Tree Position

R-P312/S116 > Z290 > L21/S145 > DF63/S522 > BY28644 > F26142

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
640340
22232351-C-G 20070465-C-G DYZ19 A*
28817522-T-C 26671375-T-C A*
25980670-G-C 23834523-G-C P1_Y1 A*
19595957-G-A 17484077-G-A P5_Prx YA*
22772313-T-C 20610427-T-C BY140690 YY+
21258321-C-T 19096435-C-T BY131503 YY+
15069954-C-T 12958045-C-T BY99560 YY+
22959800-A-G 20797914-A-G BY142046 YY+
22925118-G-A 20763232-G-A BY141773 YY+
21982320-A-T 19820434-A-T BY136835 YY+
22271146-C-A 20109260-C-A DYZ19 +
6967262-G-A 7099221-G-A BY62592 YY+
7840682-C-T 7972641-C-T BY68119 YY+
8041702-A-T 8173661-A-T BY69567 YY+
17290093-T-G 15178213-T-G BY113532 YY+
17112256-C-T 15000376-C-T BY112380 YY+
21610391-G-A 19448505-G-A BY134171 YY+
16953305-T-C 14841425-T-C BY111360 YY+
23458735-G-T 21296849-G-T BY145434 YY+
7354276-A-C 7486235-A-C BY64728 YY+
19410741-T-G 17298861-T-G BY128871 YY+
14040288-T-C 11919582-T-C BY92536 YY+
13706152-T-A 11550476-T-A BY89205 +
2774639-C-G 2906598-C-G BY56361 YY+
13989469-A-G 11868763-A-G BY92104 YY+
22471797-C-A 20309911-C-A DYZ19 +
16810625-T-G 14698745-T-G BY110330 YY+
19131887-A-G 17020007-A-G BY126570 YY+
22433689-A-T 20271803-A-T DYZ19 *
22279460-TG-T 20117574-TG-T DYZ19 *
18914177-TAT-T,TAC 16802297-TAT-T,TAC *
17353693-C-A 15241813-C-A **
16932250-C-T 14820370-C-T **
18346406-G-T 16234526-G-T P6_Prx **
17013880-C-A 14902000-C-A **
17955994-C-A 15844114-C-A **
17913612-C-A 15801732-C-A **
17217490-C-A 15105610-C-A **
17284659-C-A 15172779-C-A **
17885914-A-G 15774034-A-G **
17559713-C-A 15447833-C-A **
17687940-A-C 15576060-A-C **
17715514-C-A 15603634-C-A **
17313457-C-A 15201577-C-A **
17860022-A-C 15748142-A-C **
17353666-A-G 15241786-A-G **
17433931-C-A 15322051-C-A **
17353665-C-T 15241785-C-T **
17353656-G-A 15241776-G-A **
17832488-C-A 15720608-C-A **
17297054-C-A 15185174-C-A **
56844913-CTTCTCTAGGT-C **
16609513-C-A 14497633-C-A **
14529148-C-A 12417349-C-A **
13458055-C-T 11302379-C-T **
13472092-A-C 11316416-A-C **
13602505-C-A 11446829-C-A **
13626536-C-A 11470860-C-A **
11668350-A-T **
13937925-C-A 11817219-C-A **
14025012-C-A 11904306-C-A **
14198129-C-A 12077423-C-A **
14295774-C-A 12175068-C-A **
15309739-CAAAAAAAAAAAAAAAAAA-C 13197843-CAAAAAAAAAAAAAAAAAAA-C 41×A**
14362043-C-A 12241338-C-A **
14461065-G-T 12340338-G-T **
14507567-C-A 12395772-C-A **
14594718-A-T 12482918-A-T **
16553069-A-AT 14441189-A-AT 8×T**
14939757-C-A 12827831-C-A **
14992377-C-A 12880462-C-A **
15114658-C-A 13002745-C-A **
15129844-C-A 13017931-C-A **
15328886-GA-G 13217004-GA-G 8×A**
15355336-C-A 13243455-C-A **
