
14149430-T-C | 12028724-T-C | ** | |||||||
10052487-G-T | 10214878-G-T | ** | |||||||
14149425-C-A | 12028719-C-A | ** | |||||||
13942155-G-A | 11821449-G-A | ** | |||||||
13939808-A-G | 11819102-A-G | ** | |||||||
13859380-A-ACAGT | 11738674-A-ACAGT | ** | |||||||
13632986-G-A | 11477310-G-A | ** | |||||||
13582997-T-A | 11427321-T-A | ** | |||||||
13573613-T-A | 11417937-T-A | FT445594 | ** | ||||||
13512906-G-A | 11357230-G-A | ** | |||||||
13205579-CAAAAA-C | 11049903-CAAAAA-C | 17×A | ** | ||||||
10653274-T-C | ** | ||||||||
10024993-T-C | 10187384-T-C | ** | |||||||
10052426-G-T | 10214817-G-T | ** | |||||||
4756958-A-T | 4888917-A-T | ** | |||||||
5699153-G-T | 5831112-G-T | ** | |||||||
5443411-A-T | 5575370-A-T | ** | |||||||
5216697-A-G | 5348656-A-G | ** | |||||||
5000505-C-A | 5132464-C-A | ** | |||||||
4908720-G-C | 5040679-G-C | ** | |||||||
4889307-G-A | 5021266-G-A | ** | |||||||
4887702-C-A | 5019661-C-A | ** | |||||||
4803101-C-A | 4935060-C-A | ** | |||||||
4688478-T-A | 4820437-T-A | ** | |||||||
5763828-G-T | 5895787-G-T | ** | |||||||
4559688-C-A | 4691647-C-A | ** | |||||||
4557206-C-A | 4689165-C-A | ** | |||||||
4547672-G-A | 4679631-G-A | ** | |||||||
4460605-T-C | 4592564-T-C | ** | |||||||
4325487-C-A | 4457446-C-A | ** | |||||||
4302537-C-A | 4434496-C-A | ** | |||||||
4292936-C-A | 4424895-C-A | ** | |||||||
4001526-G-T | 4133485-G-T | ** | |||||||
3877221-T-C | 4009180-T-C | ** | |||||||
5763784-G-T | 5895743-G-T | ** | |||||||
5957278-C-G | 6089237-C-G | ** | |||||||
14567989-C-A | 12456189-C-A | ** | |||||||
7370990-G-A | 7502949-G-A | ** | |||||||
9623303-T-G | 9785694-T-G | IR3_Prx | ** | ||||||
8848293-C-A | 8980252-C-A | ** | |||||||
8698767-T-C | 8830726-T-C | ** | |||||||
8694124-C-A | 8826083-C-A | ** | |||||||
8409095-C-A | 8541054-C-A | ** | |||||||
8159355-C-A | 8291314-C-A | ** | |||||||
8056220-G-T | 8188179-G-T | ** | |||||||
7758414-C-A | 7890373-C-A | ** | |||||||
7368991-A-G | 7500950-A-G | ** | |||||||
6356164-A-G | 6488123-A-G | ** | |||||||
7269937-T-C | 7401896-T-C | ** | |||||||
7107588-C-G | 7239547-C-G | ** | |||||||
7038541-T-C | 7170500-T-C | ** | |||||||
7030557-C-T | 7162516-C-T | ** | |||||||
7009200-T-TC | 7141159-T-TC | ** | |||||||
6690495-C-A | 6822454-C-A | ** | |||||||
6646689-T-A | 6778648-T-A | ** | |||||||
6596590-T-A | 6728549-T-A | ** | |||||||
6366405-C-A | 6498364-C-A | ** | |||||||
14560432-C-G | 12448633-C-G | ** | |||||||
14844482-T-C | 12732548-T-C | ** | |||||||
14589280-C-A | 12477480-C-A | ** | |||||||
22689960-A-T | 20528074-A-T | ** | |||||||
23364118-G-A | 21202232-G-A | ** | |||||||
23185999-C-T | 21024113-C-T | ** | |||||||
23128035-C-A | 20966149-C-A | FT140991 | ** | ||||||
23009202-C-T | 20847316-C-T | ** | |||||||
23007793-C-T | 20845907-C-T | ** | |||||||
22852030-T-C | 20690144-T-C | ** | |||||||
22808846-T-A | 20646960-T-A | ** | |||||||
22757595-C-A | 20595709-C-A | ** | |||||||
22542878-T-C | 20380992-T-C | ** | |||||||
23377459-G-A | 21215573-G-A | ** | |||||||
22170605-G-T | 20008719-G-T | ** | |||||||
22080825-G-T | 19918939-G-T | ** | |||||||
