Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > FGC11134 > A353 > Z16250 > A114 > CTS4466/S1136 > S1115 > A541 > S1121 > Z16251 > Z18170 > FGC29280 > S1126 > A726

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
353692
6276427-T-G 6408386-T-G IR3_Dst A*
6109948-T-TA 6241907-T-TA 10×AA*
19685856-A-AT 17573976-A-AT P5_Prx 9×TA*
18347799-C-G 16235919-C-G P6_Prx A*
16115816-A-AT 14003936-A-AT P8_Prx 9×TA*
24600670-C-CA 22454523-C-CA P3_t2 16×AA*
9381634-T-C 9544025-T-C BY44591 Y+
22581735-A-C 20419849-A-C BY44759 YY+
7272688-C-G 7404647-C-G BY44567 YY+
17054936-A-T 14943056-A-T ZS3220 YY+
23491703-T-A 21329817-T-A BY44775 YY+
16438409-A-G 14326529-A-G BY44649 YY+
17426011-CCTTTTCTTTTCTTTTCTTTT-C 15314131-CCTTTTCTTTTCTTTTCTTTT-C 11×CTTTT*
10888472-A-C **
10877218-C-A **
10880295-A-C **
58981035-G-A 56834888-G-A **
10946069-C-T **
10980555-TC-T **
11003738-C-CA **
11032965-C-T **
13222004-A-AG 11066328-A-AG **
13322384-T-A 11166708-T-A **
13463135-C-A 11307459-C-A **
13488912-C-A 11333236-C-A **
10845737-A-C **
10789261-A-T **
10845563-T-G **
10671678-G-A **
9936412-C-A 10098803-C-A **
9943864-A-T 10106255-A-T **
9954781-G-T 10117172-G-T **
10016759-A-G 10179150-A-G **
10046170-C-A 10208561-C-A **
10079220-T-C 10241611-T-C **
10658592-C-T **
10677750-A-G **
10822633-T-G **
10682637-C-A **
10753103-C-A **
10759980-C-T **
10759994-C-CTACTA **
10760024-C-G **
10766439-C-A **
10768978-C-A **
10820724-C-A **
13505086-T-G 11349410-T-G **
13696296-C-T 11540620-C-T **
13564594-T-A 11408918-T-A **
14301613-A-T 12180907-A-T **
14015657-A-T 11894951-A-T **
14052765-G-A 11932059-G-A **
14065668-T-C 11944962-T-C **
14113429-T-G 11992723-T-G **
14240449-A-G 12119743-A-G **
14245131-C-T 12124425-C-T **
14379395-C-A 12258691-C-A **
13936506-A-G 11815800-A-G **
14431543-T-G 12310816-T-G **
14458526-C-A 12337799-C-A **
14844372-G-C 12732438-G-C **
14933732-C-A 12821797-C-A **
15011795-G-A 12899883-G-A **
15049388-T-A 12937479-T-A **
15113525-C-T 13001612-C-T **
13963337-T-C 11842631-T-C **
13926403-C-A 11805697-C-A **
13578022-G-T 11422346-G-T **
11647234-T-A **
13608789-G-C 11453113-G-C **
9542061-T-TGC 9704452-T-TGC IR3_Prx **
13696321-A-C 11540645-A-C **
13696325-A-T 11540649-A-T **
13697649-A-C 11541973-A-C **
13697679-A-C 11542003-A-C **
11647235-T-C **
13817454-A-G 11696748-A-G **
11647236-T-G **
11659819-CTCGAT-C **
11663536-C-A **
13798662-C-A 11677956-C-A **
13801235-A-G 11680529-A-G **
13805201-C-A 11684495-C-A **
13809463-C-A 11688757-C-A **
9934726-T-C 10097117-T-C **
9048090-C-G 9210481-C-G **
9474114-CA-C 9636505-CA-C **
7033320-A-T 7165279-A-T **
6780604-G-T 6912563-G-T **
6847876-A-T 6979835-A-T **
6881490-T-G 7013449-T-G **
