McMurray
BigY2: 132217MDKA Birth:

Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 132217 |
---|---|---|---|---|---|---|---|---|
6797980-C-A | 6929939-C-A | BY61375 | Y | Y | + | |||
7314026-C-G | 7445985-C-G | BY64506 | Y | Y | + | |||
9470514-G-C | 9632905-G-C | BY79656 | + | |||||
14707956-C-CA | 12596022-C-CA | + | ||||||
14137072-A-G | 12016366-A-G | Y | Y | * | ||||
26194444-C-CGTTTT | 24048297-C-CGTTTT | P1_Y1 | 6×GTTTT | ** | ||||
22485964-A-C | 20324078-A-C | DYZ19 | ** | |||||
2845158-C-A | 2977117-C-A | M9438 | ** | |||||
14695992-C-CAAA | 12584058-C-CAAA | 30×A | ** | |||||
15157860-CAAAAA-C | 13045947-CAAAA-C | 21×A | ** | |||||
5235822-CCA-C | 5367781-CCA-C | ** | ||||||
17713849-TC-T | 15601969-TC-T | ** | ||||||
18688468-C-A | 16576588-C-A | M8832 | ** | |||||
58990976-C-T | 56844829-C-T | ** | ||||||
21827606-CAAAAAAA-C | 19665720-CAAAAAAA-C | 21×A | ** | |||||
58996333-G-T | 56850186-G-T | ** | ||||||
58996315-T-C | 56850168-T-C | ** | ||||||
58996295-G-C | 56850148-G-C | ** | ||||||
13457494-A-T | 11301818-A-T | ** | ||||||
11022137-A-C | ** | |||||||
14453709-G-GAA | 12332982-G-GAA | 18×A | ** | |||||
10964372-A-C | ** | |||||||
11026040-C-A | ** | |||||||
10959433-CTATTG-C | ** | |||||||
11030262-T-G | ** | |||||||
56850164-T-A | ** | |||||||
56850167-C-A | ** | |||||||
56850192-G-C | ** | |||||||
56850199-C-T | ** | |||||||
56850208-T-C | ** | |||||||
3229535-TTGTGTG-T | 3361494-TTGTGTG-T | 15×TG | ** | |||||
10945193-C-T | ** | |||||||
13859431-A-T | 11738725-A-T | ** | ||||||
13859411-A-G | 11738705-A-G | ** | ||||||
13859415-G-A | 11738709-G-A | ** | ||||||
13859418-T-TA | 11738712-T-TA | ** | ||||||
13859419-G-GAAAA | 11738713-G-GAAAA | ** | ||||||
10889752-T-TC | ** | |||||||
21382578-C-A | 19220692-C-A | ** | ||||||
28798329-C-G | 26652182-C-G | ** | ||||||
10989138-A-T | ** | |||||||
10989151-C-A | ** | |||||||
26089879-C-A | 23943732-C-A | P1_Y1 | ** | |||||
26089884-C-A | 23943737-C-A | P1_Y1 | ** | |||||
5957085-T-C | 6089044-T-C | BY53543 | ** | |||||
11031562-T-A | ** | |||||||
10983909-G-C | ** | |||||||
8159772-CTAT-C | 8291731-CTAT-C | 5×TAT | ** | |||||
8792906-C-A | 8924865-C-A | FT143611 | ** | |||||
10689119-A-C | ** | |||||||
10958818-C-A | ** | |||||||
11022145-C-A | ** | |||||||
28794217-G-C | 26648070-G-C | ** | ||||||
28794218-G-C | 26648071-G-C | ** | ||||||
10937231-A-T | ** | |||||||
10655136-C-G | ** | |||||||
18050357-C-A | 15938477-C-A | ** | ||||||
10885176-G-T | ** | |||||||
10885181-C-T | ** | |||||||
25955977-TG-T | 23809830-TG-T | P1_Y1 | ** | |||||
26089868-G-T | 23943721-G-T | P1_Y1 | ** | |||||
10940893-T-C | ** | |||||||
13474426-T-G | 11318750-T-G | ** | ||||||
10947633-A-T | ** | |||||||
10828850-T-C | ** | |||||||
10983927-C-T | ** | |||||||