21950024-C-G | 19788138-C-G | ** | |||||||
21669112-C-A | 19507226-C-A | ** | |||||||
21582581-G-T | 19420695-G-T | ** | |||||||
21502940-C-T | 19341054-C-T | ** | |||||||
21409022-C-A | 19247136-C-A | ** | |||||||
21394588-G-T | 19232702-G-T | ** | |||||||
21352975-C-A | 19191089-C-A | ** | |||||||
23372294-C-A | 21210408-C-A | ** | |||||||
23600295-C-A | 21438409-C-A | ** | |||||||
20989050-G-C | 18827164-G-C | P4_Dst | ** | ||||||
28567023-C-A | 26420876-C-A | ** | |||||||
56844022-C-G | ** | ||||||||
28734869-C-A | 26588722-C-A | ** | |||||||
28726179-C-A | 26580032-C-A | ** | |||||||
28689205-T-C | 26543058-T-C | ** | |||||||
28607593-A-G | 26461446-A-G | ** | |||||||
28595632-G-T | 26449485-G-T | ** | |||||||
28592051-A-G | 26445904-A-G | ** | |||||||
28589454-T-G | 26443307-T-G | ** | |||||||
28557995-C-A | 26411848-C-A | ** | |||||||
23779581-G-T | 21617695-G-T | ** | |||||||
28535370-A-T | 26389223-A-T | ** | |||||||
28514539-T-C | 26368392-T-C | ** | |||||||
28505551-T-A | 26359404-T-A | ** | |||||||
26478055-A-T | 24331908-A-T | P1_Y1 | ** | ||||||
26463134-G-TTT | 24316987-G-TTT | P1_Y1 | ** | ||||||
24446737-C-A | 22300590-C-A | ** | |||||||
24407432-T-C | 22261285-T-C | ** | |||||||
24212253-C-A | 22066106-C-A | P3_b1 | ** | ||||||
23818603-C-A | 21656717-C-A | ** | |||||||
21139342-C-T | 18977456-C-T | ** | |||||||
20535159-G-T | 18373273-G-T | P5_Dst | ** | ||||||
14774234-C-G | 12662303-C-G | ** | |||||||
15758630-G-C | 13646750-G-C | ** | |||||||
16490035-A-G | 14378155-A-G | ** | |||||||
16344692-C-T | 14232812-C-T | ** | |||||||
16321883-C-A | 14210003-C-A | ** | |||||||
16171660-C-T | 14059780-C-T | ** | |||||||
16051186-C-A | 13939306-C-A | ** | |||||||
16044465-T-G | 13932585-T-G | ** | |||||||
15987939-T-A | 13876059-T-A | ** | |||||||
15858329-A-G | 13746449-A-G | ** | |||||||
15748030-C-T | 13636150-C-T | ** | |||||||
16607686-C-A | 14495806-C-A | ** | |||||||
15608223-A-G | 13496343-A-G | ** | |||||||
15432083-C-A | 13320203-C-A | ** | |||||||
15431880-A-C | 13320000-A-C | ** | |||||||
15284409-C-A | 13172508-C-A | ** | |||||||
15248172-T-A | 13136258-T-A | ** | |||||||
15179999-A-G | 13068085-A-G | ** | |||||||
15103679-C-A | 12991767-C-A | ** | |||||||
15060723-G-C | 12948815-G-C | ** | |||||||
3850004-C-A | 3981963-C-A | ** | |||||||
16598694-A-C | 14486814-A-C | ** | |||||||
16618809-C-A | 14506929-C-A | ** | |||||||
20022444-T-C | 17910564-T-C | P5_Prx | ** | ||||||
18751575-T-G | 16639695-T-G | ** | |||||||
19721473-C-A | 17609593-C-A | P5_Prx | ** | ||||||
19544104-G-A | 17432224-G-A | ** | |||||||
19465754-TGTCCATTTTACAGAGAATTGATTG-T | 17353874-TGTCCATTTTACAGAGAATTGATTG-T | ** | |||||||
19465606-G-A | 17353726-G-A | ** | |||||||
19412740-G-T | 17300860-G-T | ** | |||||||
19053273-C-G | 16941393-C-G | ** | |||||||
18951421-C-T | 16839541-C-T | ** | |||||||
18940716-G-A | 16828836-G-A | ** | |||||||
18930249-C-G | 16818369-C-G | ** | |||||||
18653428-A-G | 16541548-A-G | ** | |||||||
16914363-A-T | 14802483-A-T | ** | |||||||
18647543-C-A | 16535663-C-A | ** | |||||||
18412168-C-A | 16300288-C-A | P6_Gap | ** | ||||||
