Bean
BigY2: 361892MDKA Birth:

Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 361892 |
---|---|---|---|---|---|---|---|---|
25879451-C-T | 23733304-C-T | P1_Y1 | A* | |||||
26041785-G-A | 23895638-G-A | P1_Y1 | A* | |||||
26060538-C-T | 23914391-C-T | P1_Y1 | A* | |||||
13230344-G-A | 11074668-G-A | FGC43689 | + | |||||
8452173-G-A | 8584132-G-A | BY72895 | Y | Y | + | |||
8741903-C-A | 8873862-C-A | BY75543 | Y | Y | + | |||
9447507-G-C | 9609898-G-C | BY79463 | Y | Y | + | |||
16772955-G-A | 14661075-G-A | BY110001 | Y | Y | + | |||
18047540-G-A | 15935660-G-A | BY119449 | Y | Y | + | |||
18068108-T-C | 15956228-T-C | BY119645 | Y | Y | + | |||
19192847-G-C | 17080967-G-C | BY127107 | Y | Y | + | |||
21826597-C-T | 19664711-C-T | BY135759 | Y | Y | + | |||
22437952-T-A | 20276066-T-A | BY218464 | DYZ19 | + | ||||
22467973-T-G | 20306087-T-G | BY24565 | DYZ19 | + | ||||
22472210-A-T | 20310324-A-T | BY53042 | DYZ19 | + | ||||
23527935-G-C | 21366049-G-C | BY145956 | Y | Y | + | |||
19791558-G-A | 17679678-G-A | P5_Prx | * | |||||
10023720-C-T | 10186111-C-T | ** | ||||||
21940037-CATATAT-C | 19778151-CATATAT-C | 22×AT | ** | |||||
13833420-C-A | 11712714-C-A | ** | ||||||
19073869-T-C | 16961989-T-C | 10×AC | ** | |||||
3158906-C-A | 3290865-C-A | ** | ||||||
21279789-G-T | 19117903-G-T | ** | ||||||
14776939-T-A | 12665008-T-A | ** | ||||||
15622588-C-A | 13510708-C-A | ** | ||||||
13465913-G-C | 11310237-G-C | ** | ||||||
10799637-C-A | ** | |||||||
28492008-C-A | 26345861-C-A | ** | ||||||
13488763-C-T | 11333087-C-T | ** | ||||||
16320394-C-CA | 14208514-C-CA | 10×A | ** | |||||
13462280-C-T | 11306604-C-T | ** | ||||||
10938299-T-C | ** | |||||||
10938303-A-G | ** | |||||||
10938309-C-T | ** | |||||||
10938311-C-G | ** | |||||||
10938324-C-T | ** | |||||||
10938329-G-C | ** | |||||||
10938331-C-T | ** | |||||||
10938349-T-C | ** | |||||||
10938389-A-T | ** | |||||||
10667031-T-C | ** | |||||||
23825094-C-A | 21663208-C-A | ** | ||||||
17071190-CGAAA-C | 14959310-CGAAA-C | 6×GAAA | ** | |||||
7706444-C-A | 7838403-C-A | ** | ||||||
13488235-C-A | 11332559-C-A | ** | ||||||
11021562-T-C | FT393939 | ** | ||||||
7224044-C-A | 7356003-C-A | ** | ||||||
17480049-C-A | 15368169-C-A | ** | ||||||
19416808-C-A | 17304928-C-A | ** | ||||||
10807040-C-T | ** | |||||||
56850033-G-A | ** | |||||||
11004373-G-T | ** | |||||||
9987634-C-A | 10150025-C-A | ** | ||||||
17834370-G-T | 15722490-G-T | ** | ||||||
9944937-C-A | 10107328-C-A | ** | ||||||
24481-T-G | ** | |||||||
11671151-C-A | ** | |||||||
10799629-C-CAATTCCATTT | ** | |||||||
10683362-A-C | ** | |||||||
56837973-G-T | ** | |||||||
20849711-A-AG | 18687825-A-AG | P4_Dst | ** | |||||
