Carpenter
BigY2: 487639MDKA Birth: United States > Virginia
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 487639 |
---|---|---|---|---|---|---|---|---|
19962185-A-G | 17850305-A-G | P5_Prx | A* | |||||
24247045-C-T | 22100898-C-T | P3_b1 | A* | |||||
26076664-C-T | 23930517-C-T | P1_Y1 | A* | |||||
28815805-C-T | 26669658-C-T | A* | ||||||
8638694-G-A | 8770653-G-A | Y | Y | + | ||||
14407291-G-GTTT | 12286589-G-GTTT | + | ||||||
15129155-C-T | 13017242-C-T | Y | Y | + | ||||
16086660-G-A | 13974780-G-A | Y | + | |||||
21239968-C-T | 19078082-C-T | Y | Y | + | ||||
21654789-T-C | 19492903-T-C | Y | Y | + | ||||
22439989-G-A | 20278103-G-A | FT456381 | DYZ19 | + | ||||
26003827-G-A | 23857680-G-A | BY226552 | P1_Y1 | + | ||||
22317337-C-T | 20155451-C-T | DYZ19 | * | |||||
17959801-A-C | 15847921-A-C | FTB58348 | Y | Y | * | |||
22340955-G-C | 20179069-G-C | DYZ19 | * | |||||
18928096-G-A | 16816216-G-A | CTS9487 Z2830 | ** | |||||
7717737-CTTCTTTCT-C | 7849696-CTTCTTTCT-C | 13×TTCT | ** | |||||
14200654-C-T | 12079948-C-T | CTS2153 | ** | |||||
16622405-C-A | 14510525-C-A | YP5755 | ** | |||||
25719211-T-A | 23573064-T-A | Y32051 | P1_b3 | ** | ||||
22249168-G-T | 20087282-G-T | DYZ19 | ** | |||||
14639064-CTTTTTT-C | 12527133-CTTTTTT-C | 18×T | ** | |||||
13429652-G-T | 11273976-G-T | ** | ||||||
10921118-C-T | ** | |||||||
10921130-C-A | ** | |||||||
10921145-C-CCACCA | ** | |||||||
10921162-A-G | ** | |||||||
10921194-T-TCCACA | ** | |||||||
10856370-G-A | ** | |||||||
10856389-G-T | ** | |||||||
15107526-T-C | 12995613-T-C | ** | ||||||
15776782-C-A | 13664902-C-A | ** | ||||||
10662650-T-A | ** | |||||||
10941091-C-A | ** | |||||||
10895801-C-T | ** | |||||||
10799586-A-T | ** | |||||||
10921186-T-A | ** | |||||||
27996129-A-AT | 25849982-A-AT | P1_Y2 | ** | |||||
10776156-A-T | ** | |||||||
21935150-C-A | 19773264-C-A | ** | ||||||
10895880-C-T | ** | |||||||
10785510-G-A | FGC77094 | ** | ||||||
10958838-T-C | ** | |||||||
10895871-C-A | ** | |||||||
22215235-G-T | 20053349-G-T | ** | ||||||
15941461-C-A | 13829581-C-A | ** | ||||||
10895802-A-T | ** | |||||||
10844864-A-G | ** | |||||||
11022031-C-A | ** | |||||||
11022038-T-C | ** | |||||||
11022060-C-T | ** | |||||||
11022128-T-C | ** | |||||||
18810912-C-A | 16699032-C-A | ** | ||||||
10847053-C-T | ** | |||||||
14517391-C-A | 12405592-C-A | ** | ||||||
10751182-T-A | ** | |||||||
10751217-T-A | ** | |||||||
17821823-C-A | 15709943-C-A | ** | ||||||
11015905-T-A | ** | |||||||
16034172-CA-C | 13922292-CA-C | 10×A | ** | |||||
10753668-C-A | ** | |||||||
10748010-C-A | ** | |||||||
10847072-C-G | ** | |||||||
10847075-T-C | ** | |||||||
9602655-T-TG | 9765046-T-TG | IR3_Prx | ** | |||||
10662599-C-A | ** | |||||||
10662645-A-T | ** | |||||||
10895807-G-C | ** | |||||||
10895841-CA-C | ** | |||||||
