Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > Z251/S470 > FGC13899

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
77703
16118498-T-C 14006618-T-C P8_Prx A*
6235840-C-T 6367799-C-T IR3_Dst A*
23727071-C-T 21565185-C-T A*
6280120-G-C 6412079-G-C IR3_Dst A*
24283901-G-T 22137754-G-T P3_t1 A*
22224471-A-G 20062585-A-G DYZ19 A*
6165575-G-A 6297534-G-A IR3_Dst A*
16388074-T-C 14276194-T-C BY42367 YY+
22298368-T-A 20136482-T-A DYZ19 +
14520217-G-A 12408418-G-A BY42365 YY+
22974921-C-T 20813035-C-T Z40014 YY+
14930938-A-T 12819003-A-T BY98571 YY+
16036770-C-A 13924890-C-A BY42366 YY+
22966010-G-A 20804124-G-A BY157119 YY+
22797150-T-C 20635264-T-C BY42368 YY+
22630119-C-A 20468233-C-A BY139634 Y+
22507110-A-G 20345224-A-G BY51846 DYZ19 +
22293846-G-A 20131960-G-A DYZ19 +
16670285-C-G 14558405-C-G BY109350 YY+
14276401-T-A 12155695-T-A BY94495 YY+
22053340-GA-G 19891454-GA-G +
14099275-A-T 11978569-A-T BY54579 YY+
19068818-G-A 16956938-G-A BY125989 YY+
17963071-C-T 15851191-C-T BY118781 YY+
17921218-T-C 15809338-T-C BY118453 YY+
17535860-A-G 15423980-A-G BY115567 YY+
13685393-C-T 11529717-C-T BY30512 +
19139494-T-C 17027614-T-C BY126638 YY+
21736109-A-G 19574223-A-G BY135110 YY+
14595533-T-C 12483733-T-C BY96690 YY+
9927912-G-A 10090303-G-A FGC36247 Y+
23627020-A-G 21465134-A-G BY146833 YY+
9112675-T-G 9275066-T-G BY78203 Y+
23558402-A-T 21396516-A-T BY146262 YY+
6965990-GT-G 7097949-GT-G +
6662087-T-C 6794046-T-C BY60601 YY+
6595265-C-G 6727224-C-G BY60355 +
22235363-C-A 20073477-C-A DYZ19 *
22484046-C-G 20322160-C-G DYZ19 *
10792702-C-A **
10764004-C-A **
13642817-G-T 11487141-G-T **
10794842-C-A **
13713915-G-C 11558239-G-C **
10795051-G-A **
11643658-G-C BY27133 **
10807807-T-C **
11643677-C-CT **
11667117-A-C **
13315087-T-G 11159411-T-G **
13855540-G-T 11734834-G-T **
13989019-C-G 11868313-C-G **
13858549-G-T 11737843-G-T **
13882777-G-T 11762071-G-T **
13294259-C-G 11138583-C-G **
14019447-C-A 11898741-C-A **
10763250-CCTTT-C **
10753243-T-C **
14379241-G-A 12258537-G-A **
14384156-G-T 12263452-G-T **
14458162-A-C 12337435-A-C **
14483525-T-G 12362794-T-G **
14502591-A-G 12390796-A-G **
10753239-C-G **
10694162-T-G **
14568257-TG-T 12456457-TG-T **
13311014-G-T 11155338-G-T **
10862442-C-A **
13256183-C-A 11100507-C-A **
14721550-T-A 12609618-T-A **
10896320-T-TCGCAC **
10845690-C-CCCTCG **
10845670-C-CCATCG **
10839856-C-A **
10906155-T-C **
10830039-C-A **
10911590-G-A **
10830033-C-G **
10915873-T-G **
10813143-C-A **
10919432-G-A **
10924311-C-G **
10812258-T-G **
10924331-C-G **
11014588-T-C **
10924336-CG-C **
10956580-A-ACTACACT **
10956581-T-TCAC **
10963114-T-G **
10969361-C-A **
10987401-C-CTCCAT **
10807841-A-T **
10987932-T-G **
10991054-C-A **
10998958-C-T **
11003460-C-T **
11010501-T-C **
11014583-T-C **
11014558-T-C **
13579555-C-A 11423879-C-A **
14721558-CAT-C 12609626-CAT-C **
23143722-C-A 20981836-C-A **
24458774-AAAAAG-A 22312627-AAAAAG-A **
24404915-C-A 22258768-C-A **
23997593-C-A 21851446-C-A **
23770135-T-C 21608249-T-C **
23252699-C-A 21090813-C-A **
23143741-T-G 20981855-T-G **
22997567-A-C 20835681-A-C **
24607793-TG-T 22461646-TG-T P3_t2 **
22659003-C-A 20497117-C-A **
22611355-C-A 20449469-C-A **
22246160-C-A 20084274-C-A DYZ19 **
22205606-A-C 20043720-A-C **
22085934-A-G 19924048-A-G **
21589640-A-C 19427754-A-C **