22809926-C-A | 20648040-C-A | ** | ||||||
18841112-TAAAA-T | 16729232-TAAAA-T | 16×A | ** | |||||
23807577-T-A | 21645691-T-A | ** | ||||||
28719890-C-A | 26573743-C-A | ** | ||||||
11027348-T-C | ** | |||||||
11021549-T-TTCCAC | ** | |||||||
10799517-G-A | ** | |||||||
10799536-A-G | ** | |||||||
7254021-G-T | 7385980-G-T | ** | ||||||
16288791-C-A | 14176911-C-A | FT425342 | ** | |||||
10669403-C-T | ** | |||||||
10669434-C-GGTAAA | ** | |||||||
10770407-T-A | ** | |||||||
11021554-T-A | ** | |||||||
22880794-C-A | 20718908-C-A | ** | ||||||
15336012-T-C | 13224130-T-C | ** | ||||||
10755457-C-T | ** | |||||||
13213386-C-A | 11057710-C-A | ** | ||||||
18232127-C-A | 16120247-C-A | ** | ||||||
19532442-C-A | 17420562-C-A | ** | ||||||
11659362-C-A | ** | |||||||
10899935-C-T | ** | |||||||
22055372-C-T | 19893486-C-T | ** | ||||||
11021504-C-CT | ** | |||||||
11021386-C-G | ** | |||||||
17885761-G-T | 15773881-G-T | ** | ||||||
15932427-C-A | 13820547-C-A | ** | ||||||
4138926-G-T | 4270885-G-T | ** | ||||||
23198282-G-A | 21036396-G-A | ** | ||||||
10938335-TCCACC-T | ** | |||||||
10938351-C-G | ** | |||||||
10938369-G-C | ** | |||||||
8762186-C-A | 8894145-C-A | ** | ||||||
14363422-C-T | 12242717-C-T | ** | ||||||
10935633-A-T | ** | |||||||
3436266-C-A | 3568225-C-A | ** | ||||||
19732419-G-A | 17620539-G-A | P5_Prx | ** | |||||
7391827-C-A | 7523786-C-A | ** | ||||||
10659239-C-A | ** | |||||||
10755456-C-T | ** | |||||||
6133828-C-A | 6265787-C-A | ** | ||||||
28558993-C-A | 26412846-C-A | ** | ||||||
4700359-C-A | 4832318-C-A | ** | ||||||
16379111-C-A | 14267231-C-A | ** | ||||||
10899965-C-A | ** | |||||||
27864408-A-T | 25718261-A-T | P1_Y2 | ** | |||||
24475104-G-T | 22328957-G-T | ** | ||||||
23981833-ATGTGTG-A | 21835686-ATGTGTG-A | 17×TG | ** | |||||
16021056-C-A | 13909176-C-A | ** | ||||||
14032642-CAAAA-C | 11911936-CAAAA-C | 14×A | ** | |||||
11669874-C-A | ** | |||||||
21162502-C-A | 19000616-C-A | ** | ||||||
7131998-C-A | 7263957-C-A | ** | ||||||
16411336-C-A | 14299456-C-A | ** | ||||||
13585264-C-A | 11429588-C-A | ** | ||||||
13974161-G-T | 11853455-G-T | ** | ||||||
2928562-C-A | 3060521-C-A | ** | ||||||
10969170-C-A | ** | |||||||
9890969-C-A | 10053360-C-A | ** | ||||||
11004387-T-C | ** | |||||||
10861150-C-A | ** | |||||||
16422439-C-A | 14310559-C-A | ** | ||||||
10666839-C-A | ** | |||||||
4003002-C-A | 4134961-C-A | ** | ||||||
13223801-G-A | 11068125-G-A | ** | ||||||
13487881-C-A | 11332205-C-A | ** | ||||||
14428100-C-A | 12307375-C-A | ** | ||||||
13952680-C-A | 11831974-C-A | ** | ||||||
16777992-C-A | 14666112-C-A | ** | ||||||
10664104-C-A | ** | |||||||
13494093-C-A | 11338417-C-A | ** | ||||||
21238805-C-A | 19076919-C-A | ** | ||||||