24283364-C-A | 22137217-C-A | P3_t1 | ** | |||||
14931731-C-A | 12819796-C-A | ** | ||||||
10845762-A-G | FT433842 | ** | ||||||
10873055-C-T | ** | |||||||
10856383-G-A | FT434216 | ** | ||||||
6228200-TA-T | 6360159-TA-T | IR3_Dst | ** | |||||
14065805-C-A | 11945099-C-A | ** | ||||||
10895852-A-GGTCTG | ** | |||||||
25709374-C-A | 23563227-C-A | P1_b3 | ** | |||||
7115965-C-A | 7247924-C-A | ** | ||||||
22340060-G-T | 20178174-G-T | DYZ19 | ** | |||||
13712611-A-G | 11556935-A-G | DYZ17 | ** | |||||
13712639-G-A | 11556963-G-A | DYZ17 | ** | |||||
10987237-C-T | ** | |||||||
28794220-G-A | 26648073-G-A | ** | ||||||
13486779-C-T | 11331103-C-T | ** | ||||||
13486800-A-AT | 11331124-A-AT | ** | ||||||
19677918-C-G | 17566038-C-G | P5_Prx | ** | |||||
14152342-C-A | 12031636-C-A | ** | ||||||
13271775-T-TAA | 11116099-T-TAA | 12×A | ** | |||||
10924884-G-T | ** | |||||||
28635461-C-A | 26489314-C-A | ** | ||||||
3051574-C-A | 3183533-C-A | ** | ||||||
13468163-G-T | 11312487-G-T | ** | ||||||
7021872-C-A | 7153831-C-A | ** | ||||||
3759403-G-T | 3891362-G-T | ** | ||||||
16490902-C-A | 14379022-C-A | ** | ||||||
2794986-C-A | 2926945-C-A | ** | ||||||
28794185-G-T | 26648038-G-T | ** | ||||||
11648538-C-A | DYZ17 | ** | ||||||
13293681-C-A | 11138005-C-A | ** | ||||||
17153486-A-C | 15041606-A-C | ** | ||||||
17504829-C-A | 15392949-C-A | ** | ||||||
10662601-C-T | ** | |||||||
10795086-C-T | ** | |||||||
10785453-C-A | ** | |||||||
9823958-A-C | 9986349-A-C | ** | ||||||
13871403-C-A | 11750697-C-A | ** | ||||||
13461060-C-T | 11305384-C-T | ** | ||||||
8369623-A-C | 8501582-A-C | ** | ||||||
10751703-T-G | ** | |||||||
28794245-G-A | 26648098-G-A | ** | ||||||
10744247-C-T | ** | |||||||
10986841-C-T | ** | |||||||
3847377-C-A | 3979336-C-A | ** | ||||||
10759815-C-T | ** | |||||||
17279716-C-A | 15167836-C-A | ** | ||||||
6177555-C-A | 6309514-C-A | IR3_Dst | ** | |||||
10776145-C-A | ** | |||||||
16708277-C-A | 14596397-C-A | ** | ||||||
17668292-C-A | 15556412-C-A | ** | ||||||
10751719-T-C | ** | |||||||
10751723-C-A | ** | |||||||
13937380-C-A | 11816674-C-A | ** | ||||||
10989860-C-A | ** | |||||||
16179864-C-A | 14067984-C-A | ** | ||||||
10817964-C-A | ** | |||||||
18714084-AT-A | 16602204-AT-A | 8×T | ** | |||||
13460984-A-C | 11305308-A-C | ** | ||||||
9868151-C-A | 10030542-C-A | ** | ||||||
24583338-GT-G | 22437191-GT-G | P3_t2 | ** | |||||
5426390-C-G | 5558349-C-G | 17×T | ** | |||||
13225811-C-A | 11070135-C-A | ** | ||||||
16967380-C-A | 14855500-C-A | ** | ||||||
14356505-C-A | 12235800-C-A | ** | ||||||
10915951-G-T | ** | |||||||
28701863-C-A | 26555716-C-A | ** | ||||||
10783788-C-G | ** | |||||||
15816365-C-A | 13704485-C-A | ** | ||||||
15941452-C-A | 13829572-C-A | ** | ||||||
15791035-C-A | 13679155-C-A | ** | ||||||