24513251-C-A 22367104-C-A **
24607813-G-T 22461666-G-T P3_t2 **
21244088-A-G 19082202-A-G **
28791137-G-T 26644990-G-T **
28567-C-T **
56861215-T-A **
56844732-C-A **
56835226-T-C **
56734990-G-A **
28818326-A-C 26672179-A-C **
28779018-G-T 26632871-G-T **
26228661-C-A 24082514-C-A P1_Y1 **
28720830-C-A 26574683-C-A **
28611006-AT-A 26464859-AT-A 10×T**
28532743-C-A 26386596-C-A **
28521599-A-C 26375452-A-C **
27959332-TGAAAAACA-T 25813185-TGAAAAACA-T P1_Y2 **
27937837-A-AG 25791690-A-AG P1_Y2 **
27155002-T-G 25008855-T-G P1_g3 **
21390734-T-G 19228848-T-G **
20998205-C-A 18836319-C-A P4_Dst **
14721565-A-G 12609633-A-G **
10671562-TTCCAG-T **
16739446-C-A 14627566-C-A **
16707587-C-T 14595707-C-T **
16540306-T-G 14428426-T-G **
16470252-G-T 14358372-G-T **
16271992-G-A 14160112-G-A **
16259001-C-A 14147121-C-A **
16071272-T-A 13959392-T-A **
17013009-G-A 14901129-G-A **
16051078-C-A 13939198-C-A **
15682345-C-A 13570465-C-A **
15599175-T-A 13487295-T-A **
15285253-G-A 13173352-G-A **
15068885-A-G 12956976-A-G **
14721575-C-CA 12609643-C-CA **
14721573-T-C 12609641-T-C **
16932148-C-A 14820268-C-A **
17097813-C-A 14985933-C-A **
19346634-G-T 17234754-G-T **
18462625-A-G 16350745-A-G P6_Dst **
19187419-T-A 17075539-T-A **
19071948-G-A 16960068-G-A **
18988835-G-T 16876955-G-T **
18926933-C-A 16815053-C-A **
18858666-G-A 16746786-G-A **
18628086-C-T 16516206-C-T **
18409706-G-T 16297826-G-T P6_Gap **
17226337-C-A 15114457-C-A **
18407593-C-T 16295713-C-T P6_Gap **
18222396-GAA-G 16110516-GAA-G 10×A**
18174533-G-T 16062653-G-T **
18090212-C-A 15978332-C-A **
18086862-A-T 15974982-A-T **
17965196-C-A 15853316-C-A **
17374617-A-C 15262737-A-C **
10686099-C-A **
10686112-C-A **
10661257-C-A **
13564618-G-T 11408942-G-T **
14308169-C-A 12187463-C-A **
7167009-G-A 7298968-G-A **
56858089-G-T **
10997757-TACATT-C **
10677498-CTCCAT-C **
4240273-C-A 4372232-C-A **
10781919-C-A **
15034759-C-A 12922847-C-A **
16602675-C-A 14490795-C-A **
10997741-T-C **
10745221-G-T **
6992522-C-A 7124481-C-A **
11019530-C-A **
3366635-C-A 3498594-C-A **
28776717-C-A 26630570-C-A **
10956576-T-C **
15657125-TA-T 13545245-TA-T 8×A**
9502527-AG-A 9664918-AG-A **
26167728-G-GTT 24021581-G-GTT P1_Y1 12×TA**
22171227-G-T 20009341-G-T **
26073076-G-T 23926929-G-T P1_Y1 **
28701434-G-T 26555287-G-T **
13613619-G-T 11457943-G-T **
13859705-C-A 11738999-C-A **
18948158-C-A 16836278-C-A **
18577235-C-A 16465355-C-A **
10993190-A-C **
10944397-T-G **
14390543-C-A 12269839-C-A **
10753254-C-T **
20809387-T-C 18647501-T-C P4_Gap **
17480114-C-A 15368234-C-A **
10982282-G-T **
10924313-A-T **
28469346-C-A 26323199-C-A **
11018262-C-A **
16681571-C-A 14569691-C-A **
11006043-G-T **
10987936-T-C **
18682754-T-C 16570874-T-C **
10876572-T-A **
5969784-C-A 6101743-C-A **
10896352-C-G **
3150528-AT-A 3282487-AT-A 8×T**
10924437-G-T **
26379374-C-A 24233227-C-A P1_Y1 **
10911612-C-A **
10668528-G-T **
13200438-C-A 11044762-C-A **
21617605-CAAAAA-C 19455719-CAAAAA-C 23×A**
11014551-G-T **
13948604-C-CA 11827898-C-CA 10×A**
15658133-CAT-C 13546253-CAT-C **
15984461-G-T 13872581-G-T S7280Y4117 FGC21835 Z17510 **
13286035-G-A 11130359-G-A **
6826657-C-T 6958616-C-T Y275 Z3177 **
25201103-G-A 23054956-G-A ZS7956 g1 **
13720606-C-G 11564930-C-G **
10987385-A-T **
18378986-T-G 16267106-T-G P6_Prx **
10911648-T-A **