13803370-A-G | 11682664-A-G | ** | ||||||
18996450-C-A | 16884570-C-A | ** | ||||||
10744756-C-T | FT429292 | ** | ||||||
10744764-A-T | ** | |||||||
10990103-C-G | ** | |||||||
11004372-A-C | ** | |||||||
13454712-C-A | 11299036-C-A | ** | ||||||
10989344-C-A | ** | |||||||
21573955-C-A | 19412069-C-A | ** | ||||||
4862744-C-A | 4994703-C-A | ** | ||||||
28782323-C-A | 26636176-C-A | ** | ||||||
17014463-C-A | 14902583-C-A | ** | ||||||
11033137-G-C | ** | |||||||
7383679-C-A | 7515638-C-A | ** | ||||||
21162412-C-A | 19000526-C-A | ** | ||||||
7111002-C-A | 7242961-C-A | ** | ||||||
5800278-C-A | 5932237-C-A | ** | ||||||
15396973-C-A | 13285093-C-A | ** | ||||||
6776371-C-A | 6908330-C-A | ** | ||||||
23832887-C-A | 21671001-C-A | ** | ||||||
10759912-T-C | ** | |||||||
3286617-C-A | 3418576-C-A | ** | ||||||
13522928-C-A | 11367252-C-A | ** | ||||||
14328431-C-G | 12207725-C-G | ** | ||||||
13280620-C-A | 11124944-C-A | ** | ||||||
11004727-G-T | ** | |||||||
7167710-C-A | 7299669-C-A | ** | ||||||
15394440-C-A | 13282560-C-A | ** | ||||||
24458541-G-T | 22312394-G-T | ** | ||||||
19745955-C-A | 17634075-C-A | P5_Prx | ** | |||||
15366079-G-T | 13254199-G-T | ** | ||||||
4075808-C-T | 4207767-C-T | ** | ||||||
5828988-C-A | 5960947-C-A | ** | ||||||
28492418-C-A | 26346271-C-A | ** | ||||||
16505093-C-A | 14393213-C-A | ** | ||||||
17840074-C-A | 15728194-C-A | ** | ||||||
11646361-C-A | ** | |||||||
15452280-C-A | 13340400-C-A | ** | ||||||
14959526-C-A | 12847601-C-A | ** | ||||||
10023492-C-A | 10185883-C-A | ** | ||||||
17492399-C-A | 15380519-C-A | ** | ||||||
14993976-G-T | 12882061-G-T | ** | ||||||
11004379-C-T | ** | |||||||
22649391-C-A | 20487505-C-A | ** | ||||||
11036052-C-A | ** | |||||||
10900792-C-A | ** | |||||||
10802443-C-A | ** | |||||||
10988807-C-T | ** | |||||||
4138456-G-T | 4270415-G-T | ** | ||||||
9932633-C-A | 10095024-C-A | ** | ||||||
14178081-C-A | 12057375-C-A | ** | ||||||
8720161-C-A | 8852120-C-A | ** | ||||||
9820591-C-A | 9982982-C-A | ** | ||||||
23190099-C-A | 21028213-C-A | ** | ||||||
15777090-C-A | 13665210-C-A | ** | ||||||
15376007-C-A | 13264127-C-A | ** | ||||||
13631560-C-A | 11475884-C-A | ** | ||||||
22901848-A-G | 20739962-A-G | ** | ||||||
21748310-C-A | 19586424-C-A | ** | ||||||
8080191-C-A | 8212150-C-A | ** | ||||||
28653364-C-A | 26507217-C-A | ** | ||||||
10748205-C-A | ** | |||||||
13868717-A-G | 11748011-A-G | ** | ||||||
56858931-G-A | ** | |||||||
5199726-T-A | 5331685-T-A | ** | ||||||
10023761-C-A | 10186152-C-A | ** | ||||||
24406842-C-A | 22260695-C-A | ** | ||||||
9109502-G-T | ** | |||||||
3435887-GA-G | 3567846-GA-G | ** | ||||||
2803591-C-A | 2935550-C-A | ** | ||||||