15515245-C-A 13403365-C-A **
15541620-C-A 13429740-C-A **
15579541-C-A 13467661-C-A **
18673866-A-G 16561986-A-G **
15620318-A-C 13508438-A-C **
16244858-T-C 14132978-T-C **
16463422-C-A 14351542-C-A **
16544514-G-A 14432634-G-A **
18386547-C-A 16274667-C-A P6_Gap **
19102880-C-A 16991000-C-A **
18758865-C-T 16646985-C-T **
23815489-C-A 21653603-C-A **
21888663-C-G 19726777-C-G **
22008216-C-A 19846330-C-A **
22008227-G-T 19846341-G-T **
22074050-C-A 19912164-C-A **
22137105-C-A 19975219-C-A **
22732701-C-A 20570815-C-A **
23036910-C-A 20875024-C-A **
23243047-A-C 21081161-A-C **
23252518-C-A 21090632-C-A **
23371388-A-T 21209502-A-T **
23379004-C-A 21217118-C-A **
23561600-C-A 21399714-C-A **
23734206-C-A 21572320-C-A **
23818885-T-C 21656999-T-C **
21623805-C-A 19461919-C-A **
23841325-A-G 21679439-A-G **
21752810-C-A **
24504581-G-C 22358434-G-C **
27535099-A-T 25388952-A-T P1_Y2 **
27863521-G-T 25717374-G-T P1_Y2 **
27950910-A-AC 25804763-A-AC P1_Y2 **
28462948-G-T 26316801-G-T **
28542399-A-C 26396252-A-C **
28544907-C-A 26398760-C-A **
28598935-G-A 26452788-G-A **
28653760-C-A 26507613-C-A **
28711482-C-A 26565335-C-A **
56832778-C-A **
56832821-C-A **
21663235-C-A 19501349-C-A **
21554523-C-A 19392637-C-A **
18806162-C-A 16694282-C-A **
19549507-C-A 17437627-C-A **
18859137-C-A 16747257-C-A **
18886800-T-G 16774920-T-G **
18886840-T-G 16774960-T-G 4×TCCC**
18986072-C-A 16874192-C-A **
19004694-C-A 16892814-C-A **
19068924-C-A 16957044-C-A **
13195812-T-A 11040136-T-A **
19299095-C-A 17187215-C-A **
19395066-C-A 17283186-C-A **
19415875-C-A 17303995-C-A **
19476728-C-A 17364848-C-A **
19492180-A-G 17380300-A-G **
19524762-T-C 17412882-T-C **
19663299-GTGT-G 17551419-GTGT-G P5_Prx **
21435453-C-A 19273567-C-A **
19720869-C-T 17608989-C-T P5_Prx **
19720871-T-C 17608991-T-C P5_Prx **
19720875-C-T 17608995-C-T P5_Prx **
19720886-A-TG 17609006-A-TG P5_Prx **
19746112-C-A 17634232-C-A P5_Prx **
19867978-A-T 17756098-A-T P5_Prx **
19868142-C-A 17756262-C-A P5_Prx **
20063925-A-G 17952045-A-G P5_Gap **
20700025-G-T 18538139-G-T P4_Prx **
20700036-C-A 18538150-C-A P4_Prx **
21037541-C-A 18875655-C-A **
21164634-G-T 19002748-G-T **
21380938-C-T 19219052-C-T **
21382511-T-G 19220625-T-G **
13290294-C-A 11134618-C-A **
14308237-G-A 12187531-G-A **
13194739-C-A 11039063-C-A **
17353651-G-A 15241771-G-A **
8774629-G-A 8906588-G-A **
10869428-C-A **
6916451-C-A 7048410-C-A **
17367498-C-A 15255618-C-A **
17353683-G-A 15241803-G-A **
17353682-A-C 15241802-A-C **
10677915-C-A **
10889315-T-A **
28547267-C-A 26401120-C-A BY150665 **
6400934-G-A 6532893-G-A **
7195282-C-A 7327241-C-A **