18754806-C-A | 16642926-C-A | ** | ||||||
10785505-G-A | ** | |||||||
10759826-A-ACAGCC | ** | |||||||
10780825-C-A | ** | |||||||
21325884-C-A | 19163998-C-A | ** | ||||||
10975766-C-T | ** | |||||||
17211611-C-A | 15099731-C-A | ** | ||||||
56728139-A-T | ** | |||||||
17318369-T-A | 15206489-T-A | ** | ||||||
2688585-CAT-C | 2820544-CAT-C | 19×AT | ** | |||||
5687562-C-A | 5819521-C-A | ** | ||||||
10693884-C-A | ** | |||||||
13712613-G-A | 11556937-G-A | DYZ17 | ** | |||||
15921754-C-A | 13809874-C-A | ** | ||||||
6922866-C-A | 7054825-C-A | ** | ||||||
10777417-C-A | ** | |||||||
10744255-T-A | ** | |||||||
18186029-GA-G | 16074149-GA-G | ** | ||||||
28469383-C-A | 26323236-C-A | ** | ||||||
3599474-C-A | 3731433-C-A | ** | ||||||
10899097-T-A | ** | |||||||
10751743-T-G | ** | |||||||
19739340-A-AAAT | 17627460-A-AAAT | P5_Prx | 13×AAC | ** | ||||
10776170-C-G | ** | |||||||
10989873-T-TCCAC | ** | |||||||
15816357-C-A | 13704477-C-A | ** | ||||||
18310238-T-A | 16198358-T-A | P6_Prx | ** | |||||
8702849-C-A | 8834808-C-A | ** | ||||||
17285214-C-A | 15173334-C-A | ** | ||||||
7864245-C-A | 7996204-C-A | ** | ||||||
13213552-C-A | 11057876-C-A | ** | ||||||
17551577-C-A | 15439697-C-A | ** | ||||||
19168625-T-G | 17056745-T-G | ** | ||||||
2814778-C-A | 2946737-C-A | ** | ||||||
10998423-T-C | ** | |||||||
10998428-T-C | ** | |||||||
5710025-C-A | 5841984-C-A | ** | ||||||
13446547-T-G | 11290871-T-G | ** | ||||||
4918411-C-A | 5050370-C-A | ** | ||||||
17842263-C-A | 15730383-C-A | ** | ||||||
14602681-C-A | 12490883-C-A | ** | ||||||
14504634-C-A | 12392839-C-A | ** | ||||||
14383734-C-CCT | 12263030-C-CCT | ** | ||||||
26392966-A-T | 24246819-A-T | P1_Y1 | ** | |||||
7990684-C-A | 8122643-C-A | ** | ||||||
15396637-A-T | 13284757-A-T | ** | ||||||
6654512-C-A | 6786471-C-A | ** | ||||||
9421364-C-A | 9583755-C-A | ** | ||||||
16214113-C-A | 14102233-C-A | ** | ||||||
26392976-A-T | 24246829-A-T | P1_Y1 | ** | |||||
23360604-C-A | 21198718-C-A | ** | ||||||
23801673-C-A | 21639787-C-A | ** | ||||||
14544027-G-A | 12432228-G-A | ** | ||||||
23204393-T-G | 21042507-T-G | ** | ||||||
10870516-C-T | ** | |||||||
7315214-C-A | 7447173-C-A | ** | ||||||
10958842-A-T | ** | |||||||
10958858-T-A | ** | |||||||
10958883-G-A | ** | |||||||
10861026-C-A | ** | |||||||
13468112-C-T | 11312436-C-T | ** | ||||||
10751184-C-T | ** | |||||||
21780435-T-A | ** | |||||||
10687889-C-A | ** | |||||||
23200660-C-A | 21038774-C-A | ** | ||||||
28474965-CAAAAA-C | 26328818-CAAAAA-C | 18×A | ** | |||||
10925359-T-A | ** | |||||||
56844732-C-A | ** | |||||||
10777786-C-A | ** | |||||||
8253750-C-A | 8385709-C-A | ** | ||||||
28778890-C-A | 26632743-C-A | ** | ||||||
10894613-T-C | ** | |||||||
14474496-A-G | 12353765-A-G | ** | ||||||
21550126-C-A | 19388240-C-A | ** | ||||||