25461433-CTTT-C | 23315286-CTTT-C | P2_r2 | 26×T | ** | ||||
8384716-G-T | 8516675-G-T | ** | ||||||
2813742-C-A | 2945701-C-A | ** | ||||||
2842919-G-T | 2974878-G-T | ** | ||||||
2858785-C-A | 2990744-C-A | ** | ||||||
2873812-C-A | 3005771-C-A | ** | ||||||
3040050-C-A | 3172009-C-A | ** | ||||||
3047145-G-T | 3179104-G-T | ** | ||||||
3092673-GT-G | 3224632-GT-G | ** | ||||||
3099219-G-T | 3231178-G-T | ** | ||||||
3154136-G-T | 3286095-G-T | ** | ||||||
3189921-C-A | 3321880-C-A | FT172362 | ** | |||||
3401282-A-G | 3533241-A-G | ** | ||||||
3760171-C-A | 3892130-C-A | ** | ||||||
3811329-A-T | 3943288-A-T | ** | ||||||
3954642-C-A | 4086601-C-A | ** | ||||||
3991320-G-T | 4123279-G-T | ** | ||||||
4114669-C-A | 4246628-C-A | ** | ||||||
4236066-C-A | 4368025-C-A | ** | ||||||
4365125-C-A | 4497084-C-A | ** | ||||||
4585993-A-T | 4717952-A-T | ** | ||||||
4596507-G-T | 4728466-G-T | ** | ||||||
4640793-C-A | 4772752-C-A | ** | ||||||
4854965-C-A | 4986924-C-A | ** | ||||||
4960317-G-T | 5092276-G-T | ** | ||||||
4969212-A-G | 5101171-A-G | ** | ||||||
4973597-A-T | 5105556-A-T | ** | ||||||
4976845-A-C | 5108804-A-C | ** | ||||||
4976995-G-T | 5108954-G-T | ** | ||||||
5004916-G-T | 5136875-G-T | FTA52273 | ** | |||||
5192893-A-T | 5324852-A-T | ** | ||||||
5235965-G-T | 5367924-G-T | ** | ||||||
5237009-C-A | 5368968-C-A | ** | ||||||
5313544-TTCC-T | 5445503-TTCC-T | ** | ||||||
5322989-G-A | 5454948-G-A | ** | ||||||
5409811-C-A | 5541770-C-A | ** | ||||||
5472419-C-A | 5604378-C-A | ** | ||||||
5494587-A-C | 5626546-A-C | ** | ||||||
5665291-C-A | 5797250-C-A | ** | ||||||
5782002-T-C | 5913961-T-C | FT409853 | ** | |||||
5808542-C-T | 5940501-C-T | ** | ||||||
5817538-G-A | 5949497-G-A | ** | ||||||
5874159-G-T | 6006118-G-T | ** | ||||||
5923733-A-G | 6055692-A-G | ** | ||||||
5926884-G-T | 6058843-G-T | ** | ||||||
5976312-T-C | 6108271-T-C | ** | ||||||
6063430-C-A | 6195389-C-A | ** | ||||||
6403497-C-A | 6535456-C-A | ** | ||||||
6454545-T-C | 6586504-T-C | ** | ||||||
6468199-T-G | 6600158-T-G | ** | ||||||
6472711-T-C | 6604670-T-C | ** | ||||||
6755862-T-C | 6887821-T-C | ** | ||||||
6769973-C-A | 6901932-C-A | ** | ||||||
6884365-T-A | 7016324-T-A | FT406569 | ** | |||||
6922448-C-A | 7054407-C-A | ** | ||||||
6975408-G-GA | 7107367-G-GA | ** | ||||||
7011593-T-G | 7143552-T-G | ** | ||||||
7016147-CAAA-C | 7148106-CAAA-C | 16×A | ** | |||||
7113115-A-G | 7245074-A-G | ** | ||||||
7131801-G-A | 7263760-G-A | ** | ||||||
7131859-C-A | 7263818-C-A | ** | ||||||
7132845-C-A | 7264804-C-A | ** | ||||||
7186141-A-G | 7318100-A-G | ** | ||||||
7186768-A-T | 7318727-A-T | ** | ||||||
7235926-C-A | 7367885-C-A | ** | ||||||
7269372-A-G | 7401331-A-G | ** | ||||||
