Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z41150

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
431469
22277813-G-T 20115927-G-T BY215751 DYZ19 A*
16642772-A-T 14530892-A-T YYA*
9124293-C-G 9286684-C-G YA*
20049017-A-G 17937137-A-G P5_Prx A*
20632583-A-G 18470697-A-G P4_Prx A*
22290966-T-G 20129080-T-G DYZ19 A*
22318669-G-T 20156783-G-T DYZ19 A*
25863827-C-T 23717680-C-T P1_Y1 A*
26229594-G-A 24083447-G-A P1_Y1 A*
28817517-T-G 26671370-T-G A*
22467038-T-A 20305152-T-A Z2668 PF3830 DYZ19 +
22480368-C-T 20318482-C-T Y16884A8029 DYZ19 +
2912115-T-C 3044074-T-C BY57275 YY+
6763171-T-C 6895130-T-C BY61154 YY+
7693696-T-A 7825655-T-A BY66967 YY+
7893169-C-T 8025128-C-T BY68554 YY+
8764951-A-G 8896910-A-G BY75723 YY+
9759242-A-G 9921633-A-G BY80828 Y+
9842347-C-T 10004738-C-T BY81359 YY+
9846802-T-C 10009193-T-C BY81397 YY+
14342814-C-T 12222109-C-T BY95077 YY+
14869637-C-T 12757707-C-T BY98117 YY+
15040837-C-G 12928927-C-G BY99356 YY+
15065276-T-C 12953368-T-C BY99530 YY+
16403396-C-A 14291516-C-A BY107526 YY+
17015616-A-T 14903736-A-T BY111752 YY+
17513007-A-G 15401127-A-G BY115366 YY+
17846070-A-G 15734190-A-G BY117766 YY+
18084919-C-T 15973039-C-T BY119847 YY+
18422334-G-T 16310454-G-T BY121899 P6_Gap +
18638148-G-A 16526268-G-A BY122758 YY+
18912542-AT-A 16800662-AT-A +
19127409-G-A 17015529-G-A BY126540 YY+
21301426-C-T 19139540-C-T BY55233 YY+
21387420-C-T 19225534-C-T BY132502 YY+
21456998-G-A 19295112-G-A BY133056 YY+
21756975-CTA-C 19595089-CTA-C +
21896053-T-C 19734167-T-C BY136285 YY+
22960394-A-G 20798508-A-G BY142055 YY+
23146569-G-A 20984683-G-A BY143342 YY+
23297282-C-T 21135396-C-T BY144411 YY+
23839018-G-C 21677132-G-C BY148221 Y+
23840197-A-G 21678311-A-G BY148236 Y+
24361495-T-C 22215348-T-C BY149339 +
28770776-A-G 26624629-A-G BY151124 Y+
22230425-C-A 20068539-C-A BY184356 DYZ19 *
22277135-G-A 20115249-G-A FGC47321 DYZ19 *
11014379-C-G *
11014392-C-T *
11014402-C-T *
11014378-A-T *
22235436-C-T 20073550-C-T BY44869 DYZ19 *
22447425-T-C 20285539-T-C DYZ19 *
17947045-T-C 15835165-T-C PR2703 **
2888825-C-T 3020784-C-T Z32053 **
13484675-C-A 11328999-C-A **
16288096-T-A 14176216-T-A S2006 M12465 **
7224877-T-C 7356836-T-C FT303486 **
15065874-G-T 12953966-G-T **
19409420-C-A 17297540-C-A **
21773695-AAAT-A 19611809-AAAT-A 5×AAT**
28781419-C-A 26635272-C-A **
14033885-C-A 11913179-C-A **
13472232-AC-A 11316556-AC-A **
10826205-A-G **
24870886-C-A 22724739-C-A IR1_R **
11025897-C-T **
11025907-C-T **
11025910-C-T **
14970258-CT-C 12858333-CT-C 10×T**
10964744-A-C **
21253774-C-CA 19091888-C-CA 9×A**
13472078-C-A 11316402-C-A **
15280825-C-A 13168924-C-A **
10959774-C-T **
10780475-C-T **
10850611-A-G **
10850621-T-A **
10850635-C-T **