7000286-G-C 7132245-G-C **
7008793-C-T 7140752-C-T **
7029844-T-G 7161803-T-G **
7101498-C-A 7233457-C-A **
6590545-A-T 6722504-A-T **
7110438-A-T 7242397-A-T **
7115512-C-T 7247471-C-T **
7163110-C-A 7295069-C-A **
7186825-G-T 7318784-G-T **
7190638-C-A 7322597-C-A **
7211414-C-A 7343373-C-A **
7221731-C-A 7353690-C-A **
6606433-T-C 6738392-T-C **
6461520-TCTAAAGCTTA-T 6593479-TCTAAAGCTTA-T **
7331149-A-C 7463108-A-C **
5412463-G-T 5544422-G-T **
5046099-G-T 5178058-G-T **
5195819-G-T 5327778-G-T **
5242410-G-T 5374369-G-T **
5242414-G-A 5374373-G-A **
5267466-A-C 5399425-A-C **
5300594-T-A 5432553-T-A **
5760794-C-A 5892753-C-A **
6435133-T-C 6567092-T-C **
5845016-C-A 5976975-C-A **
5906017-GC-G 6037976-GC-G **
5993225-G-T 6125184-G-T **
6021080-C-A 6153039-C-A **
6205631-A-G 6337590-A-G IR3_Dst **
6242656-G-T 6374615-G-T IR3_Dst **
6314191-C-A 6446150-C-A IR3_Dst **
7282115-C-A 7414074-C-A **
7353209-G-A 7485168-G-A **
9462253-G-T 9624644-G-T **
8976974-A-G 9139365-A-G **
8674155-C-A 8806114-C-A **
8760581-G-A 8892540-G-A **
8911528-A-G 9043487-A-G **
8912514-T-C 9044473-T-C **
8913038-C-G 9044997-C-G **
8976973-C-T 9139364-C-T **
8976981-C-T 9139372-C-T **
8409233-G-A 8541192-G-A **
8976989-G-GC 9139380-G-GC **
8977004-T-A 9139395-T-A **
9040925-A-ATATATATATAT 9203316-A-ATATATATATAT 17×AT**
9048083-C-G 9210474-C-G **
15221319-C-T 13109405-C-T **
9048124-T-G 9210515-T-G **
9314377-C-A 9476768-C-A **
8409265-A-G 8541224-A-G **
8353104-C-A 8485063-C-A **
7426766-C-A 7558725-C-A **
7939318-A-G 8071277-A-G **
7451163-A-T 7583122-A-T IR1_L **
7451167-C-A 7583126-C-A IR1_L **
7577720-A-G 7709679-A-G **
7707716-C-A 7839675-C-A **
7753126-C-G 7885085-C-G **
7828906-C-T 7960865-C-T **
7969318-G-A 8101277-G-A **
8344418-A-T 8476377-A-T **
8085457-A-G 8217416-A-G **
8085494-C-A 8217453-C-A **
8090802-C-A 8222761-C-A **
8094380-T-A 8226339-T-A **
8109772-C-A 8241731-C-A **
8216565-G-A 8348524-G-A **
8343016-C-A 8474975-C-A **
15157548-G-T 13045635-G-T **
15333968-C-A 13222086-C-A **
15278887-A-G 13166986-A-G **
21651701-GCCTGT-G 19489815-GCCTGT-G **
20800157-G-T 18638271-G-T P4_Prx **
21234789-C-A 19072903-C-A **
21254078-G-T 19092192-G-T **
21387279-G-A 19225393-G-A **
21468106-A-C 19306220-A-C **
21490978-CA-C 19329092-CA-C **
21698371-C-G 19536485-C-G **
20699836-T-C 18537950-T-C P4_Prx **
21862244-G-A 19700358-G-A **
21923961-C-G 19762075-C-G **
22058665-T-C 19896779-T-C **
22091260-C-A 19929374-C-A **
22100939-A-T 19939053-A-T **
22541062-G-C 20379176-G-C **
22541067-A-C 20379181-A-C **
20757663-T-TA 18595777-T-TA P4_Prx **
20692965-CAAAA-C 18531079-CAAAA-C P4_Prx 19×A**
22811648-A-T 20649762-A-T **
19476656-CA-C 17364776-CA-C **