18050312-A-T | 15938432-A-T | ** | |||||||
17737399-C-A | 15625519-C-A | ** | |||||||
17503732-C-A | 15391852-C-A | ** | |||||||
17376489-G-T | 15264609-G-T | ** | |||||||
17370965-C-A | 15259085-C-A | FT264360 | ** | ||||||
17362793-C-A | 15250913-C-A | ** | |||||||
16926185-C-A | 14814305-C-A | ** | |||||||
3875932-C-A | 4007891-C-A | ** | |||||||
4103822-T-C | 4235781-T-C | ** | |||||||
3836906-G-GA | 3968865-G-GA | ** | |||||||
28761430-G-T | 26615283-G-T | ** | |||||||
10956378-G-T | ** | ||||||||
7475199-G-T | 7607158-G-T | IR1_L | ** | ||||||
7253702-C-A | 7385661-C-A | ** | |||||||
18401271-C-A | 16289391-C-A | P6_Gap | ** | ||||||
21457853-G-T | 19295967-G-T | ** | |||||||
11650689-C-A | ** | ||||||||
11676674-A-C | ** | ||||||||
6514243-C-A | 6646202-C-A | ** | |||||||
16575084-C-A | 14463204-C-A | ** | |||||||
2855464-C-T | 2987423-C-T | Y23320 | ** | ||||||
11018236-T-A | ** | ||||||||
7085227-C-A | 7217186-C-A | ** | |||||||
21459692-C-A | 19297806-C-A | ** | |||||||
27952031-T-A | 25805884-T-A | P1_Y2 | ** | ||||||
16058752-C-A | 13946872-C-A | ** | |||||||
10801737-C-A | ** | ||||||||
21511225-C-A | 19349339-C-A | ** | |||||||
4703088-C-A | 4835047-C-A | ** | |||||||
10666565-CTCCCT-C | ** | ||||||||
6293390-T-C | 6425349-T-C | IR3_Dst | ** | ||||||
13708071-C-A | 11552395-C-A | ** | |||||||
15179250-C-A | 13067336-C-A | ** | |||||||
10829037-C-A | ** | ||||||||
26066361-T-G | 23920214-T-G | P1_Y1 | ** | ||||||
15687716-C-A | 13575836-C-A | ** | |||||||
24466064-A-C | 22319917-A-C | ** | |||||||
4094504-C-T | 4226463-C-T | ** | |||||||
8761928-C-A | 8893887-C-A | ** | |||||||
3747982-C-A | 3879941-C-A | ** | |||||||
22593009-C-A | 20431123-C-A | ** | |||||||
10666578-C-T | ** | ||||||||
28596787-C-A | 26450640-C-A | ** | |||||||
7590793-C-A | 7722752-C-A | ** | |||||||
10936988-G-T | ** | ||||||||
6714595-C-A | 6846554-C-A | ** | |||||||
13716681-C-G | 11561005-C-G | ** | |||||||
9173098-C-A | 9335489-C-A | ** | |||||||
10666608-T-C | FT428641 | ** | |||||||
10666602-C-T | ** | ||||||||
18926887-AAAG-A | 16815007-AAAG-A | ** | |||||||
14630477-C-A | 12518546-C-A | ** | |||||||
5358524-C-A | 5490483-C-A | ** | |||||||
4889301-C-A | 5021260-C-A | ** | |||||||
7418686-C-A | 7550645-C-A | ** | |||||||
3877210-C-A | 4009169-C-A | ** | |||||||
5316961-C-A | 5448920-C-A | ** | |||||||
10801713-A-C | ** | ||||||||
27952051-T-A | 25805904-T-A | P1_Y2 | ** | ||||||
24595384-GA-G | 22449237-GA-G | P3_t2 | ** | ||||||
14689304-C-A | 12577370-C-A | ** | |||||||
13533992-C-CA | 11378316-C-CA | 9×A | ** | ||||||
10880303-A-G | ** | ||||||||
14774253-CTTTTTTTTT-C | 12662322-CTTTTTTTTT-C | 28×T | ** | ||||||
22963628-C-A | 20801742-C-A | ** | |||||||
6892288-C-A | 7024247-C-A | ** | |||||||
22011579-G-A | 19849693-G-A | ** | |||||||
9986032-C-A | 10148423-C-A | ** | |||||||
4888104-AC-A | 5020063-AC-A | ** | |||||||
13404783-T-C | 11249107-T-C | ** | |||||||
13522098-G-T | 11366422-G-T | Z2003 | ** | ||||||
6930754-C-A | 7062713-C-A | FT380142 | ** | ||||||
10880307-C-T | ** | ||||||||
4065236-C-A | 4197195-C-A | ** | |||||||