13480566-C-CA 11324890-C-CA **
13480585-G-C 11324909-G-C **
13480592-G-T 11324916-G-T **
13480601-C-A 11324925-C-A **
13480607-T-A 11324931-T-A **
13480626-T-A 11324950-T-A **
10967538-C-T **
17947050-C-T 15835170-C-T **
10967512-C-G **
10964742-C-T **
10964746-C-G **
10967529-A-T **
5199651-C-A 5331610-C-A **
22079852-C-A 19917966-C-A **
21187327-T-G 19025441-T-G **
19298936-C-A 17187056-C-A **
16904730-GA-G 14792850-GA-G **
10821479-C-T **
13958801-C-A 11838095-C-A **
10950983-G-T **
10669442-TC-T **
10987179-T-G **
10782744-C-A **
13484651-C-T 11328975-C-T **
13484653-G-C 11328977-G-C **
13484683-C-G 11329007-C-G **
13484702-A-T 11329026-A-T **
17141805-C-A 15029925-C-A **
11025887-A-C **
10950985-A-T **
10950990-C-T **
10789841-C-T **
10789855-C-T **
10789860-C-T **
10846806-C-A **
6646089-C-A 6778048-C-A **
10997512-C-T **
10950946-CCTTCA-C **
10959762-G-C **
10959794-G-C **
10859637-C-T **
10744257-CAT-C **
21428676-C-A 19266790-C-A **
10689125-C-G **
10691391-C-A **
10797773-T-A **
10824184-T-C **
10799595-C-T **
10799600-C-T **
10799613-TCCACTCC-T **
10799622-TTCC-T **
9605325-G-GTA 9767716-G-GTA IR3_Prx **
10782725-T-A **
23054258-G-GA 20892372-G-GA 9×A**
10846811-C-G **
10826219-T-G **
25866383-G-T 23720236-G-T P1_Y1 **
10896396-T-G **
10682678-C-A **
21551430-G-T 19389544-G-T **
10959771-T-G **
9310532-G-T 9472923-G-T **
10789832-C-CATCAT **
7923683-C-A 8055642-C-A **
10748908-A-T **
10748909-T-C **
10748913-A-T **
10748927-T-A **
10748936-ACCCTC-A **
15410885-C-A 13299005-C-A **
7764599-C-A 7896558-C-A **
17598953-AT-A 15487073-AT-A 9×T**
13723034-A-C 11567358-A-C **
13723036-T-G 11567360-T-G **
11030511-C-A **
10824150-TC-T **
10860828-C-A **
10677053-T-TTC **
15579650-C-A 13467770-C-A **
10677867-C-A **
9013027-C-T 9175418-C-T A522 **
15392532-C-A 13280652-C-A **
14203414-G-T 12082708-G-T **
21902236-C-A 19740350-C-A **
10845643-T-C **
10846787-C-G FT433892 **
10846821-G-A **
10846845-C-A **
10846862-CCATTT-C **
10950957-A-T **
10950963-C-A **
18090311-C-A 15978431-C-A **
14506823-C-A 12395028-C-A **
10691384-T-A **
10773506-C-A **
4136522-C-A 4268481-C-A **
10689107-C-A **
56844575-C-A **
10959747-C-CTTCAT **
10959772-T-C **
10821489-A-C FT91797 **
10689108-C-A **
10689136-T-A **
17367687-C-A 15255807-C-A **
9140119-C-A 9302510-C-A **
10876850-G-T **
7298857-G-A 7430816-G-A **
22997426-C-A 20835540-C-A **
7853116-C-A 7985075-C-A **
7572854-C-A 7704813-C-A **
56848837-G-A **
15423848-G-T 13311968-G-T **
21444477-T-G 19282591-T-G **
14784738-C-A 12672808-C-A **
2783638-C-A 2915597-C-A **
8403306-C-A 8535265-C-A **
23327296-C-CTT 21165410-C-CTT 11×T**
10782758-C-T **
10782785-C-G **
10782788-C-G **
10782804-A-C **
21105485-C-A 18943599-C-A **
18929026-C-A 16817146-C-A **
10796581-C-A **