17313537-T-G 15201657-T-G **
28818396-A-G 26672249-A-G **
10911606-G-T **
10924405-T-A **
5937202-C-A 6069161-C-A **
10911650-T-C **
10911649-G-A **
10911634-A-G **
10987392-T-A **
10911631-C-A **
10911605-A-C **
10916564-T-A **
18511226-G-T 16399346-G-T P6_Dst **
10956538-CCATTG-C **
10956568-C-G **
22321510-A-G 20159624-A-G DYZ19 **
10987393-C-G **
11645287-C-A **
10931873-C-A **
11013402-C-T **
5274978-G-T 5406937-G-T **
5757696-C-A 5889655-C-A **
5523591-T-C 5655550-T-C **
5494691-C-G 5626650-C-G **
5453199-T-G 5585158-T-G **
5393620-G-A 5525579-G-A **
5375395-C-A 5507354-C-A **
5360467-CTT-C 5492426-CTT-C 11×T**
5320912-G-T 5452871-G-T **
5229391-C-A 5361350-C-A **
5871809-G-T 6003768-G-T **
5224755-T-A 5356714-T-A **
5201257-C-A 5333216-C-A **
5199583-C-A 5331542-C-A **
4960463-C-G 5092422-C-G **
4960447-A-G 5092406-A-G **
4672284-T-C 4804243-T-C **
4453934-T-C 4585893-T-C **
4282112-C-A 4414071-C-A **
5826929-G-T 5958888-G-T **
5871819-C-A 6003778-C-A **
3829277-A-T 3961236-A-T **
7053681-C-A 7185640-C-A **
10082364-C-A 10244755-C-A **
10018259-C-A 10180650-C-A **
9595084-T-TC 9757475-T-TC IR3_Prx **
9141878-T-G 9304269-T-G **
9063755-C-A 9226146-C-A **
7723992-T-G 7855951-T-G **
7332668-C-A 7464627-C-A **
7210815-C-A 7342774-C-A **
7043927-C-A 7175886-C-A **
5955345-C-A 6087304-C-A **
6922998-G-T 7054957-G-T **
6795299-C-A 6927258-C-A **
6530355-C-A 6662314-C-A **
6490678-G-T 6622637-G-T **
6408370-G-T 6540329-G-T **
6330177-C-A 6462136-C-A IR3_Dst **
6250293-A-C 6382252-A-C IR3_Dst **
6250263-T-G 6382222-T-G IR3_Dst **
5967768-A-T 6099727-A-T BY58969 **
4240264-G-T 4372223-G-T **
28593-T-A **
14153073-A-G 12032367-A-G **
11014584-G-T **
2853435-A-C 2985394-A-C **
21146262-A-T 18984376-A-T **
9444811-C-A 9607202-C-A **
6337836-A-T 6469795-A-T IR3_Dst **
10938617-T-G **
3807380-C-CTT 3939339-C-CTT 9×T**
10974172-C-A **
6414517-C-A 6546476-C-A **
14183425-A-C 12062719-A-C **
18390103-G-GA 16278223-G-GA P6_Gap **
11007674-G-T **
5367649-C-A 5499608-C-A **
11038164-C-G **
28598412-C-A 26452265-C-A **
2919836-G-T 3051795-G-T **
26379396-C-A 24233249-C-A P1_Y1 **
2950087-C-A 3082046-C-A **
3768107-C-A 3900066-C-A **
3175306-C-A 3307265-C-A **
11006340-T-A **
6402667-C-G 6534626-C-G **
3278306-C-A 3410265-C-A **
3490600-C-A 3622559-C-A **
3546527-C-A 3678486-C-A **
3105383-G-T 3237342-G-T **
3768101-C-A 3900060-C-A **
10657323-T-C ***
24847-A-G ***
19422961-C-T 17311081-C-T Y131849 ***
20842612-G-T 18680726-G-T P4_Dst ***
15574730-CATAT-C 13462850-CATAT-C 8×AT***
10746722-C-T ***
10657329-C-A ***
22510540-C-A 20348654-C-A DYZ19 ***
18738823-ATA-A,ATG 16626943-ATA-A,ATG ***
16226193-C-A 14114313-C-A ***
13461855-T-A 11306179-T-A ***
16428250-C-A 14316370-C-A ***
16590873-CAAA-C,CAAAA 14478993-CAAA-C,CAAAA 17×A***
10870414-T-C ***
8466179-C-A 8598138-C-A ***
13911617-C-A 11790911-C-A ***
13842750-A-T 11722044-A-T ***
22508472-T-C 20346586-T-C DYZ19 ***
24865-C-A ***
10657391-A-G ***
10657380-C-T ***
13644814-G-A 11489138-G-A ***
13489297-C-A 11333621-C-A ***
21929600-GTATATATATATA-G 19767714-GTATATATATATA-G 12×TA***
19407587-G-A 17295707-G-A ***
4778584-C-A 4910543-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 77703966292978850247776607
Used in age calculations966292978850247776607
Counts of SNPs2221
Variant counts last updated 2018-06-30 15:26:47.



Big Tree Main Page