Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > Z295/S1217 > S25783 > CTS4065 > 15548847GACAC-G > FGC15710 > CTS10029 > BY3190 > FGC29721 > CTS4183 > A14311 > Y59136 > Y50968

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
51483
6278285-T-G 6410244-T-G BY6688 IR3_Dst A*
5864309-C-G 5996268-C-G BY58917 +
6985800-C-T 7117759-C-T BY62728 YY+
15548038-C-A 13436158-C-A BY102436 YY+
15623041-A-G 13511161-A-G BY102965 YY+
19509072-G-T 17397192-G-T BY129689 YY+
21075539-A-G 18913653-A-G BY130266 YY+
17534376-G-GT,GTT 15422496-G-GT,GTT 12×T*
6444869-C-T 6576828-C-T **
23142339-C-G 20980453-C-G CTS11504 M5559 PF1892 **
27699957-C-T 25553810-C-T P1_Y2 8×AT**
13990180-C-CT 11869474-C-CT **
21742563-C-T 19580677-C-T YP214 FGC7056 AM01287 **
13486763-A-G 11331087-A-G **
13486834-A-G 11331158-A-G **
13486804-T-A 11331128-T-A **
13457703-T-C 11302027-T-C **
20510961-ATTTT-A 18349075-ATTTT-A P5_Dst 32×T**
14743413-CTT-C 12631481-CTTT-C 12×T**
10967550-T-G **
4918863-C-A 5050822-C-A **
10926663-C-T **
10992302-C-A **
10858447-C-T **
10999563-C-A **
22449667-C-A 20287781-C-A DYZ19 **
11021041-T-A **
4899182-G-T 5031141-G-T **
10831529-T-C **
16424860-C-A 14312980-C-A **
11028139-C-A **
22703630-G-T 20541744-G-T **
10790239-C-T **
56846268-G-C **
10999895-AT-A **
10999899-C-CT **
10999919-C-T **
10999925-A-T **
10935514-T-A **
10753247-CTCCAT-C **
13355522-C-A 11199846-C-A FGC58406 **
10790251-C-T BY83835 **
11028131-A-G **
11022063-C-T **
11022068-T-C **
10831523-CTCT-C **
11022899-C-CTCAAT **
11004426-A-T **
10792751-T-G **
10924992-C-A **
10792742-C-T **
10792752-C-A **
10792772-C-T **
13721065-A-G 11565389-A-G **
10881019-T-A **
10798331-C-CT **
10798332-A-ATTCT **
10798343-T-TTCTTC **
10672103-C-A **
11022884-T-C **
28593764-C-A 26447617-C-A **
10785279-A-G **
10653431-C-A **
10904078-T-C **
9601490-ATG-A 9763881-ATG-A IR3_Prx **
11028117-TTACGC-T **
8386132-T-G 8518091-T-G **
10895759-T-C **
18961665-C-A 16849785-C-A **
10935528-A-T **
2651906-G-T 2783865-G-T **
10987251-G-T **
7335713-C-CAA 7467672-C-CAA 15×A**
18037973-C-A 15926093-C-A **
2651908-G-T 2783867-G-T **
16969400-CTT-C 14857520-CTT-C 11×T**
13486842-A-T 11331166-A-T **
13486844-G-A 11331168-G-A **
13486861-C-A 11331185-C-A **
17081231-A-T 14969351-A-T **
11021001-T-A **
11021002-T-C **
6177555-C-A 6309514-C-A IR3_Dst **
11028112-C-T **
10671055-C-G **
11030161-TCCAA-C **
3849432-C-A 3981391-C-A **
10769459-CCATTG-C **
10982288-T-C **
10982290-T-G **
10831548-T-C **
17159570-CT-C 15047690-CT-C 9×T**
25990598-TTTTTC-T 23844451-TTTTTC-T P1_Y1 4×TTTTC**
14177947-C-A 12057241-C-A **
10904047-A-T **
22164249-A-C 20002363-A-C **
13457710-A-G 11302034-A-G **
14372107-C-A 12251403-C-A **
56839691-T-G **
10906876-A-T **
5204626-C-A 5336585-C-A **
19600539-G-T 17488659-G-T P5_Prx **
6534778-C-A 6666737-C-A **