10983962-T-G | ** | |||||||
6996696-C-CTT | 7128655-C-CTT | 15×T | ** | |||||
16246150-G-T | 14134270-G-T | ** | ||||||
28794198-G-T | 26648051-G-T | ** | ||||||
6983780-T-G | 7115739-T-G | ** | ||||||
13698621-T-C | 11542945-T-C | ** | ||||||
13698631-C-G | 11542955-C-G | ** | ||||||
13698680-A-T | 11543004-A-T | ** | ||||||
19668820-C-A | 17556940-C-A | P5_Prx | ** | |||||
10983937-C-T | ** | |||||||
11031316-C-G | ** | |||||||
2845146-T-C | 2977105-T-C | ** | ||||||
10958883-G-C | ** | |||||||
10989186-C-T | ** | |||||||
11646240-A-T | ** | |||||||
11646241-T-A | ** | |||||||
11023067-A-C | FT393999 | ** | ||||||
11026020-C-T | ** | |||||||
10973947-C-G | ** | |||||||
10973960-CTCCA-C | ** | |||||||
10944635-T-A | ** | |||||||
10944638-A-T | ** | |||||||
13474407-T-G | 11318731-T-G | ** | ||||||
20087765-A-AG | 17975885-A-AG | P5_Dst | ** | |||||
10865816-A-ACCATG | ** | |||||||
10913759-A-C | ** | |||||||
23310632-C-A | 21148746-C-A | ** | ||||||
11022103-TTCCAC-T | ** | |||||||
56742740-T-A | ** | |||||||
13696804-A-T | 11541128-A-T | ** | ||||||
11026090-T-C | ** | |||||||
10972037-A-T | ** | |||||||
10913770-G-A | ** | |||||||
10913777-A-G | ** | |||||||
7093259-GAAA-G | 7225218-GAAA-G | 14×A | ** | |||||
10753217-T-G | ** | |||||||
10753221-A-T | ** | |||||||
10913803-C-G | ** | |||||||
10971967-C-A | ** | |||||||
8230488-C-A | 8362447-C-A | ** | ||||||
16703822-G-A | 14591942-G-A | ** | ||||||
28570423-T-A | 26424276-T-A | ** | ||||||
3229175-G-AT | 3361134-G-AT | ** | ||||||
10689104-A-T | ** | |||||||
10753215-C-G | ** | |||||||
10753247-C-A | ** | |||||||
10663180-C-A | ** | |||||||
10880344-T-A | FT435281 | ** | ||||||
10973980-T-C | ** | |||||||
11020569-C-T | ** | |||||||
11020578-C-T | ** | |||||||
11020583-T-C | ** | |||||||
15334961-C-A | 13223079-C-A | ** | ||||||
14776945-T-G | 12665014-T-G | ** | ||||||
10890257-G-T | ** | |||||||
13881345-C-A | 11760639-C-A | ** | ||||||
15127853-C-A | 13015940-C-A | ** | ||||||
18365679-T-A | 16253799-T-A | P6_Prx | ** | |||||
11008949-A-C | ** | |||||||
11008950-A-T | ** | |||||||
11008981-CTACAA-C | ** | |||||||
11648149-C-A | ** | |||||||
10682580-T-C | ** | |||||||
10971986-C-T | ** | |||||||
10880329-C-T | ** | |||||||
10949498-C-A | ** | |||||||
2806195-A-AT | 2938154-A-AT | 36×T | ** | |||||
10764426-C-A | ** | |||||||
11026027-C-A | ** | |||||||
10902193-A-T | ** | |||||||
10896353-C-T | ** | |||||||
10896362-CCAT-C | ** | |||||||
10896368-CCT-C | ** | |||||||
20778663-G-T | 18616777-G-T | P4_Prx | ** | |||||
10983984-C-CCACCA | ** | |||||||
10692849-A-C | ** | |||||||
4770459-G-T | 4902418-G-T | ** | ||||||
10999882-T-G | ** | |||||||
10671925-C-A | ** | |||||||
14384498-G-T | 12263794-G-T | ** | ||||||
10958823-T-G | ** | |||||||