7335777-CT-C | 7467736-CT-C | ** | ||||||
7416816-C-A | 7548775-C-A | ** | ||||||
7448467-G-T | 7580426-G-T | IR1_L | ** | |||||
7564212-C-A | 7696171-C-A | ** | ||||||
7702347-A-G | 7834306-A-G | ** | ||||||
7706354-C-A | 7838313-C-A | ** | ||||||
8092706-G-T | 8224665-G-T | ** | ||||||
8172805-A-G | 8304764-A-G | ** | ||||||
8385180-A-G | 8517139-A-G | ** | ||||||
8736657-A-G | 8868616-A-G | ** | ||||||
8768567-G-A | 8900526-G-A | ** | ||||||
8906937-C-A | 9038896-C-A | ** | ||||||
9079640-A-T | 9242031-A-T | ** | ||||||
9131311-C-A | 9293702-C-A | ** | ||||||
9963441-C-A | 10125832-C-A | ** | ||||||
9998485-T-G | 10160876-T-G | ** | ||||||
10023711-G-A | 10186102-G-A | ** | ||||||
10689317-G-T | ** | |||||||
10693244-C-T | ** | |||||||
10746919-A-ATTCTG | ** | |||||||
10758560-G-T | ** | |||||||
10759919-C-T | ** | |||||||
10763873-C-A | ** | |||||||
10787568-A-G | ** | |||||||
10798486-C-A | ** | |||||||
10799821-C-A | ** | |||||||
10807094-A-T | ** | |||||||
10807382-C-A | ** | |||||||
10822710-G-T | ** | |||||||
10833777-C-G | ** | |||||||
10880407-C-A | ** | |||||||
10889684-C-A | ** | |||||||
10937550-C-A | ** | |||||||
10980439-C-G | ** | |||||||
10988503-T-A | ** | |||||||
11030166-T-C | ** | |||||||
11030167-CCATT-C | ** | |||||||
13224096-C-A | 11068420-C-A | ** | ||||||
13225582-C-A | 11069906-C-A | ** | ||||||
13228866-G-C | 11073190-G-C | ** | ||||||
13248538-G-A | 11092862-G-A | ** | ||||||
13257544-C-A | 11101868-C-A | ** | ||||||
13267747-TTG-T | 11112071-TTG-T | ** | ||||||
13294187-C-A | 11138511-C-A | ** | ||||||
13311129-C-A | 11155453-C-A | ** | ||||||
13347858-C-T | 11192182-C-T | ** | ||||||
13465909-A-T | 11310233-A-T | ** | ||||||
13488757-C-G | 11333081-C-G | ** | ||||||
13522846-C-A | 11367170-C-A | ** | ||||||
13523559-C-A | 11367883-C-A | ** | ||||||
13605863-A-G | 11450187-A-G | ** | ||||||
11656435-A-G | ** | |||||||
13914801-G-T | 11794095-G-T | ** | ||||||
13928029-C-A | 11807323-C-A | ** | ||||||
13960869-C-A | 11840163-C-A | ** | ||||||
13984288-T-C | 11863582-T-C | ** | ||||||
14000641-C-A | 11879935-C-A | ** | ||||||
14214817-C-A | 12094111-C-A | ** | ||||||
14218425-A-C | 12097719-A-C | ** | ||||||
14303521-C-A | 12182815-C-A | ** | ||||||
14340866-C-A | 12220161-C-A | ** | ||||||
14354402-GT-G | 12233697-GT-G | ** | ||||||
14377150-T-C | 12256446-T-C | ** | ||||||
14395796-T-C | 12275092-T-C | ** | ||||||
14474623-G-A | 12353892-G-A | ** | ||||||
14502580-T-G | 12390785-T-G | ** | ||||||
14556244-G-A | 12444445-G-A | ** | ||||||
14556245-C-A | 12444446-C-A | ** | ||||||
14557797-T-C | 12445998-T-C | ** | ||||||
14582225-C-A | 12470425-C-A | ** | ||||||
14657601-GAAAA-G | 12545666-GAAAA-G | 10×A | ** | |||||