13238373-C-A 11082697-C-A **
16413584-C-A 14301704-C-A **
23435877-A-G 21273991-A-G **
14230239-C-A 12109533-C-A **
10758000-C-A **
10769484-C-G **
22076273-C-A 19914387-C-A **
15789152-C-A 13677272-C-A **
21473804-C-A 19311918-C-A **
10792605-A-C **
11022052-A-G **
7256093-G-GAAA 7388052-G-GAAA 18×A**
4460955-T-C 4592914-T-C **
10914530-G-T **
18480045-A-AG 16368165-A-AG P6_Dst **
10926706-T-G **
11028177-T-G **
10036033-C-A 10198424-C-A **
11018439-C-A **
10904093-C-A **
11006076-G-A **
11006080-T-A **
11006083-A-C **
11006104-T-A **
22075896-G-A 19914010-G-A **
11666293-G-A **
15338784-C-A 13226902-C-A **
10791026-C-T **
10867973-T-G **
10867996-A-T **
10766886-C-A **
10921269-T-A **
7897156-G-T 8029115-G-T **
10791019-C-G **
22029956-C-A 19868070-C-A **
17749320-C-A 15637440-C-A **
10906875-T-A **
18184739-GA-G 16072859-GA-G **
28548640-C-A 26402493-C-A **
56840086-C-A **
8974489-A-C 9136880-A-C **
10632518-C-A **
19223110-C-A 17111230-C-A **
10682951-T-G **
56841507-C-A **
10655079-C-T **
10772435-C-CGAATA **
7199998-A-C 7331957-A-C **
14142998-G-T 12022292-G-T **
7474444-G-T 7606403-G-T IR1_L **
22309882-G-T 20147996-G-T DYZ19 **
9832728-C-A 9995119-C-A **
10967548-C-G **
13474477-C-A 11318801-C-A **
3061094-C-A 3193053-C-A **
3164765-G-T 3296724-G-T **
2773562-T-C 2905521-T-C **
2839878-G-C 2971837-G-C **
2923759-G-T 3055718-G-T **
2968166-G-GAAA 3100125-G-GAAA 13×A**
2968215-G-T 3100174-G-T **
3804511-C-A 3936470-C-A **
4070184-A-G 4202143-A-G **
5523678-C-A 5655637-C-A **
5599358-C-A 5731317-C-A **
5737785-C-A 5869744-C-A **
5965820-C-A 6097779-C-A **
5976919-T-G 6108878-T-G **
6324296-C-A 6456255-C-A IR3_Dst **
6367441-G-T 6499400-G-T **
6580058-G-GTTT 6712017-G-GTTT 14×T**
6598480-C-A 6730439-C-A **
7214511-G-A 7346470-G-A **
7243457-A-G 7375416-A-G **
7343045-G-T 7475004-G-T **
7461135-T-A 7593094-T-A IR1_L **
8556199-G-T 8688158-G-T **
8974507-T-G 9136898-T-G **
9940975-C-A 10103366-C-A **
10012843-C-A 10175234-C-A **
10020281-C-A 10182672-C-A **
10024383-G-T 10186774-G-T **
10677411-C-T **
10766837-C-A **
10791015-A-T **
10791029-C-CATTG **
10794434-C-A **
10806822-G-T **
10811129-C-A **
10823857-C-A **
10825261-A-T **
10851068-T-C **
10880296-CCATT-C **
10881001-T-TCCACC **
10884650-C-G **
10885016-C-A **
10904031-A-C **
10904034-C-T FGC77248 **
10904056-G-A **
10904065-TACAGGG-T **
10904101-C-T **
10906818-C-T **
10906839-T-A **
10906868-A-G **
10907276-C-A **
10935531-A-AAAATC **
10967524-AT-A **
10971107-C-A **
10992306-A-ACTTCG **
10992519-T-C **
11000421-TC-T **
11000425-T-TA **
11000710-C-A **
11000808-C-A **
11004440-C-CGGATG **
11021087-T-A **
11028137-C-G **
11028156-A-C **
13347795-C-A 11192119-C-A **
13467952-C-A 11312276-C-A **
13468219-G-A 11312543-G-A **
13476896-CAA-C 11321220-CAA-C **
11646172-G-T **
11646176-A-T **
11669825-G-T FT46930 **
13895230-C-T 11774524-C-T **