13457741-C-T 11302065-C-T **
14557616-G-T 12445817-G-T **
14767962-C-A 12656031-C-A **
16539557-C-A 14427677-C-A **
26120124-C-A 23973977-C-A P1_Y1 **
10673949-A-T **
6516587-G-A 6648546-G-A **
7164610-C-A 7296569-C-A **
6926066-T-C 7058025-T-C **
6910435-C-A 7042394-C-A 16×T**
6826609-T-C 6958568-T-C **
6814519-G-T 6946478-G-T **
6541198-C-A 6673157-C-A **
6228198-TA-T 6360157-TA-T IR3_Dst **
21485850-C-A 19323964-C-A **
6212388-T-A 6344347-T-A IR3_Dst **
11031146-G-T **
4049257-C-A 4181216-C-A **
3846933-C-A 3978892-C-A **
2810790-C-A 2942749-C-A **
2665139-CTCAAAAAAAAAAAAAAAAAAAGATT-C 2797098-CTCAAAAAAAAAAAAAAAAAAAGATT-C **
22236921-G-T 20075035-G-T DYZ19 **
18262559-C-A 16150679-C-A **
11002064-A-G **
7417582-C-T 7549541-C-T **
13457726-C-A 11302050-C-A **
14721886-C-A 12609954-C-A **
13489003-C-A 11333327-C-A **
7464070-C-A 7596029-C-A IR1_L **
22222185-T-A 20060299-T-A DYZ19 **
14316186-C-A 12195480-C-A 14×T**
3609575-C-A 3741534-C-A **
13489011-C-T 11333335-C-T **
15081279-C-A 12969369-C-A **
13740790-T-A 11585114-T-A **
13740761-G-A 11585085-G-A **
13488353-A-T 11332677-A-T **
58976963-A-C 56830816-A-C **
16709902-C-A 14598022-C-A Z22074 **
4499285-A-AC 4631244-A-AC **
9439875-C-CAT 9602266-C-CAT **
13236764-C-A 11081088-C-A **
17090645-C-A 14978765-C-A **
17326701-C-A 15214821-C-A **
7662711-C-A 7794670-C-A **
9126075-G-T **
14519647-C-A 12407848-C-A **
17382522-C-A 15270642-C-A **
6791802-C-A 6923761-C-A **
13226241-C-A 11070565-C-A **
25995575-G-T 23849428-G-T P1_Y1 **
14071381-A-T 11950675-A-T **
16265138-C-A 14153258-C-A **
19375406-G-T 17263526-G-T **
28544506-C-A 26398359-C-A **
23281353-C-A 21119467-C-A **
7590934-C-A 7722893-C-A **
19304253-C-A 17192373-C-A **
10821867-C-CACTCTACTCT **
7216693-C-A 7348652-C-A **
4049884-C-A 4181843-C-A **
7430634-C-A 7562593-C-A **
9764262-C-A 9926653-C-A **
10862884-C-A **
9229268-T-A 9391659-T-A **
10859505-C-G **
10856654-C-CTCCAT **
10831534-TCC-T **
10828312-C-A **
9521757-T-C 9684148-T-C **
10821855-T-G **
10821042-C-A **
10875875-C-A **
10791040-A-C **
9807002-C-A 9969393-C-A **
10040286-T-A 10202677-T-A **
10791033-C-A **
10790225-A-G **
10631418-A-T **
10673954-A-T **
10677899-C-A **
10693779-C-A **
9229249-T-A 9391640-T-A **
10769415-C-G **
9113706-C-A 9276097-C-A **
10889309-A-T **
10901248-A-T **
10898661-G-T **
8644350-AAAAAAAC-A 8776309-AAAAAAAC-A **
10996528-C-A **
8726275-C-A 8858234-C-A **
8170020-G-A 8301979-G-A **
10945470-C-A **
10876120-C-A **
11026319-G-T **
8746472-C-T 8878431-C-T **
14753911-C-A 12641980-C-A ***
22026173-C-A 19864287-C-A ***
3164481-C-A 3296440-C-A ***
22192476-A-G 20030590-A-G ***