14671505-G-C | 12559571-G-C | ** | ||||||
14771270-G-C | 12659339-G-C | ** | ||||||
14888135-G-A | 12776201-G-A | ** | ||||||
14888195-C-A | 12776261-C-A | ** | ||||||
15131558-C-A | 13019645-C-A | ** | ||||||
15396894-C-A | 13285014-C-A | ** | ||||||
15398282-A-G | 13286402-A-G | ** | ||||||
15432890-G-A | 13321010-G-A | ** | ||||||
15739398-G-T | 13627518-G-T | ** | ||||||
15758455-C-A | 13646575-C-A | ** | ||||||
15789120-A-G | 13677240-A-G | ** | ||||||
15793486-A-C | 13681606-A-C | ** | ||||||
15862425-C-A | 13750545-C-A | ** | ||||||
16002239-C-A | 13890359-C-A | ** | ||||||
16015795-A-G | 13903915-A-G | FTB81616 | ** | |||||
16021063-G-T | 13909183-G-T | ** | ||||||
16037958-C-A | 13926078-C-A | ** | ||||||
16051674-C-A | 13939794-C-A | ** | ||||||
16089593-G-T | 13977713-G-T | ** | ||||||
16240813-T-C | 14128933-T-C | ** | ||||||
16274075-C-T | 14162195-C-T | ** | ||||||
16354940-C-T | 14243060-C-T | ** | ||||||
16457326-AT-A | 14345446-AT-A | ** | ||||||
16467548-A-C | 14355668-A-C | ** | ||||||
16526870-C-A | 14414990-C-A | ** | ||||||
16539588-A-T | 14427708-A-T | ** | ||||||
16551155-C-A | 14439275-C-A | ** | ||||||
16572773-C-G | 14460893-C-G | ** | ||||||
16614770-C-A | 14502890-C-A | FTB46947 | ** | |||||
16621388-G-T | 14509508-G-T | ** | ||||||
16625959-C-A | 14514079-C-A | ** | ||||||
16727926-G-A | 14616046-G-A | ** | ||||||
16865238-C-A | 14753358-C-A | ** | ||||||
16914386-C-T | 14802506-C-T | ** | ||||||
16929558-C-A | 14817678-C-A | ** | ||||||
17152733-T-C | 15040853-T-C | ** | ||||||
17346151-T-C | 15234271-T-C | ** | ||||||
17373224-T-C | 15261344-T-C | ** | ||||||
17374545-G-T | 15262665-G-T | ** | ||||||
17503349-A-T | 15391469-A-T | ** | ||||||
17668346-G-T | 15556466-G-T | ** | ||||||
17673730-T-A | 15561850-T-A | ** | ||||||
17718289-T-A | 15606409-T-A | ** | ||||||
17951638-G-A | 15839758-G-A | ** | ||||||
18022246-TA-T | 15910366-TA-T | ** | ||||||
18098906-C-G | 15987026-C-G | ** | ||||||
18185963-C-A | 16074083-C-A | ** | ||||||
18354413-G-T | 16242533-G-T | P6_Prx | ** | |||||
18611818-A-G | 16499938-A-G | ** | ||||||
18707959-A-G | 16596079-A-G | ** | ||||||
18825501-G-T | 16713621-G-T | ** | ||||||
18848517-T-A | 16736637-T-A | ** | ||||||
18966071-C-A | 16854191-C-A | ** | ||||||
19007806-C-A | 16895926-C-A | ** | ||||||
19007829-C-A | 16895949-C-A | ** | ||||||
19073893-C-A | 16962013-C-A | ** | ||||||
19088106-C-T | 16976226-C-T | ** | ||||||
19218125-G-T | 17106245-G-T | ** | ||||||
19245999-C-A | 17134119-C-A | ** | ||||||
19340484-T-G | 17228604-T-G | ** | ||||||
19517922-G-A | 17406042-G-A | FT406627 | ** | |||||
19524760-C-A | 17412880-C-A | ** | ||||||
19560214-G-T | 17448334-G-T | ** | ||||||
19675529-C-T | 17563649-C-T | P5_Prx | ** | |||||