17537895-C-A 15426015-C-A **
10764512-TC-T **
17013314-C-A 14901434-C-A **
10843749-C-A **
14225280-C-A 12104574-C-A **
7252271-T-G 7384230-T-G **
5666781-CA-C 5798740-CA-C 10×A**
10880432-C-A **
14295150-C-A 12174444-C-A **
9044120-C-A 9206511-C-A **
15333773-G-T 13221891-G-T **
10744241-C-CA **
14485247-G-T 12364516-G-T **
18937559-G-T 16825679-G-T **
13621146-C-A 11465470-C-A **
14101414-C-A 11980708-C-A Y10628 **
18547265-C-A 16435385-C-A **
9979963-C-A 10142354-C-A **
16075397-C-A 13963517-C-A **
17605567-C-A 15493687-C-A **
10797754-T-C **
13213538-C-A 11057862-C-A **
10744214-C-A **
16860749-C-CAA 14748869-C-CAA 24×A**
15280707-C-A 13168806-C-A **
13199278-C-A 11043602-C-A **
10824232-C-G **
15449892-CTTTTTTT-C 13338012-CTTTTTTT-C 21×T**
10846756-A-T **
10846757-G-A **
10846758-T-C **
10846766-T-A **
10846769-TC-T **
10846775-T-TC **
10846779-A-T **
10896318-C-A **
10924394-T-C **
27595943-C-A 25449796-C-A P1_Y2 **
10859687-C-T **
10973282-C-A **
10896387-G-A **
17056028-C-A 14944148-C-A **
18911050-C-A 16799170-C-A **
13228116-C-A 11072440-C-A **
10826198-T-C **
7195356-C-A 7327315-C-A **
17591414-C-A 15479534-C-A **
15701151-C-A 13589271-C-A **
13441878-C-A 11286202-C-A **
2835708-A-C 2967667-A-C **
2835713-A-C 2967672-A-C **
2861432-G-A 2993391-G-A **
2926342-C-A 3058301-C-A **
2979657-C-A 3111616-C-A **
3110526-C-A 3242485-C-A **
3128217-G-A 3260176-G-A **
3388723-C-A 3520682-C-A **
3575710-C-A 3707669-C-A **
3994841-C-A 4126800-C-A **
4081539-C-A 4213498-C-A **
4081665-A-T 4213624-A-T **
4082122-C-A 4214081-C-A **
4930927-A-T 5062886-A-T **
5102421-A-C 5234380-A-C **
5125773-C-A 5257732-C-A **
5165799-G-T 5297758-G-T **
5679058-A-C 5811017-A-C **
5708774-C-A 5840733-C-A **
6328282-A-T 6460241-A-T IR3_Dst **
6328306-C-CAA 6460265-C-CAA IR3_Dst **
6347548-T-C 6479507-T-C **
6694979-C-A 6826938-C-A **
6861397-C-A 6993356-C-A **
6917981-C-A 7049940-C-A **
6919916-A-T 7051875-A-T **
6977038-C-A 7108997-C-A **
7098095-C-A 7230054-C-A **
7131348-T-G 7263307-T-G **
7139165-G-A 7271124-G-A **
7223474-T-A 7355433-T-A **
7223475-AG-A 7355434-AG-A **
7247987-A-T 7379946-A-T **
7252270-C-T 7384229-C-T **
7252275-G-A 7384234-G-A **
7708784-G-A 7840743-G-A **
7921532-G-C 8053491-G-C **
7938827-C-A 8070786-C-A **
8062108-C-A 8194067-C-A **
8353217-C-A 8485176-C-A **
8600022-TC-A 8731981-TC-A **
8720458-G-T 8852417-G-T **
9120427-A-G **
9013023-G-A 9175414-G-A **
9013036-C-T 9175427-C-T **
9141705-C-T 9304096-C-T **
9424491-G-A 9586882-G-A **
9891720-C-A 10054111-C-A **
9947398-G-T 10109789-G-T **
10040620-T-G 10203011-T-G **
10656886-T-C **
10672126-T-TTACGA **
10691351-C-G **
10744216-C-T **
10750388-C-A **
10753759-C-A **
10757190-A-G **
10757939-C-G **
10761203-A-T **