13919311-G-T 11798605-G-T **
13975937-T-G 11855231-T-G **
14167939-C-G 12047233-C-G **
14383504-C-T 12262800-C-T **
14495675-G-T 12383872-G-T **
14592081-C-A 12480281-C-A **
14605944-G-T 12494146-G-T **
14779664-A-G 12667734-A-G **
14880372-G-A 12768442-G-A **
14965432-C-A 12853507-C-A **
15536394-C-A 13424514-C-A **
15740528-G-A 13628648-G-A **
15762053-A-T 13650173-A-T **
16001154-C-A 13889274-C-A **
16008198-A-G 13896318-A-G **
16011243-C-A 13899363-C-A **
16474722-T-G 14362842-T-G **
16683902-C-A 14572022-C-A **
17006203-C-A 14894323-C-A **
17367509-G-T 15255629-G-T **
17485852-C-A 15373972-C-A **
17657375-T-C 15545495-T-C **
17951603-C-A 15839723-C-A **
18158555-T-A 16046675-T-A **
18192511-C-A 16080631-C-A **
19168488-C-A 17056608-C-A **
19429927-C-A 17318047-C-A **
19524490-C-A 17412610-C-A **
19530396-A-T 17418516-A-T **
19544132-C-A 17432252-C-A **
19673884-T-G 17562004-T-G P5_Prx **
20101779-G-T 17989899-G-T P5_Dst **
20473625-TGATGATGA-T 18311739-TGATGATGA-T P5_Dst **
21065896-G-A 18904010-G-A **
21183632-G-A 19021746-G-A **
21285501-C-A 19123615-C-A **
21986380-C-A 19824494-C-A **
22133886-T-G 19972000-T-G **
22166714-C-A 20004828-C-A **
22367859-G-T 20205973-G-T DYZ19 **
22367862-G-T 20205976-G-T DYZ19 **
22694432-A-T 20532546-A-T **
22824942-T-C 20663056-T-C **
23059721-C-A 20897835-C-A **
23849727-A-T 21687841-A-T **
24373075-CT-C 22226928-CT-C **
26113126-C-A 23966979-C-A P1_Y1 **
27399292-G-A 25253145-G-A P1_g3 **
28033155-T-G 25887008-T-G P1_Y2 **
28402129-A-C 26255982-A-C P1_gr2 **
28474519-C-A 26328372-C-A **
28653272-C-T 26507125-C-T **
27503-G-A **
13484461-T-A 11328785-T-A ***
58990042-G-A 56843895-G-A ***
13483298-C-T 11327622-C-T ***
58982491-C-CA,G 56836344-C-CA,G ***
14926462-CAAAAAAA-C 12814527-CAAAAAAA-C 26×A***
5869966-G-GTT 6001925-G-GTT 15×T***
10887959-T-A ***
13811179-G-GAATTT 11690473-G-GAATTT ***
13811196-A-CGGGG 11690490-A-CGGGG ***
9777507-CAAAAAAA-C 9939898-CAAAAAAA-C 17×A***
56830529-CCATTGCATTCTGCTGAATTC-C,CCATTGCATTCCATTGAATTT ***
21738438-C-A 19576552-C-A ***
16786213-CTT-C,CTTT 14674333-CTT-C,CTTT 22×T***
8398840-CA-C,CAA 8530799-CA-C,CAA 17×A***
56850754-C-CT ***
15498664-C-A 13386784-C-A ***
56839649-G-T ***
10657393-T-G ***
7994261-C-A 8126220-C-A ***
18189471-C-A 16077591-C-A ***
10693919-C-A ***
15395071-C-A 13283191-C-A ***
2840099-CAAAA-C,CAA 2972058-CAAAA-C,CAA 20×A***
5073599-A-G 5205558-A-G ***
7145080-C-T 7277039-C-T ***
8801361-AGAAGGAAG-A,AGAAG 8933320-AGAAGGAAG-A,AGAAG 6×GAAG***
10657359-C-G ***
10768576-A-C,G ***
14339560-C-A 12218855-C-A ***
19071577-C-A 16959697-C-A ***
21092119-C-A 18930233-C-A ***
22325438-T-C 20163552-T-C DYZ19 ***
22325437-GT-G 20163551-GT-G DYZ19 ***
22974116-CA-C,CAAA 20812230-CA-C,CAAA 24×A***
56832059-ACTCCACCCCACTCCAC-A,ACTCCAC ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.