19102824-T-G 16990944-T-G **
19132595-C-A 17020715-C-A **
19300460-G-T 17188580-G-T **
19425046-G-A 17313166-G-A **
19435801-C-A 17323921-C-A **
19461487-C-A 17349607-C-A BY55205 **
19505172-A-T 17393292-A-T **
20654959-G-T 18493073-G-T P4_Prx **
19505175-A-T 17393295-A-T **
19510339-C-A 17398459-C-A **
19546099-C-A 17434219-C-A **
19612058-A-AAG 17500178-A-AAG P5_Prx **
19895431-T-C 17783551-T-C P5_Prx **
19965495-CG-C 17853615-CG-C P5_Prx **
20340735-A-C 18178849-A-C P5_Dst **
22591354-T-AA 20429468-T-AA **
22845955-T-C 20684069-T-C **
19062114-A-G 16950234-A-G **
28622702-C-A 26476555-C-A **
25967439-A-G 23821292-A-G P1_Y1 **
27263208-G-C 25117061-G-C P1_g3 **
27484258-A-ATCTTTCCT 25338111-A-ATCTTTCCT P1_Y2 19×TCTT**
27638802-A-AC 25492655-A-AC P1_Y2 **
27864419-C-T 25718272-C-T P1_Y2 **
28499454-C-A 26353307-C-A **
28658288-C-A 26512141-C-A **
24880276-C-G 22734129-C-G g1 **
28666016-C-G 26519869-C-G **
28687951-A-G 26541804-A-G **
28716368-T-C 26570221-T-C **
28745241-A-G 26599094-A-G **
28808610-G-C 26662463-G-C **
56827221-G-C **
56831036-C-A **
25967423-C-G 23821276-C-G P1_Y1 **
24553408-A-C 22407261-A-C P3_t2 **
23036047-C-A 20874161-C-A **
23425273-G-T 21263387-G-T **
23138243-C-A 20976357-C-A **
23200718-C-A 21038832-C-A **
23286273-C-A 21124387-C-A **
23341746-C-A 21179860-C-A **
23355142-C-A 21193256-C-A **
23396056-C-A 21234170-C-A **
23468570-C-T 21306684-C-T **
24458687-C-A 22312540-C-A **
23468585-T-C 21306699-T-C **
23475661-C-A 21313775-C-A **
23476247-A-C 21314361-A-C **
23510513-C-A 21348627-C-A **
23833032-C-T 21671146-C-T **
24402332-C-A 22256185-C-A **
24402412-G-A 22256265-G-A **
19073863-T-C 16961983-T-C **
19051958-C-A 16940078-C-A **
15281547-T-A 13169646-T-A **
16514455-C-A 14402575-C-A **
16278482-C-G 14166602-C-G **
16363981-G-C 14252101-G-C **
16399977-G-C 14288097-G-C **
16427779-T-G 14315899-T-G **
16432106-T-A 14320226-T-A **
16437988-C-A 14326108-C-A **
16656201-T-C 14544321-T-C **
16211091-T-G 14099211-T-G **
16696147-G-A 14584267-G-A **
16720748-G-T 14608868-G-T **
16843218-T-G 14731338-T-G **
16968113-C-A 14856233-C-A **
16981433-G-A 14869553-G-A **
17014502-T-C 14902622-T-C **
17056762-C-A 14944882-C-A **
16275954-A-G 14164074-A-G **
16176487-C-A 14064607-C-A **
17137064-T-C 15025184-T-C **
15775743-T-A 13663863-T-A **
15333523-C-T 13221641-C-T **
4900158-A-C 5032117-A-C **
15357908-C-A 13246027-C-A **
15364616-A-G 13252736-A-G **
15580415-C-A 13468535-C-A **
15741594-TTACA-T 13629714-TTACA-T **
15801706-A-G 13689826-A-G **
16151806-A-ATTATAAATAT 14039926-A-ATTATAAATAT P8_Dst **
15901278-A-T 13789398-A-T **
15906416-A-G 13794536-A-G **
15936928-G-A 13825048-G-A **
16021086-A-G 13909206-A-G **