14910986-T-C | 12799053-T-C | ** | |||||||
22079723-C-A | 19917837-C-A | ** | |||||||
18779378-C-A | 16667498-C-A | ** | |||||||
16938311-C-A | 14826431-C-A | ** | |||||||
14568843-C-A | 12457043-C-A | ** | |||||||
10970699-C-A | ** | ||||||||
17218300-CTTTT-C | 15106420-CTTTT-C | 16×T | ** | ||||||
2855467-A-T | 2987426-A-T | 16×T | ** | ||||||
14910987-G-A | 12799054-G-A | ** | |||||||
14910984-A-G | 12799051-A-G | ** | |||||||
11003745-C-G | ** | ||||||||
10895939-A-T | ** | ||||||||
11003767-C-A | ** | ||||||||
4387909-C-A | 4519868-C-A | ** | |||||||
4293020-C-A | 4424979-C-A | ** | |||||||
21438414-C-A | 19276528-C-A | ** | |||||||
19532442-C-A | 17420562-C-A | ** | |||||||
7101008-A-C | 7232967-A-C | ** | |||||||
14492724-G-T | 12380921-G-T | ** | |||||||
22876606-C-A | 20714720-C-A | ** | |||||||
16931578-G-T | 14819698-G-T | ** | |||||||
11003716-T-G | ** | ||||||||
14658267-C-A | 12546332-C-A | ** | |||||||
4439484-C-A | 4571443-C-A | ** | |||||||
8673087-C-A | 8805046-C-A | ** | |||||||
10687147-C-A | ** | ||||||||
4222595-C-A | 4354554-C-A | ** | |||||||
5923767-T-C | 6055726-T-C | ** | |||||||
11665014-G-A | ** | ||||||||
3546774-C-A | 3678733-C-A | ** | |||||||
11027368-C-G | ** | ||||||||
10747895-C-A | ** | ||||||||
18138100-C-A | 16026220-C-A | ** | |||||||
17474703-C-A | 15362823-C-A | ** | |||||||
11003728-C-CGTA | ** | ||||||||
16682754-C-A | 14570874-C-A | ** | |||||||
10937902-C-A | ** | ||||||||
10747214-G-T | ** | ||||||||
8849852-C-A | 8981811-C-A | ** | |||||||
11676675-A-T | ** | ||||||||
10677216-C-A | ** | ||||||||
13311835-C-T | 11156159-C-T | ** | |||||||
15745794-C-A | 13633914-C-A | ** | |||||||
3275396-T-C | 3407355-T-C | ** | |||||||
3747949-C-A | 3879908-C-A | ** | |||||||
3725780-G-C | 3857739-G-C | ** | |||||||
3681704-G-T | 3813663-G-T | ** | |||||||
3620704-T-C | 3752663-T-C | ** | |||||||
3545804-G-T | 3677763-G-T | ** | |||||||
3535477-T-C | 3667436-T-C | ** | |||||||
3492694-T-A | 3624653-T-A | ** | |||||||
3389349-C-A | 3521308-C-A | ** | |||||||
3273148-A-G | 3405107-A-G | ** | |||||||
17549442-C-A | 15437562-C-A | ** | |||||||
3252352-T-C | 3384311-T-C | ** | |||||||
3091760-T-G | 3223719-T-G | ** | |||||||
2885733-C-G | 3017692-C-G | ** | |||||||
14006762-C-A | 11886056-C-A | ** | |||||||
5449504-G-T | 5581463-G-T | ** | |||||||
7567943-CAAAA-C | 7699902-CAAAA-C | 8×A | ** | ||||||
16768585-C-A | 14656705-C-A | ** | |||||||
22696219-T-A | 20534333-T-A | ** | |||||||
15927071-C-A | 13815191-C-A | ** | |||||||
24445395-A-G | 22299248-A-G | FT310142 | ** | ||||||
16904663-CCAAA-C | 14792783-CCAAA-C | ** | |||||||
8288733-C-A | 8420692-C-A | ** | |||||||
4875430-G-T | 5007389-G-T | ** | |||||||
14736068-C-A | 12624136-C-A | ** | |||||||
24445408-G-A | 22299261-G-A | ** | |||||||
10987389-C-A | ** | ||||||||
10937299-C-A | ** | ||||||||
18634822-C-A | 16522942-C-A | ** | |||||||
21207048-C-A | 19045162-C-A | ** | |||||||
6998118-C-A | 7130077-C-A | ** | |||||||
20640218-C-A | 18478332-C-A | P4_Prx | ** | ||||||
13558204-C-A | 11402528-C-A | ** | |||||||
19168711-A-G | 17056831-A-G | ** | |||||||