56685637-A-C ***
6401001-C-A 6532960-C-A ***
14823811-A-G 12711878-A-G ***
21708095-C-A 19546209-C-A ***
14865609-C-A 12753675-C-A ***
11017982-C-A ***
13458116-C-A 11302440-C-A ***
15476016-CA-C,CAA 13364136-CA-C,CAA 11×A***
14744974-C-A 12633043-C-A ***
28492336-C-A 26346189-C-A ***
22600741-C-A 20438855-C-A ***
15904167-AAAC-A 13792287-AAAC-A ***
13857268-G-T 11736562-G-T ***
10866238-C-A,T ***
14001061-C-A 11880355-C-A ***
23803600-C-A 21641714-C-A ***
24707626-T-C 22561479-T-C P3_b2 ***
14927578-C-A 12815643-C-A ***
7246174-CAAA-C,CAA 7378133-CAAA-C,CAA 15×A***
17758316-G-GT 15646436-G-GT DC350 8×T***
14143463-C-A 12022757-C-A ***
11656272-C-A ***
23231728-C-A 21069842-C-A ***
13938882-CAA-C,CA 11818176-CAA-C,CA 13×A***
24413442-G-T 22267295-G-T ***
13503870-C-A 11348194-C-A ***
2841104-CT-C,CTT 2973063-CT-C,CTT 17×T***
15264033-C-A 13152123-C-A ***
10769417-T-C,TACGAC ***
8566965-C-A 8698924-C-A ***
18996890-T-C 16885010-T-C ***
16567984-C-A 14456104-C-A ***
3051757-T-C 3183716-T-C ***
3593332-C-A 3725291-C-A ***
16868822-C-A 14756942-C-A ***
18739667-C-A 16627787-C-A ***
4862171-GAA-G 4994130-GAA-G 11×A***
18668124-C-A 16556244-C-A ***
6252025-C-A 6383984-C-A IR3_Dst ***
17018835-C-A 14906955-C-A ***
9117291-A-G 9279682-A-G ***
6674753-C-A 6806712-C-A ***
8274154-C-A 8406113-C-A ***
17718557-C-A 15606677-C-A ***
8172604-C-A 8304563-C-A ***
8135155-G-T 8267114-G-T ***
17536750-C-A 15424870-C-A ***
7613804-C-A 7745763-C-A ***
17355254-TTAGAAATTTTAA-T 15243374-TTAGAAATTTTAA-T ***
7435390-T-C 7567349-T-C ***
7224689-G-A 7356648-G-A ***
2761525-C-A 2893484-C-A ***
13842698-G-A 11721992-G-A ***
15059512-C-A 12947604-C-A ***
15493844-T-C 13381964-T-C ***
10769413-T-A ***
15216858-C-A 13104944-C-A ***
21326692-C-A 19164806-C-A ***
17317322-C-A 15205442-C-A ***
21234610-C-A 19072724-C-A ***
21172746-C-A 19010860-C-A ***
15423498-G-T 13311618-G-T ***
21562329-T-TA 19400443-T-TA 9×A***
10627691-C-A ***
15484269-C-A 13372389-C-A ***
18936609-C-A 16824729-C-A ***
9403266-C-A 9565657-C-A ***
15561638-C-A 13449758-C-A ***
15585170-C-A 13473290-C-A ***
15642177-C-A 13530297-C-A ***
15650271-C-A 13538391-C-A ***
15680353-C-A 13568473-C-A ***
15822384-C-A 13710504-C-A ***
19421649-C-A 17309769-C-A ***
15950136-C-A 13838256-C-A ***
16019493-G-T 13907613-G-T ***
19409411-AAAC-A 17297531-AAAC-A ***
13474341-G-A 11318665-G-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 640340866898371481437103085
Used in age calculations866898371481437103085
Counts of SNPs2221
Variant counts last updated 2018-06-30 15:26:43.



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