16050029-G-A 13938149-G-A **
16078370-C-A 13966490-C-A **
16148184-T-TTC 14036304-T-TTC P8_Dst **
17081234-T-TAA 14969354-T-TAA **
17137074-A-T 15025194-A-T **
19031433-A-G 16919553-A-G **
18286748-C-A 16174868-C-A P6_Prx **
17997503-T-C 15885623-T-C P7_Gap **
18085423-G-A 15973543-G-A **
18135781-G-T 16023901-G-T **
18154478-T-C 16042598-T-C **
18154560-T-G 16042680-T-G **
18156542-T-C 16044662-T-C **
18427676-T-A 16315796-T-A P6_Dst **
17826911-C-A 15715031-C-A **
18606328-C-A 16494448-C-A **
18673714-A-C 16561834-A-C **
18908094-G-A 16796214-G-A **
18931780-T-C 16819900-T-C **
18948181-C-A 16836301-C-A **
18948220-C-A 16836340-C-A **
19000056-T-C 16888176-T-C **
17918838-A-T 15806958-A-T **
17784942-T-C 15673062-T-C **
17137076-T-A 15025196-T-A **
17497001-C-A 15385121-C-A **
17137089-A-C 15025209-A-C **
17137090-T-C 15025210-T-C **
17137092-C-T 15025212-C-T **
17137093-A-G 15025213-A-G **
17212432-A-G 15100552-A-G **
17380459-C-A 15268579-C-A **
17440239-T-C 15328359-T-C **
17501830-GA-G 15389950-GA-G **
17763943-C-A 15652063-C-A **
17519122-A-T 15407242-A-T **
17538058-C-A 15426178-C-A **
17580932-C-T 15469052-C-T 13×T**
17616960-G-A 15505080-G-A **
17616966-C-A 15505086-C-A 35×A**
17729373-C-A 15617493-C-A **
17740741-C-A 15628861-C-A **
4969196-C-T 5101155-C-T **
5586634-A-G 5718593-A-G **
4757732-G-C 4889691-G-C **
9040207-ATT-A 9202598-ATT-A 16×T**
13488868-C-A 11333192-C-A **
7208164-T-C 7340123-T-C **
7208161-G-C 7340120-G-C **
10809597-T-C **
10971255-C-CGGATG **
10971254-C-A **
10971241-A-T **
10971239-C-A **
10768969-A-G **
2784494-G-T 2916453-G-T **
28438188-CAA-C 26292041-CAA-C P1_gr2 31×A**
18050382-C-A 15938502-C-A **
16007974-G-T 13896094-G-T **
17860715-C-A 15748835-C-A **
28754469-C-A 26608322-C-A **
21766274-AACAC-A **
10986383-CCATAT-C **
7451294-CT-C 7583253-CT-C IR1_L 29×T**
8976982-A-G 9139373-A-G **
8976976-T-G 9139367-T-G **
8172719-G-T 8304678-G-T **
19924680-T-A 17812800-T-A P5_Prx **
10760464-G-T **
18959214-CAAAA-C 16847334-CAAAA-C 27×A**
11003743-C-A **
3602832-C-A 3734791-C-A **
19547672-C-A 17435792-C-A **
10808619-T-A **
10759970-C-T **
21149610-G-T 18987724-G-T **
14429269-C-A 12308544-C-A **
10682667-G-A **
10773117-T-G **
10792939-G-T **
14392897-C-A 12272193-C-A **
16624766-C-A 14512886-C-A **
10068694-A-T 10231085-A-T **
4703675-C-A 4835634-C-A **
10916424-G-T **
14079915-G-T 11959209-G-T **
10845585-T-A **
4094106-C-A 4226065-C-A **
17596429-C-A 15484549-C-A **
24406953-G-C 22260806-G-C **
7115518-T-G 7247477-T-G **
7115514-G-T 7247473-G-T **
10682591-C-A **
14560759-C-A 12448960-C-A **
10825653-G-T **
56845207-G-T **
10655039-C-A **
4757718-T-C 4889677-T-C **
17313716-C-A 15201836-C-A **