10770373-T-TTCATC **
10782735-A-T **
10796761-C-A FT431606 **
10797721-C-A **
10797768-A-T **
10797776-C-G **
10797779-C-T **
10824242-C-A **
10825324-C-T **
10826210-C-A **
10826232-A-ACTCAG **
10826258-T-A **
10859637-C-CTATAT **
10859647-C-T **
10896390-C-T **
10898860-C-A **
10916852-C-A **
10926172-T-A **
10927784-C-T **
10930281-T-G **
10944332-T-A **
10951696-A-C **
10952194-C-A **
10952638-T-C **
10961104-T-C **
10967492-C-T **
10967523-C-CACTTG **
10971877-C-A **
10971894-T-G **
10977783-T-C **
10992587-C-A **
10996682-C-A **
11016253-T-A **
11018326-T-A **
11033248-CT-C **
13409651-C-A 11253975-C-A **
13480576-C-A 11324900-C-A **
13493542-C-A 11337866-C-A **
13577194-G-T 11421518-G-T **
13584228-C-A 11428552-C-A **
13676042-G-A 11520366-G-A BY210856 **
13859515-G-A 11738809-G-A **
13886127-A-G 11765421-A-G **
13976380-C-A 11855674-C-A **
14025637-A-AAG 11904931-A-AAG **
14080035-GATATATATATATATATATATAT-G 11959329-GATATATATATATATATATATAT-G 29×AT**
14134106-G-T 12013400-G-T **
14315623-C-A 12194917-C-A **
14373604-C-T 12252900-C-T **
14455025-C-A 12334298-C-A **
14458026-G-A 12337299-G-A **
14506767-C-A 12394972-C-A **
14572976-A-T 12461176-A-T **
14577965-T-C 12466165-T-C **
14592029-TA-T 12480229-TA-T **
14743662-C-A 12631731-C-A **
14766501-G-T 12654570-G-T **
14785678-C-A 12673748-C-A **
14925889-T-C 12813954-T-C **
15163442-C-T 13051528-C-T **
15178281-C-A 13066367-C-A **
15288550-A-T 13176649-A-T **
15288554-A-T 13176653-A-T **
15391160-A-G 13279280-A-G **
15424333-A-C 13312453-A-C **
15530018-C-A 13418138-C-A **
15888434-C-A 13776554-C-A **
16063156-A-C 13951276-A-C **
16063193-T-TTG 13951313-T-TTG **
16519508-C-A 14407628-C-A **
16621674-G-T 14509794-G-T **
16746275-C-A 14634395-C-A **
16865076-T-G 14753196-T-G **
16913440-A-G 14801560-A-G **
17159075-C-A 15047195-C-A **
17251054-C-A 15139174-C-A **
17455652-T-A 15343772-T-A **
17478334-T-C 15366454-T-C **
17549709-A-G 15437829-A-G **
17551594-C-A 15439714-C-A **
17825336-C-A 15713456-C-A **
17884723-C-A 15772843-C-A **
17885783-G-T 15773903-G-T FT30669 **
17947053-G-A 15835173-G-A **
17961171-C-A 15849291-C-A **
18184937-C-A 16073057-C-A FGC61380 **
18660879-T-C 16548999-T-C **
18993299-C-A 16881419-C-A **
19706119-T-TCAC 17594239-T-TCAC P5_Prx **
19760919-C-A 17649039-C-A P5_Prx **
19976788-C-A 17864908-C-A P5_Prx **
20228159-T-A 18066273-T-A P5_Dst **
20228171-T-A 18066285-T-A P5_Dst **
20228212-T-A 18066326-T-A P5_Dst **
20830376-A-C 18668490-A-C P4_Gap **
20899905-C-A 18738019-C-A P4_Dst **
21009423-G-T 18847537-G-T P4_Dst **
21086132-C-A 18924246-C-A **
21253922-G-T 19092036-G-T **
21266037-C-A 19104151-C-A **
21296556-T-G 19134670-T-G **
21373383-C-A 19211497-C-A **
21534689-C-A 19372803-C-A **