19725768-G-T | 17613888-G-T | P5_Prx | ** | |||||
19732411-T-TCAC | 17620531-T-TCAC | P5_Prx | ** | |||||
19748072-G-T | 17636192-G-T | P5_Prx | ** | |||||
19795088-C-T | 17683208-C-T | P5_Prx | ** | |||||
19878835-G-T | 17766955-G-T | P5_Prx | ** | |||||
20022290-T-G | 17910410-T-G | P5_Prx | ** | |||||
20510949-T-C | 18349063-T-C | P5_Dst | ** | |||||
20622602-A-C | 18460716-A-C | P4_Prx | ** | |||||
20759809-A-C | 18597923-A-C | P4_Prx | ** | |||||
20801562-A-T | 18639676-A-T | P4_Prx | ** | |||||
21022743-C-A | 18860857-C-A | P4_Dst | ** | |||||
21109577-C-A | 18947691-C-A | ** | ||||||
21148582-A-T | 18986696-A-T | ** | ||||||
21279814-G-T | 19117928-G-T | ** | ||||||
21353296-C-A | 19191410-C-A | ** | ||||||
21462575-A-G | 19300689-A-G | ** | ||||||
21488972-C-A | 19327086-C-A | ** | ||||||
21748279-C-A | 19586393-C-A | ** | ||||||
21786727-G-T | 19624841-G-T | ** | ||||||
21963691-C-A | 19801805-C-A | ** | ||||||
21969450-C-A | 19807564-C-A | ** | ||||||
21979995-C-G | 19818109-C-G | BY191854 | ** | |||||
21998963-G-GTTT | 19837077-G-GTTT | 11×T | ** | |||||
22128709-G-A | 19966823-G-A | ** | ||||||
22467258-CAG-C | 20305372-CAG-C | DYZ19 | ** | |||||
22467266-C-G | 20305380-C-G | DYZ19 | ** | |||||
22467271-T-C | 20305385-T-C | DYZ19 | ** | |||||
22467949-A-G | 20306063-A-G | DYZ19 | ** | |||||
22467958-A-T | 20306072-A-T | DYZ19 | ** | |||||
22467959-C-T | 20306073-C-T | DYZ19 | ** | |||||
22467965-T-G | 20306079-T-G | DYZ19 | ** | |||||
22563016-C-G | 20401130-C-G | ** | ||||||
22729458-A-C | 20567572-A-C | ** | ||||||
22955927-C-A | 20794041-C-A | ** | ||||||
22980657-G-T | 20818771-G-T | ** | ||||||
22997824-G-C | 20835938-G-C | ** | ||||||
23048333-C-A | 20886447-C-A | ** | ||||||
23187726-C-A | 21025840-C-A | ** | ||||||
23249299-T-C | 21087413-T-C | ** | ||||||
23610029-T-C | 21448143-T-C | ** | ||||||
23625480-C-A | 21463594-C-A | ** | ||||||
23741938-C-A | 21580052-C-A | ** | ||||||
24518013-T-C | 22371866-T-C | ** | ||||||
26012981-A-G | 23866834-A-G | P1_Y1 | ** | |||||
26075709-G-T | 23929562-G-T | P1_Y1 | ** | |||||
26086005-C-A | 23939858-C-A | P1_Y1 | ** | |||||
26928096-C-A | 24781949-C-A | P1_r3 | ** | |||||
28510859-C-A | 26364712-C-A | ** | ||||||
28787978-G-T | 26641831-G-T | ** | ||||||
56885950-G-T | ** | |||||||
32892-T-G | ** | |||||||
7633798-A-C | 7765757-A-C | SK1688 | *** | |||||
13254020-C-T | 11098344-C-T | *** | ||||||
23532817-A-ATG | 21370931-A-ATG | 10×TG | *** | |||||
17587885-CA-C | 15476005-CA-C | 10×A | *** | |||||
13456255-T-A,C | 11300579-T-A,C | *** | ||||||
10930348-T-A | *** | |||||||
10888013-A-AGTGCT | *** | |||||||
10845686-C-T | *** | |||||||
10958329-C-T | *** | |||||||