2885692-C-A | 3017651-C-A | ** | ||||||
3051427-T-C | 3183386-T-C | ** | ||||||
3064608-G-T | 3196567-G-T | ** | ||||||
3218777-C-A | 3350736-C-A | ** | ||||||
3328011-T-A | 3459970-T-A | ** | ||||||
3388609-T-G | 3520568-T-G | ** | ||||||
3468528-G-T | 3600487-G-T | ** | ||||||
3491214-G-T | 3623173-G-T | ** | ||||||
3640700-CCTTCCTTCCT-C | 3772659-CCTTCCTTCCT-C | ** | ||||||
3680518-C-A | 3812477-C-A | ** | ||||||
3847150-T-G | 3979109-T-G | ** | ||||||
3851635-C-A | 3983594-C-A | ** | ||||||
4049194-C-A | 4181153-C-A | ** | ||||||
4293139-T-G | 4425098-T-G | FT320172 | ** | |||||
4416922-G-A | 4548881-G-A | ** | ||||||
4438120-A-T | 4570079-A-T | ** | ||||||
4767270-C-A | 4899229-C-A | ** | ||||||
4908257-T-A | 5040216-T-A | ** | ||||||
4908267-T-A | 5040226-T-A | ** | ||||||
5001827-C-A | 5133786-C-A | ** | ||||||
5102240-G-T | 5234199-G-T | ** | ||||||
5380506-C-A | 5512465-C-A | ** | ||||||
5449333-A-T | 5581292-A-T | ** | ||||||
5600337-T-G | 5732296-T-G | ** | ||||||
5652685-TCCTTAAACA-T | 5784644-TCCTTAAACA-T | ** | ||||||
5652833-G-T | 5784792-G-T | ** | ||||||
6236978-A-T | 6368937-A-T | IR3_Dst | ** | |||||
6237004-T-A | 6368963-T-A | IR3_Dst | ** | |||||
6237024-A-T | 6368983-A-T | IR3_Dst | ** | |||||
6237043-A-T | 6369002-A-T | IR3_Dst | ** | |||||
6328307-AC-A | 6460266-AC-A | IR3_Dst | ** | |||||
6492558-C-G | 6624517-C-G | ** | ||||||
6593724-T-A | 6725683-T-A | ** | ||||||
6690191-T-A | 6822150-T-A | ** | ||||||
6948477-A-G | 7080436-A-G | ** | ||||||
6978273-C-T | 7110232-C-T | ** | ||||||
7107716-C-T | 7239675-C-T | ** | ||||||
7199445-G-T | 7331404-G-T | ** | ||||||
7255451-T-A | 7387410-T-A | ** | ||||||
7303805-A-C | 7435764-A-C | ** | ||||||
7315207-C-A | 7447166-C-A | ** | ||||||
7331220-A-T | 7463179-A-T | ** | ||||||
7590864-T-G | 7722823-T-G | ** | ||||||
7775074-C-A | 7907033-C-A | ** | ||||||
7968306-T-C | 8100265-T-C | ** | ||||||
8055237-A-T | 8187196-A-T | ** | ||||||
8072296-T-G | 8204255-T-G | ** | ||||||
8075275-G-T | 8207234-G-T | ** | ||||||
8136700-C-A | 8268659-C-A | ** | ||||||
8719360-T-A | 8851319-T-A | ** | ||||||
8749059-C-A | 8881018-C-A | ** | ||||||
8790178-A-C | 8922137-A-C | ** | ||||||
8854090-C-A | 8986049-C-A | ** | ||||||
9015325-C-A | 9177716-C-A | ** | ||||||
9344572-C-G | 9506963-C-G | ** | ||||||
9519812-T-TTC | 9682203-T-TTC | 17×TTTC | ** | |||||
9810972-T-A | 9973363-T-A | ** | ||||||
9965023-A-T | 10127414-A-T | ** | ||||||
10019583-T-TC | 10181974-T-TC | ** | ||||||
10652830-C-A | ** | |||||||
10669221-T-A | ** | |||||||
10753649-T-C | ** | |||||||
10753650-G-C | ** | |||||||
10776469-T-G | ** | |||||||
10780792-C-G | ** | |||||||
10780805-G-A | ** | |||||||
10780805-GACTCC-G | ** | |||||||
10780826-T-C | ** | |||||||
10780870-C-T | ** | |||||||
10783707-C-A | ** | |||||||