14614587-C-A | 12502785-C-A | ** | |||||||
13226253-C-A | 11070577-C-A | ** | |||||||
17474744-C-A | 15362864-C-A | ** | |||||||
19213573-C-A | 17101693-C-A | ** | |||||||
14218504-A-G | 12097798-A-G | ** | |||||||
15718025-C-A | 13606145-C-A | ** | |||||||
20459160-G-T | 18297274-G-T | P5_Dst | ** | ||||||
2885731-C-G | 3017690-C-G | ** | |||||||
11003735-C-CAT | ** | ||||||||
14558443-C-A | 12446644-C-A | ** | |||||||
28632817-C-A | 26486670-C-A | ** | |||||||
18211001-C-A | 16099121-C-A | ** | |||||||
10666958-C-CCATTG | ** | ||||||||
11003763-C-T | ** | ||||||||
24296172-T-TG | 22150025-T-TG | P3_t1 | ** | ||||||
13998200-C-A | 11877494-C-A | ** | |||||||
25182913-C-T | 23036766-C-T | g1 | *** | ||||||
14746124-G-A | 12634193-G-A | *** | |||||||
15092722-C-A | 12980811-C-A | *** | |||||||
22285947-G-C | 20124061-G-C | DYZ19 | *** | ||||||
11001478-C-T | *** | ||||||||
14266448-AT-A | 12145742-AT-A | *** | |||||||
3286009-C-A | 3417968-C-A | *** | |||||||
25190252-C-T | 23044105-C-T | g1 | *** | ||||||
13701374-G-A | 11545698-G-A | *** | |||||||
28601079-C-A | 26454932-C-A | *** | |||||||
16577618-A-C | 14465738-A-C | *** | |||||||
2833175-A-C | 2965134-A-C | *** | |||||||
10667010-A-G | *** | ||||||||
3047962-T-A | 3179921-T-A | *** | |||||||
17465086-T-C | 15353206-T-C | BY114985 | *** | ||||||
10667015-A-C | *** | ||||||||
15108997-G-GT | 12997084-G-GT | 8×T | *** | ||||||
17545640-C-T | 15433760-C-T | *** | |||||||
10659606-G-T | *** | ||||||||
8100681-C-A | 8232640-C-A | *** | |||||||
6943972-CT-C,CTT | 7075931-CT-C,CTT | 15×T | *** | ||||||
9334110-C-A | 9496501-C-A | *** | |||||||
18933496-T-C | 16821616-T-C | *** | |||||||
10842431-C-A | *** | ||||||||
10992669-C-A | *** | ||||||||
7534643-CAAAAAA-C,CAAAAA | 7666602-CAAAAAA-C,CAAAAA | 17×A | *** | ||||||
17474673-C-A | 15362793-C-A | *** | |||||||
2950267-C-A | 3082226-C-A | *** | |||||||
11652941-A-G | *** | ||||||||
10824222-A-C,T | *** | ||||||||
15109012-G-A | 12997099-G-A | *** | |||||||
6213699-C-A | 6345658-C-A | IR3_Dst | *** | ||||||
11001436-A-G | *** | ||||||||
22855229-TG-T | 20693343-TG-T | *** | |||||||
10935663-C-A | *** | ||||||||
2810387-TTTG-T,TTTTG | 2942346-TTTG-T,TTTTG | *** | |||||||
13194834-C-A | 11039158-C-A | *** | |||||||
56742721-G-A | *** | ||||||||
22364033-G-C | 20202147-G-C | DYZ19 | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Haplotype Progression
The data below reveals the progression of changes in the haplotype. The bottom row is the haplotype for this man and above him are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are very much a work in progress, and any suggested modifications are appreciated. I think we can use our vast collection of haplotype data to refine these haplotypes. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.