21974925-C-A 19813039-C-A **
6596056-C-A 6728015-C-A **
10759981-A-C **
16941515-C-A 14829635-C-A **
15866268-C-A 13754388-C-A 43×A**
13632069-C-A 11476393-C-A **
11022948-T-C **
7342283-C-A 7474242-C-A **
13488911-C-T 11333235-C-T **
11031418-C-A **
10682677-G-A **
20252776-C-T 18090890-C-T P5_Dst **
17425079-C-A 15313199-C-A **
13461088-A-G 11305412-A-G **
14761100-TGATAGATAGATA-T 12649169-TGATAGATAGATA-T 12×GATA**
6816713-CAAAAA-C 6948672-CAAAAA-C 19×A**
14695992-CA-C 12584058-CA-C 30×A**
16364058-C-CTATA 14252178-C-CTATA 27×TA**
5273214-C-CT 5405173-C-CT 23×T**
10059284-G-A 10221675-G-A **
17085721-C-CT 14973841-C-CT 20×T**
15424313-GAA-G 13312433-GAA-G 14×A**
17130400-CT-C 15018520-CT-C 21×T**
28798289-A-T 26652142-A-T **
3411690-CA-C 3543649-CA-C 30×A**
25296840-T-A 23150693-T-A P2_r1 12×A**
18703238-C-A 16591358-C-A **
18135749-A-G 16023869-A-G **
58978551-G-A 56832404-G-A **
19394059-CTTT-C 17282179-CTTT-C 37×T**
13971656-TCAGG-T 11850950-TCAGG-T 8×CAGG**
6410989-TAATA-T 6542948-TAATA-T **
5241125-T-C 5373084-T-C 10×TCCC**
10068701-C-A 10231092-C-A **
10068698-T-G 10231089-T-G **
10068695-A-T 10231086-A-T **
23952164-AAAT-A 21806017-AAAT-A 8×AAT**
17081268-AAT-A 14969388-AAT-A 9×AT**
17005654-C-G 14893774-C-G **
13297132-C-T 11141456-C-T **
10068734-A-G 10231125-A-G **
18966182-C-CTCCT 16854302-C-CTCCT 12×TCCT**
5535149-CTA-C 5667108-CTA-C 10×TA**
4630151-TTG-T 4762110-TTG-T 18×TG**
13468857-C-T 11313181-C-T **
13488821-C-A 11333145-C-A **
8016975-T-C 8148934-T-C **
10892554-A-T **
25333911-G-A 23187764-G-A P2_r1 **
7208152-T-C 7340111-T-C **
15475332-C-A 13363452-C-A **
28798299-G-A 26652152-G-A **
28798280-T-TTGAGA 26652133-T-TTGAGA **
18274948-GTATA-G 16163068-GTATA-G P6_Prx 8×TA**
10892568-C-T **
10688036-A-G **
19927002-A-C 17815122-A-C P5_Prx **
28517283-C-A 26371136-C-A **
28767812-C-A 26621665-C-A **
10669496-C-T **
10809591-T-A **
7306803-C-A 7438762-C-A **
10796149-T-C **
10669497-TC-T **
17310939-GTT-G 15199059-GTT-G 13×T**
8673749-G-T 8805708-G-T **
23468566-G-T 21306680-G-T **
10880268-C-A **
10880253-ATTCTGATCCG-A **
10880254-T-A **
10880246-C-T **
10880234-T-G **
10880228-T-A **
10682636-A-G **
11001485-A-T **
11001482-G-C **
28798302-T-G 26652155-T-G **
28798298-G-A 26652151-G-A **
17310926-C-A 15199046-C-A **
18812080-C-A 16700200-C-A **
17006703-C-A 14894823-C-A **
28732819-C-A 26586672-C-A **
10033695-C-A 10196086-C-A **
10858153-C-A **
3815080-G-T 3947039-G-T **
6165681-G-T 6297640-G-T IR3_Dst **
56832411-C-T **
13697705-C-A 11542029-C-A **
7451139-T-C 7583098-T-C IR1_L **
22520635-G-A 20358749-G-A **
10760267-C-A **
14366711-C-A 12246006-C-A **
13466012-C-T 11310336-C-T **
18856271-C-A 16744391-C-A **