10785428-T-A | ** | |||||||
10785451-A-G | ** | |||||||
10785456-G-A | ** | |||||||
10785457-A-G | ** | |||||||
10785460-T-TCA | ** | |||||||
10785470-C-T | ** | |||||||
10785471-C-G | ** | |||||||
10785480-A-G | ** | |||||||
10785499-G-C | ** | |||||||
10785500-C-A | ** | |||||||
10791781-C-A | ** | |||||||
10836525-A-C | ** | |||||||
10841164-T-G | ** | |||||||
10846570-T-A | ** | |||||||
10851937-C-A | ** | |||||||
10851945-C-A | ** | |||||||
10851950-T-A | ** | |||||||
10852186-A-T | ** | |||||||
10856731-C-A | ** | |||||||
10858445-T-A | ** | |||||||
10862785-T-A | ** | |||||||
10870509-C-A | ** | |||||||
10886583-T-G | ** | |||||||
10893838-T-G | ** | |||||||
10899111-A-G | ** | |||||||
10899336-C-A | ** | |||||||
10947323-C-T | ** | |||||||
10950878-T-G | ** | |||||||
10975774-T-C | ** | |||||||
10979131-C-A | ** | |||||||
10987925-A-T | ** | |||||||
10988008-C-G | ** | |||||||
10995195-A-G | ** | |||||||
11001812-A-T | ** | |||||||
11022109-TTTACT-C | ** | |||||||
11024824-T-C | ** | |||||||
13222144-G-A | 11066468-G-A | ** | ||||||
13229897-C-A | 11074221-C-A | ** | ||||||
13291347-C-A | 11135671-C-A | ** | ||||||
13421395-T-A | 11265719-T-A | ** | ||||||
13445274-T-C | 11289598-T-C | ** | ||||||
13712614-G-T | 11556938-G-T | DYZ17 | ** | |||||
13724673-G-T | 11568997-G-T | DYZ17 | ** | |||||
13724689-A-T | 11569013-A-T | DYZ17 | ** | |||||
11663809-G-T | DYZ17 | ** | ||||||
11672453-G-T | DYZ17 | ** | ||||||
11677306-A-T | DYZ17 | ** | ||||||
13824689-A-C | 11703983-A-C | DYZ17 | ** | |||||
13963419-T-C | 11842713-T-C | ** | ||||||
14088415-A-C | 11967709-A-C | ** | ||||||
14143038-A-C | 12022332-A-C | ** | ||||||
14213784-A-C | 12093078-A-C | ** | ||||||
14213795-G-T | 12093089-G-T | ** | ||||||
14213796-A-T | 12093090-A-T | ** | ||||||
14213806-A-C | 12093100-A-C | ** | ||||||
14213813-G-T | 12093107-G-T | ** | ||||||
14213819-A-T | 12093113-A-T | ** | ||||||
14213826-A-T | 12093120-A-T | ** | ||||||
14255083-A-T | 12134377-A-T | ** | ||||||
14276419-T-A | 12155713-T-A | ** | ||||||
14295675-G-C | 12174969-G-C | ** | ||||||
14370820-C-A | 12250116-C-A | ** | ||||||
14390015-C-A | 12269311-C-A | ** | ||||||
14474484-C-A | 12353753-C-A | ** | ||||||
12375273-C-A | ** | |||||||
14527067-T-G | 12415268-T-G | ** | ||||||
14546443-A-T | 12434644-A-T | ** | ||||||
14605834-A-T | 12494036-A-T | ** | ||||||
14605875-T-A | 12494077-T-A | ** | ||||||
14688861-C-A | 12576927-C-A | ** | ||||||
14702065-C-A | 12590131-C-A | ** | ||||||
15083975-T-G | 12972065-T-G | ** | ||||||
15084643-C-A | 12972733-C-A | ** | ||||||
15116515-G-T | 13004602-G-T | ** | ||||||
15324517-T-G | 13212635-T-G | ** | ||||||
15336514-G-T | 13224632-G-T | ** | ||||||
15406930-A-C | 13295050-A-C | ** | ||||||
15690737-A-T | 13578857-A-T | ** | ||||||
15748813-T-A | 13636933-T-A | ** | ||||||