DYS393 | DYS390 | DYS19 | DYS391 | DYS385 | DYS426 | DYS388 | DYS439 | DYS389i | DYS392 | DYS389ii | DYS458 | DYS459 | DYS455 | DYS454 | DYS447 | DYS437 | DYS448 | DYS449 | DYS464 | DYS460 | Y-GATA-H4 | YCAII | DYS456 | DYS607 | DYS576 | DYS570 | CDY | DYS442 | DYS438 | DYS531 | DYS578 | DYF395S1 | DYS590 | DYS537 | DYS641 | DYS472 | DYF406S1 | DYS511 | DYS425 | DYS413 | DYS557 | DYS594 | DYS436 | DYS490 | DYS534 | DYS450 | DYS444 | DYS481 | DYS520 | DYS446 | DYS617 | DYS568 | DYS487 | DYS572 | DYS640 | DYS492 | DYS565 | DYS710 | DYS485 | DYS632 | DYS495 | DYS540 | DYS714 | DYS716 | DYS717 | DYS505 | DYS556 | DYS549 | DYS589 | DYS522 | DYS494 | DYS533 | DYS636 | DYS575 | DYS638 | DYS462 | DYS452 | DYS445 | Y-GATA-A10 | DYS463 | DYS441 | Y-GGAAT-1B07 | DYS525 | DYS712 | DYS593 | DYS650 | DYS532 | DYS715 | DYS504 | DYS513 | DYS561 | DYS552 | DYS726 | DYS635 | DYS587 | DYS643 | DYS497 | DYS510 | DYS434 | DYS461 | DYS435 | FTY371 | FTY303 | FTY10 | FTY284 | FTY219 | FTY324 | FTY327 | FTY394 | DYS538 | FTY220 | FTY254 | FTY19 | FTY4 | DYS577 | FTY24 | FTY346 | FTY160 | FTY62 | FTY400 | FTY114 | FTY246 | FTY26 | FTY368 | FTY173 | FTY209 | FTY337 | FTY81 | FTY387 | FTY361 | FTY330 | FTY65 | FTY168 | FTY171 | FTY136 | FTY53 | FTY40 | FTY386 | FTY100 | FTY152 | FTY55 | FTY297 | FTY370 | FTY103 | FTY64 | FTY174 | FTY313 | FTY362 | FTY342 | FTY161 | FTY374 | FTY316 | FTY101 | FTY204 | DYS477 | FTY192 | DYS502 | FTY341 | DYS493 | FTY1 | FTY227 | DYS499 | FTY391 | FTY353 | FTY332 | FTY163 | DYS483 | FTY172 | FTY180 | DYS581 | FTY179 | FTY188 | FTY369 | FTY70 | FTY63 | DYS508 | FTY347 | FTY83 | FTY277 | FTY276 | FTY195 | FTY109 | FTY356 | FTY215 | FTY105 | FTY123 | FTY242 | FTY214 | FTY132 | FTY262 | FTY333 | FTY208 | DYF398B | FTY43 | FTY166 | FTY13 | FTY11 | DYS584 | DYS608 | FTY95 | FTY151 | FTY388 | FTY256 | DYS580 | FTY234 | FTY268 | FTY139 | FTY27 | FTY75 | DYS512 | FTY329 | FTY320 | FTY7 | FTY247 | FTY211 | DYS474 | FTY39 | FTY376 | FTY37 | FTY373 | DYS475 | FTY138 | FTY288 | FTY264 | FTY93 | FTY380 | FTY18 | FTY115 | DYS569 | FTY390 | FTY46 | FTY243 | FTY322 | FTY281 | FTY153 | FTY181 | FTY184 | FTY359 | FTY121 | FTY74 | FTY279 | DYS530 | FTY45 | DYS573 | DYS542 | FTY36 | FTY304 | FTY203 | FTY291 | FTY142 | FTY191 | FTY183 | FTY141 | FTY299 | FTY193 | FTY124 | FTY16 | FTY236 | FTY185 | FTY378 | FTY225 | FTY397 | FTY3 | FTY67 | FTY182 | FTY334 | DYS623 | FTY348 | FTY357 | FTY275 | FTY306 | FTY383 | FTY253 | FTY285 | DYS645 | FTY17 | FTY85 | DYS598 | FTY375 | FTY325 | FTY12 | FTY365 | FTY35 | FTY237 | FTY238 | FTY305 | FTY56 | FTY129 | FTY352 | FTY292 | FTY154 | DYS539 | FTY301 | FTY366 | FTY231 | DYS618 | FTY216 | FTY82 | FTY393 | FTY155 | FTY68 | FTY32 | FTY265 | FTY300 | FTY143 | FTY201 | FTY199 | FTY86 | FTY98 | FTY144 | DYS541 | DYS507 | FTY20 | FTY116 | FTY308 | FTY177 | FTY89 | FTY158 | FTY22 | FTY84 | FTY186 | FTY396 | FTY91 | FTY29 | FTY78 | FTY229 | FTY260 | FTY250 | FTY364 | DYS476 | FTY221 | FTY57 | FTY377 | FTY384 | DYS466 | FTY363 | FTY137 | FTY69 | FTY72 | FTY251 | FTY2 | FTY217 | FTY257 | FTY120 | FTY25 | FTY252 | FTY33 | FTY42 | FTY54 | FTY372 | DYS480 | FTY176 | FTY76 | FTY66 | FTY197 | FTY385 | FTY270 | FTY298 | FTY198 | FTY117 | DYS544 | FTY159 | FTY232 | FTY156 | FTY343 | FTY296 | FTY311 | FTY344 | FTY178 | FTY367 | FTY73 | FTY112 | FTY295 | DYS616 | FTY338 | FTY196 | FTY157 | FTY162 | DYS551 | FTY148 | FTY94 | FTY52 | FTY131 | FTY9 | FTY194 | FTY8 | FTY318 | FTY317 | FTY99 | FTY289 | FTY169 | FTY51 | FTY345 | FTY398 | FTY111 | FTY273 | FTY382 | FTY47 | FTY30 | FTY147 | DYS615 | FTY302 | FTY354 | FTY326 | FTY88 | FTY248 | FTY267 | FTY170 | FTY60 | DYS453 | FTY249 | FTY167 | DYS624 | FTY134 | FTY235 | FTY145 | FTY14 | FTY80 | FTY50 | DYS514 | FTY340 | DYS585 | DYS516 | FTY293 | FTY207 | FTY278 | FTY210 | DYS523 | FTY269 | FTY530 | FTY1156 | FTY1070 | FTY906 | FTY1004 | FTY331 | FTY31 | FTY226 | FTY335 | DYS583 | FTY339 | FTY113 | FTY280 | FTY255 | FTY59 | DYS620 | FTY349 | FTY130 | FTY119 | DYF398A | FTY58 | FTY127 | FTY321 | FTY92 | FTY392 | DYF392 | FTY290 | FTY312 | FTY135 | FTY150 | FTY294 | FTY244 | FTY48 | FTY282 | DYS489 | FTY272 | FTY239 | FTY258 | FTY49 | DYS574 | FTY41 | FTY905 | FTY1103 | FTY502 | FTY743 | FTY443 | FTY670 | FTY883 | DYS631 | FTY1042 | FTY510 | DYS389B | FTY512 | FTY837 | DYS642 | FTY407 | FTY935 | FTY563 | FTY1016 | FTY1091 | FTY1049 | FTY1155 | DYS602 | FTY587 | FTY635 | FTY904 | DYS543 | FTY1148 | FTY861 | FTY742 | FTY433 | FTY1039 | FTY71 | FTY259 | FTY108 | FTY336 | FTY44 | FTY233 | FTY274 | FTY34 | FTY942 | FTY1068 | FTY945 | FTY1051 | FTY658 | FTY625 | FTY800 | FTY818 | FTY971 | FTY509 | FTY1025 | FTY835 | FTY984 | DYS637 | FTY832 | FTY689 | FTY998 | FTY520 | FTY445 | FTY809 | FTY428 | FTY562 | FTY897 | FTY1064 | FTY1088 | FTY1052 | DYF405 | FTY310 | FTY189 | DYS488 | FTY283 | FTY28 | FTY578 | DYS484 | FTY858 | FTY596 | FTY915 | FTY446 | FTY452 | FTY1006 | FTY612 | FTY507 | FTY614 | FTY824 | FTY1055 | FTY690 | FTY2318 | FTY981 | FTY946 | FTY1040 | DYS718 | FTY15 | FTY2025 | DYS685u1 | DYS596u5 | FTY1511 | FTY769 | FTY923 | FTY1167 | FTY415 | FTY505 | FTY241 | FTY2263 | FTY517 | FTY2180 | FTY775 | DYS567 | FTY444 | FTY691 | FTY1120 | FTY223 | DYF393u3 | FTY1850 | FTY645 | FTY696 | FTY1166 | FTY991 | FTY912 | DYS551u4 | FTY447 | DYS518u3 | FTY875 | DYS536u1 | FTY585 | FTY896 | FTY731 | FTY401 | FTY2011 | FTY665 | FTY814 | FTY2050 | DYS626u3 | FTY750 | FTY471 | FTY985 | FTY589 | FTY420 | FTY921 | FTY457 | FTY657 | FTY1110 | FTY485 | FTY315 | FTY1852 | FTY1107 | FTY489 | FTY522 | FTY654 | FTY110 | FTY881 | DYS470 | FTY534 | FTY1101 | FTY1933 | FTY936 | FTY772 | FTY1047 | FTY2351 | FTY680 | FTY2254 | FTY1030 | FTY2083 | FTY287 | FTY797 | FTY2366 | FTY951 | FTY774 | FTY1116 | DYS621 | FTY885 | FTY1012 | DYF394u1 | FTY888 | FTY648 | FTY725 | FTY643 | FTY927 | FTY1022 | DYS559 | FTY933 | FTY633 | FTY900 | FTY1848 | FTY478 | FTY533 | FTY467 | FTY1900 | FTY421 | DYS612u5 | DYS595 | FTY668 | FTY1028 | DYS579 | FTY646 | FTY1026 | FTY801 | FTY432 | FTY2301 | FTY466 | FTY531 | FTY1083 | FTY997 | FTY1114 | FTY830 | FTY655 | FTY910 | FTY1143 | FTY572 | DYS506 | DYS558u2 | FTY1127 | FTY712 | FTY634 | FTY499 | FTY1094 | FTY724 | FTY535 | FTY552 | FTY430 | FTY588 | DYS609 | FTY961 | FTY813 | FTY656 | FTY839 | FTY882 | FTY789 | FTY459 | FTY1037 | FTY435 | FTY1157 | FTY1546 | FTY2242 | FTY720 | DYS614u10 | FTY887 | FTY473 | FTY816 | FTY1060 | FTY472 | FTY943 | FTY1482 | FTY565 | DYS629 | FTY891 | FTY438 | DYS582 | FTY468 | FTY649 | FTY606 | FTY792 | FTY1087 | FTY895 | DYS614u3 | FTY574 | FTY1556 | FTY560 | FTY694 | FTY1097 | DYS518u6 | FTY876 | FTY2443 | FTY990 | FTY934 | FTY465 | FTY1046 | FTY1312 | FTY751 | FTY1915 | FTY678 | FTY419 | FTY958 | FTY456 | DYS592u1 | FTY1172 | FTY416 | FTY650 | FTY808 | FTY1542 | DYS721u1 | FTY746 | FTY2233 | FTY892 | FTY845 | FTY1034 | FTY498 | DYF382u1 | FTY637 | DYS588 | FTY947 | DYS543u3 | FTY644 | DYS703 | DYS649 | FTY212 | FTY781 | FTY1106 | FTY592 | FTY848 | FTY940 | FTY903 | FTY1081 | FTY952 | DYS706u2 | FTY1084 | FTY700 | FTY482 | DYS625u7 | FTY960 | FTY586 | FTY1330 | FTY1119 | FTY1762 | FTY1010 | FTY417 | FTY716 | DYS627u3 | FTY1942 | FTY1067 | FTY841 | FTY1031 | FTY1082 | FTY1023 | FTY475 | FTY222 | FTY962 | FTY423 | FTY664 | DYS517u1 | FTY1076 | FTY1557 | FTY1154 | DYS681 | FTY1002 | DYS706u1 | FTY1174 | FTY986 | FTY651 | FTY886 | FTY1078 | DYS546u4 | FTY1092 | FTY2471 | FTY1111 | FTY461 | FTY323 | FTY1013 | FTY506 | FTY550 | FTY767 | FTY721 | DYS548 | FTY559 | DYS705 | FTY640 | FTY613 | FTY402 | FTY2426 | FTY755 | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P312/S116 | 13 | 24 | 14 | 11 | 11-14 | 12 | 12 | 12 | 13 | 13 | 29 | 17 | 9-10 | 11 | 11 | 25 | 15 | 19 | 29 | 15-15-17-17 | 11 | 11 | 19-23 | 16 | 15 | 18 | 17 | 36-38 | 12 | 12 | 11 | 9 | 15-16 | 8 | 10 | 10 | 8 | 10 | 10 | 12 | 23-23 | 16 | 10 | 12 | 12 | 15 | 8 | 12 | 22 | 20 | 13 | 12 | 11 | 13 | 11 | 11 | 12 | 12 | 33 | 15 | 9 | 16 | 12 | 26 | 26 | 19 | 12 | 11 | 13 | 12 | 10 | 9 | 12 | 12 | 10 | 11 | 11 | 30 | 12 | 13 | 24 | 13 | 10 | 10 | 20 | 15 | 19 | 13 | 24 | 17 | 12 | 15 | 24 | 12 | 23 | 18 | 10 | 14 | 17 | 9 | 12 | 11 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
L21/S145 | 13 | 24 | 14 | 11 | 11-14 | 12 | 12 | 12 | 13 | 13 | 29 | 17 | 9-10 | 11 | 11 | 25 | 15 | 19 | 29 | 15-15-17-17 | 11 | 11 | 19-23 | 16 | 15 | 18 | 17 | 36-38 | 12 | 12 | 11 | 9 | 15-16 | 8 | 10 | 10 | 8 | 10 | 10 | 12 | 23-23 | 16 | 10 | 12 | 12 | 15 | 8 | 12 | 22 | 20 | 13 | 12 | 11 | 13 | 11 | 11 | 12 | 12 | 35 | 15 | 9 | 16 | 12 | 25 | 26 | 19 | 12 | 11 | 13 | 12 | 11 | 9 | 12 | 12 | 10 | 11 | 11 | 30 | 12 | 13 | 24 | 13 | 10 | 10 | 20 | 15 | 19 | 13 | 24 | 17 | 12 | 15 | 24 | 12 | 23 | 18 | 10 | 14 | 17 | 9 | 12 | 11 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Milligan | 13 | 25 | 14 | 11 | 11-14 | 12 | 12 | 12 | 13 | 14 | 30 | 18 | 9-10 | 11 | 11 | 25 | 15 | 18 | 30 | 15-16-16-17 | 11 | 12 | 19-23 | 17 | 16 | 17 | 17 | 39-39 | 12 | 12 | 11 | 9 | 15-16 | 8 | 10 | 10 | 8 | 10 | 10 | 12 | 21-23 | 17 | 10 | 12 | 12 | 15 | 8 | 12 | 25 | 20 | 13 | 12 | 11 | 13 | 11 | 11 | 12 | 12 | 33 | 15 | 9 | 16 | 12 | 25 | 26 | 19 | 12 | 11 | 12 | 12 | 11 | 9 | 14 | 12 | 10 | 11 | 11 | 30 | 12 | 12 | 24 | 13 | 10 | 10 | 23 | 15 | 19 | 13 | 24 | 18 | 13 | 15 | 24 | 12 | 23 | 18 | 10 | 14 | 17 | 9 | 13 | 11 |
Age Analysis Information (work in progress)
All | McDonald | YFull | |
Kit: H1936 | 10863544 | 7893941 | 7974163 |
Kit: H1936 | 9924653 | 8070499 | 7941606 |
Used in age calculations | 10863544 | 8070499 | 7974163 |
Counts of SNPs | 2 | 0 |
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