17115005-C-A 15003125-C-A **
21136848-T-C 18974962-T-C **
17798912-C-A 15687032-C-A **
22520624-TA-T 20358738-TA-T **
15480348-C-A 13368468-C-A **
17503369-C-A 15391489-C-A **
10769015-T-C **
18838761-C-A 16726881-C-A **
15801709-A-G 13689829-A-G **
7418649-G-T 7550608-G-T **
10682614-A-T **
10682616-C-G **
28767170-C-A 26621023-C-A **
10769014-A-T **
10950389-T-TTGCAA **
17342856-C-A 15230976-C-A **
10951080-T-A **
4534049-G-A 4666008-G-A **
7008255-T-A 7140214-T-A **
8158863-C-A 8290822-C-A **
14000613-C-A 11879907-C-A **
10820909-C-A **
10799659-C-A **
4077721-C-A 4209680-C-A **
3659362-G-T 3791321-G-T **
3750603-A-C 3882562-A-C **
3750609-G-T 3882568-G-T **
3815046-G-C 3947005-G-C **
3815063-C-T 3947022-C-T **
3817361-C-A 3949320-C-A **
4083800-C-A 4215759-C-A **
3411711-A-C 3543670-A-C **
4205293-A-G 4337252-A-G **
4408862-C-A 4540821-C-A **
4441710-T-C 4573669-T-C **
4533349-C-A 4665308-C-A **
4568984-C-A 4700943-C-A **
4652086-A-G 4784045-A-G **
3411714-A-C 3543673-A-C **
3411700-A-C 3543659-A-C **
10759976-A-T **
2811441-C-A 2943400-C-A **
10983765-T-C **
16000995-A-G 13889115-A-G **
13329099-C-A 11173423-C-A **
20497572-CTTT-C 18335686-CTTT-C P5_Dst 30×T**
17666514-C-A 15554634-C-A **
2755475-T-A 2887434-T-A **
2817137-G-T 2949096-G-T **
3343763-T-C 3475722-T-C **
2865633-C-A 2997592-C-A **
2876903-C-A 3008862-C-A **
2892724-T-C 3024683-T-C **
3046399-C-A 3178358-C-A **
3061094-C-A 3193053-C-A **
3169127-C-A 3301086-C-A **
4177989-C-A 4309948-C-A **
7865964-C-A 7997923-C-A **
6040220-C-A 6172179-C-A **
6775994-C-A 6907953-C-A **
10768973-C-T **
21043903-C-A 18882017-C-A **
10789187-A-T **
3696588-G-T 3828547-G-T **
22996869-C-A 20834983-C-A **
5644650-C-A 5776609-C-A **
17012976-T-C 14901096-T-C **
16049930-A-G 13938050-A-G **
19677918-C-A 17566038-C-A P5_Prx **
10682671-C-T **
14180704-C-A 12059998-C-A **
7640933-C-A 7772892-C-A **
28761261-C-T 26615114-C-T **
8078439-G-T 8210398-G-T **
15542658-CAAAA-C 13430778-CAAAA-C 16×A**
23065656-C-A 20903770-C-A **
14124108-C-A 12003402-C-A **
16505079-C-A 14393199-C-A **
9438204-C-A 9600595-C-A **
10950399-T-A **
10769007-C-G **
16146545-C-A 14034665-C-A P8_Dst **
17500808-G-T 15388928-G-T **
22032588-C-A 19870702-C-A **
5755231-C-A 5887190-C-A **
7028718-C-A 7160677-C-A **
23459634-C-A 21297748-C-A **
10884729-C-G **
56845188-G-C **
7242584-C-A 7374543-C-A **
56845185-A-G **
56835733-A-T ***
56833365-C-G ***
14418203-GTA-G 12297478-GTA-G 8×TA***
14654118-C-A 12542183-C-A ***
14356956-C-A 12236251-C-A ***
16320394-CA-C 14208514-CA-C 10×A***
10029518-C-A 10191909-C-A ***
11032880-C-A ***
22948195-C-A 20786309-C-A ***
14415743-C-A 12295040-C-A ***
21464536-CAA-C 19302650-CAA-C 19×A***