15748832-T-A | 13636952-T-A | ** | ||||||
15776845-T-C | 13664965-T-C | ** | ||||||
15848959-A-G | 13737079-A-G | ** | ||||||
15916612-C-A | 13804732-C-A | ** | ||||||
16004778-G-T | 13892898-G-T | ** | ||||||
16298300-C-A | 14186420-C-A | ** | ||||||
16423411-G-T | 14311531-G-T | ** | ||||||
16622319-C-A | 14510439-C-A | ** | ||||||
16933202-C-A | 14821322-C-A | ** | ||||||
17033797-A-C | 14921917-A-C | ** | ||||||
17147493-C-A | 15035613-C-A | ** | ||||||
17153634-A-C | 15041754-A-C | ** | ||||||
17170377-C-G | 15058497-C-G | ** | ||||||
17188331-T-A | 15076451-T-A | ** | ||||||
17191552-T-C | 15079672-T-C | ** | ||||||
17231455-A-T | 15119575-A-T | ** | ||||||
17297194-T-G | 15185314-T-G | ** | ||||||
17426219-C-T | 15314339-C-T | ** | ||||||
17499865-G-T | 15387985-G-T | ** | ||||||
17505467-C-A | 15393587-C-A | ** | ||||||
17666486-C-A | 15554606-C-A | ** | ||||||
17666514-C-A | 15554634-C-A | ** | ||||||
17842254-C-A | 15730374-C-A | ** | ||||||
17994902-A-C | 15883022-A-C | P7_Prx | ** | |||||
18147537-TGAGA-T | 16035657-TGAGA-T | ** | ||||||
18284547-C-T | 16172667-C-T | P6_Prx | ** | |||||
18310170-G-C | 16198290-G-C | P6_Prx | ** | |||||
18310188-T-A | 16198308-T-A | P6_Prx | ** | |||||
18310201-T-A | 16198321-T-A | P6_Prx | ** | |||||
18310212-T-A | 16198332-T-A | P6_Prx | ** | |||||
18772518-A-C | 16660638-A-C | ** | ||||||
18858633-CT-C | 16746753-CT-C | ** | ||||||
18901108-A-T | 16789228-A-T | ** | ||||||
18908082-ATGTGTGTGTGTGTG-A | 16796202-ATGTGTGTGTGTGTG-A | 14×TG | ** | |||||
18910848-C-A | 16798968-C-A | ** | ||||||
19053157-C-A | 16941277-C-A | ** | ||||||
19266721-T-A | 17154841-T-A | ** | ||||||
19330585-G-T | 17218705-G-T | ** | ||||||
19575874-T-A | 17463994-T-A | P5_Prx | ** | |||||
19575883-C-A | 17464003-C-A | P5_Prx | ** | |||||
19609239-A-T | 17497359-A-T | P5_Prx | ** | |||||
19609275-A-T | 17497395-A-T | P5_Prx | ** | |||||
19609278-C-G | 17497398-C-G | P5_Prx | ** | |||||
19609283-A-T | 17497403-A-T | P5_Prx | ** | |||||
19609289-A-T | 17497409-A-T | P5_Prx | ** | |||||
19764295-T-A | 17652415-T-A | P5_Prx | ** | |||||
19764301-C-A | 17652421-C-A | P5_Prx | ** | |||||
19764316-T-A | 17652436-T-A | P5_Prx | ** | |||||
19764318-C-A | 17652438-C-A | P5_Prx | ** | |||||
19764324-T-A | 17652444-T-A | P5_Prx | ** | |||||
19764343-T-A | 17652463-T-A | P5_Prx | ** | |||||
19844949-T-G | 17733069-T-G | P5_Prx | ** | |||||
20125784-A-T | 18013904-A-T | P5_Dst | ** | |||||
20292440-A-T | 18130554-A-T | P5_Dst | ** | |||||
20292475-A-T | 18130589-A-T | P5_Dst | ** | |||||
20333786-C-A | 18171900-C-A | P5_Dst | ** | |||||
21140039-A-G | 18978153-A-G | ** | ||||||
21244021-C-A | 19082135-C-A | ** | ||||||
21653085-C-A | 19491199-C-A | ** | ||||||
21677558-A-C | 19515672-A-C | ** | ||||||
21744785-T-G | 19582899-T-G | ** | ||||||