10987780-A-T | *** | |||||||
10987813-C-T | *** | |||||||
10930358-C-T | *** | |||||||
10930359-C-T | *** | |||||||
15593267-T-C | 13481387-T-C | *** | ||||||
10657407-T-A | *** | |||||||
19218342-C-A | 17106462-C-A | *** | ||||||
10987272-C-G,T | *** | |||||||
56829970-CTCCAATCCAT-C,CTCCACTCCAC | *** | |||||||
10669452-T-A | *** | |||||||
10669454-C-A | *** | |||||||
10807351-A-G | *** | |||||||
14319448-GATAT-G | 12198742-GATAT-G | 8×AT | *** | |||||
23377741-C-A | 21215855-C-A | *** | ||||||
16764920-GTA-G | 14653040-GTA-G | *** | ||||||
10789513-A-T | *** | |||||||
10969874-C-A | *** | |||||||
10785282-C-CTGTT | *** | |||||||
10785283-C-CAGGTTA | *** | |||||||
19534051-C-A | 17422171-C-A | *** | ||||||
19436730-AAGAAAGAA-A,AAG | 17324850-AAGAAAGAA-A,AAG | *** | ||||||
14385103-C-A | 12264399-C-A | *** | ||||||
17503531-C-A | 15391651-C-A | *** | ||||||
17944217-C-A | 15832337-C-A | *** | ||||||
7870379-C-A | 8002338-C-A | *** | ||||||
10987825-A-C | *** | |||||||
4357083-C-A | 4489042-C-A | *** | ||||||
13483149-C-A | 11327473-C-A | FT396974 | *** | |||||
16057234-C-A | 13945354-C-A | *** | ||||||
10764547-TT-T,TTG | *** | |||||||
10958348-C-T | *** | |||||||
15285956-C-A | 13174055-C-A | *** | ||||||
9524118-C-A | 9686509-C-A | *** | ||||||
14771649-CTTTTTT-C | 12659718-CTTTTTT-C | 17×T | *** | |||||
8437536-C-A | 8569495-C-A | *** | ||||||
3334487-A-C | 3466446-A-C | *** | ||||||
3728741-T-C | 3860700-T-C | *** | ||||||
6771768-T-C | 6903727-T-C | *** | ||||||
7416455-G-A | 7548414-G-A | *** | ||||||
8288589-G-T | 8420548-G-T | *** | ||||||
8482070-C-A | 8614029-C-A | *** | ||||||
8776547-CTTTT-C,CTTT | 8908506-CTTTT-C,CTTT | 24×T | *** | |||||
8810299-C-A | 8942258-C-A | *** | ||||||
9457319-C-A | 9619710-C-A | *** | ||||||
9509785-G-T | 9672176-G-T | *** | ||||||
10673757-C-A | *** | |||||||
10845670-C-CGTGTT | *** | |||||||
13197179-C-A | 11041503-C-A | *** | ||||||
13456069-C-A | 11300393-C-A | *** | ||||||
13465872-A-G | 11310196-A-G | *** | ||||||
13465885-A-T | 11310209-A-T | *** | ||||||
13858785-C-T | 11738079-C-T | *** | ||||||
14324894-CTTTTTT-C,CTTTTT | 12204188-CTTTTTT-C,CTTTTT | 26×T | *** | |||||
14597911-G-A | 12486111-G-A | *** | ||||||
14717709-G-T | 12605777-G-T | *** | ||||||
17860078-G-T | 15748198-G-T | *** | ||||||
18215642-G-T | 16103762-G-T | FTB15244 | *** | |||||
19206740-GTAA-G,GAA | 17094860-GTAA-G,GAA | *** | ||||||
21084631-C-A | 18922745-C-A | *** | ||||||
23061949-C-A | 20900063-C-A | FT425742 | *** | |||||
23127462-G-A | 20965576-G-A | *** | ||||||
24482089-G-T | 22335942-G-T | *** | ||||||
28788432-C-A | 26642285-C-A | FT461826 | *** | |||||
56836014-G-T | *** | |||||||
56836495-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.