58979593-A-ATCATT 56833446-A-ATCATT ***
58972149-T-A 56826002-T-A ***
13449240-T-C 11293564-T-C ***
13216747-C-A 11061071-C-A ***
17239290-T-TTATA 15127410-T-TTATA 17×TA***
5204641-C-CA 5336600-C-CA 22×A***
22135718-C-A 19973832-C-A ***
14875592-GTT-G 12763662-GTT-G 28×T***
13468322-C-G 11312646-C-G ***
11014499-CTCTAT-C ***
13451072-C-A 11295396-C-A ***
10669602-C-A ***
11014511-C-A BY84144 ***
13476863-T-A 11321187-T-A ***
13859410-G-T 11738704-G-T ***
25089872-C-A 22943725-C-A g1 ***
8666723-G-GT 8798682-G-GT 25×T***
13564629-C-A 11408953-C-A Z26066 ***
13460458-G-T 11304782-G-T ***
24673173-G-A 22527026-G-A BY31650 P3_b2 16×CA***
6757894-T-A 6889853-T-A ***
58978868-T-TTCCAC 56832721-T-TTCCAC ***
9789316-G-A 9951707-G-A ***
13472326-C-A 11316650-C-A ***
8417400-CTG-C 8549359-CTG-C ***
14221061-A-G 12100355-A-G ***
13470488-C-T 11314812-C-T ***
13447728-C-A 11292052-C-A ***
58905247-T-C 56685624-A-G ***
6663110-C-A 6795069-C-A ***
14036809-T-C 11916103-T-C ***
16028895-T-C 13917015-T-C ***
10994166-A-T ***
10878359-C-T ***
13811122-TG-T 11690416-TG-T ***
22685272-TA-T 20523386-TA-T 10×A***
13489699-GC-G 11334023-GC-G ***
3991968-ACTCT-A 4123927-ACTCT-A 9×CT***
14502084-T-TA 12390289-T-TA 10×A***
13610966-C-A 11455290-C-A ***
5242502-G-GTATA 5374461-G-GTATA ***
7994371-G-T 8126330-G-T ***
16350026-C-A 14238146-C-A ***
10747005-T-A ***
22023201-CTTTTTTTT-C 19861315-CTTTTTTTT-C 20×T***
18750228-CA-C 16638348-CA-C ***
13254002-GTTT-G,GTTTT 11098326-GTTT-G,GTTTT 17×T***
10653088-C-T ***
9012975-G-A 9175366-G-A ***
10648041-C-A ***
10747003-C-T ***
11001456-C-A ***
9461632-G-A 9624023-G-A ***
9462910-CG-C 9625301-CG-C ***
56763525-T-G ***
15566817-G-GA 13454937-G-GA 22×A***
16720607-C-CT 14608727-C-CT 9×T***
18868944-C-A 16757064-C-A ***
14970258-CT-C 12858333-CT-C 10×T***
10747000-T-C ***
10912398-G-A ***
7193939-C-A 7325898-C-A ***
11001427-C-CATTCA ***
11001436-A-C,G ***
11001448-A-G ***
11001478-C-T ***
13236392-C-A 11080716-C-A ***
17030588-CTTT-C,CT 14918708-CTTT-C,CT 16×T***
13885857-CTT-C,CTTT 11765151-CTT-C,CTTT 19×T***
17408358-C-A 15296478-C-A ***
15557033-CAAAAA-C 13445153-CAAAAA-C 18×A***
14932056-C-A 12820121-C-A ***
18189333-C-A 16077453-C-A ***
10892544-A-C ***
10892575-T-C ***
19071684-C-A 16959804-C-A ***
6756900-C-G 6888859-C-G ***
9333965-C-A 9496356-C-A ***
10669528-C-G ***
10934798-GG-G,GA ***
10669517-T-TCATGAAACC ***
15974319-A-G 13862439-A-G ***
56836666-T-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 353692954022177371597624849
Used in age calculations954022177371597624849
Counts of SNPs65
Variant counts last updated 2018-07-13 23:41:49.



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