21819446-A-T | 19657560-A-T | ** | ||||||
22172826-T-A | 20010940-T-A | ** | ||||||
22172861-G-T | 20010975-G-T | ** | ||||||
22207613-T-A | 20045727-T-A | ** | ||||||
22249173-G-T | 20087287-G-T | DYZ19 | ** | |||||
22249197-G-T | 20087311-G-T | DYZ19 | ** | |||||
22338543-C-A | 20176657-C-A | DYZ19 | ** | |||||
22366359-G-C | 20204473-G-C | DYZ19 | ** | |||||
22538556-T-G | 20376670-T-G | FTB77247 | ** | |||||
22584252-T-C | 20422366-T-C | ** | ||||||
22615351-G-C | 20453465-G-C | ** | ||||||
22723385-TCA-T | 20561499-TCA-T | ** | ||||||
22881347-T-A | 20719461-T-A | ** | ||||||
23114031-ATATATATATATATATAT-A | 20952145-ATATATATATATATATAT-A | ** | ||||||
23201612-G-T | 21039726-G-T | ** | ||||||
23274107-C-A | 21112221-C-A | ** | ||||||
23337806-A-T | 21175920-A-T | ** | ||||||
23426931-A-T | 21265045-A-T | ** | ||||||
23440624-G-T | 21278738-G-T | ** | ||||||
23834648-A-T | 21672762-A-T | ** | ||||||
23834677-A-T | 21672791-A-T | ** | ||||||
23849686-A-T | 21687800-A-T | ** | ||||||
21752231-G-T | ** | |||||||
24125428-C-A | 21979281-C-A | P3_b1 | ** | |||||
24283269-A-G | 22137122-A-G | P3_t1 | ** | |||||
24408273-C-A | 22262126-C-A | ** | ||||||
24632504-C-A | 22486357-C-A | P3_t2 | ** | |||||
24632512-G-T | 22486365-G-T | P3_t2 | ** | |||||
24632529-G-T | 22486382-G-T | P3_t2 | ** | |||||
24632536-G-T | 22486389-G-T | P3_t2 | ** | |||||
24632545-G-T | 22486398-G-T | P3_t2 | ** | |||||
24632551-A-T | 22486404-A-T | P3_t2 | ** | |||||
25915914-T-A | 23769767-T-A | P1_Y1 | ** | |||||
25915928-T-A | 23769781-T-A | P1_Y1 | ** | |||||
25915931-T-A | 23769784-T-A | P1_Y1 | ** | |||||
25915944-T-A | 23769797-T-A | P1_Y1 | ** | |||||
25915952-T-A | 23769805-T-A | P1_Y1 | ** | |||||
25915953-T-A | 23769806-T-A | P1_Y1 | ** | |||||
25915962-T-A | 23769815-T-A | P1_Y1 | ** | |||||
25915983-T-A | 23769836-T-A | P1_Y1 | ** | |||||
25915998-T-A | 23769851-T-A | P1_Y1 | ** | |||||
26163785-A-T | 24017638-A-T | P1_Y1 | ** | |||||
26163791-A-T | 24017644-A-T | P1_Y1 | ** | |||||
26163806-A-T | 24017659-A-T | P1_Y1 | ** | |||||
26273849-T-C | 24127702-T-C | P1_Y1 | ** | |||||
26273854-T-C | 24127707-T-C | P1_Y1 | ** | |||||
26273859-T-C | 24127712-T-C | P1_Y1 | ** | |||||
26273860-T-C | 24127713-T-C | P1_Y1 | ** | |||||
26328664-A-C | 24182517-A-C | P1_Y1 | ** | |||||
26379191-C-A | 24233044-C-A | P1_Y1 | ** | |||||
26393001-A-T | 24246854-A-T | P1_Y1 | ** | |||||
26393011-A-T | 24246864-A-T | P1_Y1 | ** | |||||
27861027-G-T | 25714880-G-T | P1_Y2 | ** | |||||
27861042-T-TA | 25714895-T-TA | P1_Y2 | ** | |||||
27974672-T-TC | 25828525-T-TC | P1_Y2 | ** | |||||
28243680-A-T | 26097533-A-T | P1_b4 | ** | |||||
28530672-C-A | 26384525-C-A | ** | ||||||
28709773-G-T | 26563626-G-T | ** | ||||||
28719933-C-A | 26573786-C-A | ** | ||||||
28734766-A-C | 26588619-A-C | ** | ||||||