21658626-C-A 19496740-C-A **
21692011-G-A 19530125-G-A **
21713378-G-T 19551492-G-T **
22055536-G-A 19893650-G-A **
22113474-C-A 19951588-C-A **
22257974-A-C 20096088-A-C DYZ19 **
22578255-C-A 20416369-C-A **
22617355-A-G 20455469-A-G **
22659307-A-T 20497421-A-T **
22720622-C-A 20558736-C-A **
23810540-A-T 21648654-A-T **
23824663-A-G 21662777-A-G **
23829311-C-G 21667425-C-G **
23955112-G-T 21808965-G-T **
25982383-C-A 23836236-C-A P1_Y1 **
25982396-C-A 23836249-C-A P1_Y1 **
25982403-G-T 23836256-G-T P1_Y1 **
26096334-A-G 23950187-A-G BY209120 P1_Y1 **
26358705-A-T 24212558-A-T P1_Y1 **
27595884-C-A 25449737-C-A P1_Y2 **
27713599-C-A 25567452-C-A P1_Y2 **
27920188-G-C 25774041-G-C P1_Y2 **
27920189-T-A 25774042-T-A P1_Y2 **
56836577-C-A **
56843727-C-A **
7163779-A-G 7295738-A-G ***
7163784-T-G 7295743-T-G FT254465 ***
7163798-A-G 7295757-A-G ***
7163809-G-A 7295768-G-A ***
7163811-A-G 7295770-A-G ***
8716918-A-AT 8848877-A-AT 10×T***
18568172-C-A 16456292-C-A ***
7163813-C-G 7295772-C-G ***
22737230-TC-T 20575344-TC-T ***
7156931-C-A 7288890-C-A Y83476 ***
14453728-G-A 12333001-G-A ***
10661188-ACTCCATTCCA-A,ACTCCATTCCC ***
18900560-C-A 16788680-C-A ***
10961120-G-C ***
10899995-C-T ***
11005523-CCTCC-A,CATGACACTCC ***
11665675-C-A ***
10756179-C-A ***
13255097-C-A 11099421-C-A ***
6792628-CAA-C,CA 6924587-CAA-C,CA 18×A***
18754669-C-A 16642789-C-A ***
13719503-T-C 11563827-T-C ***
13458698-C-A 11303022-C-A ***
23380881-C-A 21218995-C-A ***
21172158-G-T 19010272-G-T ***
10795917-ACTGTG-A ***
2912927-AT-A 3044886-AT-A 9×T***
3440092-C-A 3572051-C-A ***
6675791-T-C 6807750-T-C ***
6755313-C-A 6887272-C-A ***
7698265-C-A 7830224-C-A ***
9195534-C-T 9357925-C-T ***
9503681-G-T 9666072-G-T ***
9647599-G-T 9809990-G-T IR3_Prx ***
9893181-C-A 10055572-C-A ***
10783816-C-T ***
10899039-C-CAACTG ***
10899047-T-G ***
10899061-A-G ***
11005169-T-A ***
13446531-ATTCCATTCCATTCCATTC-A,ACTCCATTCTATTCCATTC 11290855-ATTCCATTCCATTCCATTC-A,ACTCCATTCTATTCCATTC ***
13453163-C-T 11297487-C-T ***
13478256-CGAG-C,CGCA 11322580-CGAG-C,CGCA ***
13485414-C-A 11329738-C-A ***
14099315-C-A 11978609-C-A ***
14339582-T-C 12218877-T-C ***
14339951-C-A 12219246-C-A ***
14788674-C-A 12676745-C-A ***
12730473-ATTTT-A,AT 21×T***
16076928-C-A 13965048-C-A ***
16084764-A-G 13972884-A-G ***
16767180-C-A 14655300-C-A ***
17091292-C-A 14979412-C-A ***
17885817-C-T 15773937-C-T ***
17896203-C-A 15784323-C-A FT291241 ***
18233419-G-T 16121539-G-T ***
18267083-C-A 16155203-C-A ***
18616888-C-A 16505008-C-A ***
19031637-T-C 16919757-T-C ***
19286163-C-A 17174283-C-A ***
22724520-TATTC-T 20562634-TATTC-T ***
23776951-C-A 21615065-C-A ***
28757528-A-G 26611381-A-G ***
56837347-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.