28754934-T-G | 26608787-T-G | ** | ||||||
28794216-T-A | 26648069-T-A | ** | ||||||
28794272-G-T | 26648125-G-T | ** | ||||||
28800904-G-T | 26654757-G-T | ** | ||||||
56844412-G-T | ** | |||||||
56848251-C-A | ** | |||||||
56859023-A-C | ** | |||||||
56859027-C-A | ** | |||||||
23983-T-C | ** | |||||||
8426377-G-GCTTCTTCTTCTT | 8558336-G-GCTTCTTCTTCTT | 22×CTT | *** | |||||
2686629-A-AT | 2818588-A-AT | 10×T | *** | |||||
10877835-C-T | *** | |||||||
16767153-CT-C,CTT | 14655273-CT-C,CTT | 17×T | *** | |||||
13485569-A-G | 11329893-A-G | *** | ||||||
11017479-C-A | *** | |||||||
10877817-C-T | *** | |||||||
11001437-T-C,TGCC | *** | |||||||
10667016-T-A | *** | |||||||
22037305-C-A | 19875419-C-A | Y108216 | *** | |||||
17470732-C-A | 15358852-C-A | *** | ||||||
10754930-T-G | *** | |||||||
10754938-A-G | *** | |||||||
13489444-G-A | 11333768-G-A | *** | ||||||
10754983-A-C | *** | |||||||
6697278-C-A | 6829237-C-A | *** | ||||||
7722918-TAA-T | 7854877-TAA-T | 11×A | *** | |||||
19517474-C-A | 17405594-C-A | *** | ||||||
9771940-CTTT-C,CTT | 9934331-CTTT-C,CTT | 18×T | *** | |||||
10744475-ATTC-A,AC | *** | |||||||
15792623-C-A | 13680743-C-A | *** | ||||||
16734887-C-A | 14623007-C-A | *** | ||||||
14557925-C-A | 12446126-C-A | *** | ||||||
19038032-C-A | 16926152-C-A | FGC40225 | *** | |||||
10834251-T-C | *** | |||||||
17687915-C-A | 15576035-C-A | *** | ||||||
11677613-C-A | DYZ17 | *** | ||||||
11015169-ATATCC-A,ATATTC | *** | |||||||
10786480-C-G | *** | |||||||
13489460-C-A | 11333784-C-A | *** | ||||||
19333443-G-T | 17221563-G-T | *** | ||||||
28492330-C-A | 26346183-C-A | *** | ||||||
13465406-C-A | 11309730-C-A | *** | ||||||
16707059-A-G | 14595179-A-G | *** | ||||||
3255233-C-A | 3387192-C-A | *** | ||||||
8084240-T-C | 8216199-T-C | *** | ||||||
10024044-C-A | 10186435-C-A | *** | ||||||
10028539-CTGCTTT-C | 10190930-CTGCTTT-C | *** | ||||||
10834187-A-G | *** | |||||||
10834223-T-A | *** | |||||||
10834236-CAGAGA-C | *** | |||||||
10992869-C-A | *** | |||||||
13445283-AT-A | 11289607-AT-A | *** | ||||||
14172560-C-A | 12051854-C-A | *** | ||||||
14471991-C-A | 12351260-C-A | *** | ||||||
15860400-T-C | 13748520-T-C | *** | ||||||
16592694-C-A | 14480814-C-A | *** | ||||||
17033817-C-A | 14921937-C-A | *** | ||||||
17673253-C-A | 15561373-C-A | *** | ||||||
18634539-C-A | 16522659-C-A | *** | ||||||
19155036-C-A | 17043156-C-A | *** | ||||||
21438522-GGCA-G | 19276636-GGCA-G | *** | ||||||
21528323-G-T | 19366437-G-T | *** | ||||||
22526201-A-G | 20364315-A-G | *** | ||||||
22527295-C-A | 20365409-C-A | *** | ||||||
23742146-G-T | 21580260-G-T | *** | ||||||
23786994-T-C | 21625108-T-C | *** | ||||||
28658251-C-A | 26512104-C-A | *** | ||||||
28660890-C-A | 26514743-C-A | *** | ||||||
31214-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.