10971942-C-T | ** | |||||||
15918522-C-A | 13806642-C-A | ** | ||||||
4241887-C-A | 4373846-C-A | ** | ||||||
10885206-C-A | ** | |||||||
10770491-A-C | ** | |||||||
10770507-C-G | ** | |||||||
10770531-T-G | ** | |||||||
10770557-G-T | ** | |||||||
10940880-G-A | ** | |||||||
10799649-A-G | ** | |||||||
22787198-C-A | 20625312-C-A | ** | ||||||
10913764-T-A | ** | |||||||
10913783-G-A | ** | |||||||
10913796-A-T | ** | |||||||
10913821-T-C | ** | |||||||
5873689-C-A | 6005648-C-A | ** | ||||||
19539738-C-A | 17427858-C-A | ** | ||||||
3804483-C-A | 3936442-C-A | FT93592 | ** | |||||
3591673-C-A | 3723632-C-A | ** | ||||||
56851689-C-A | ** | |||||||
10940878-C-T | ** | |||||||
10983960-C-T | ** | |||||||
10972023-T-A | ** | |||||||
10972058-G-C | ** | |||||||
10744668-C-A | ** | |||||||
8002395-T-G | 8134354-T-G | ** | ||||||
10964643-T-A | ** | |||||||
10999986-C-A | ** | |||||||
10768994-G-T | ** | |||||||
10926547-A-T | ** | |||||||
23200668-C-A | 21038782-C-A | ** | ||||||
28478983-C-A | 26332836-C-A | ** | ||||||
11643691-A-AT | ** | |||||||
10940913-T-C | ** | |||||||
19044373-C-A | 16932493-C-A | ** | ||||||
11026045-T-A | ** | |||||||
11023119-T-C | ** | |||||||
28791340-G-T | 26645193-G-T | ** | ||||||
10796648-A-AC | ** | |||||||
10796649-T-TCCCA | ** | |||||||
10796666-C-CTACAA | ** | |||||||
10796699-T-TTGCAC | ** | |||||||
26138826-C-A | 23992679-C-A | P1_Y1 | ** | |||||
6395084-C-T | 6527043-C-T | ** | ||||||
9094323-C-A | 9256714-C-A | ** | ||||||
14712069-C-A | 12600136-C-A | ** | ||||||
5188713-C-A | 5320672-C-A | ** | ||||||
10958868-T-A | ** | |||||||
6786714-C-A | 6918673-C-A | ** | ||||||
15595090-C-A | 13483210-C-A | ** | ||||||
10959385-A-T | ** | |||||||
23742465-C-T | 21580579-C-T | ** | ||||||
10655850-A-C | ** | |||||||
3110259-G-T | 3242218-G-T | ** | ||||||
28659756-C-A | 26513609-C-A | ** | ||||||
28695546-G-T | 26549399-G-T | ** | ||||||
10827362-C-T | ** | |||||||
10761750-G-T | ** | |||||||
14765133-C-A | 12653202-C-A | ** | ||||||
10752903-G-T | ** | |||||||
10927394-C-T | ** | |||||||
3966997-C-T | 4098956-C-T | ** | ||||||
10958876-C-A | ** | |||||||
3603347-C-A | 3735306-C-A | ** | ||||||
10930213-C-A | ** | |||||||
10940908-C-T | ** | |||||||
10940920-C-G | ** | |||||||
11026078-C-A | ** | |||||||
10939784-T-A | ** | |||||||
10770695-C-A | ** | |||||||
7418562-C-A | 7550521-C-A | ** | ||||||
10920990-G-C | ** | |||||||
20101796-G-T | 17989916-G-T | P5_Dst | ** | |||||
10746883-C-A | ** | |||||||
10983969-C-T | ** | |||||||
10959388-T-G | ** | |||||||
16029042-C-A | 13917162-C-A | ** | ||||||
22236856-C-A | 20074970-C-A | DYZ19 | ** | |||||
16063418-C-A | 13951538-C-A | ** | ||||||
10756840-C-A | ** | |||||||
10782629-C-A | ** | |||||||
7510651-C-A | 7642610-C-A | ** | ||||||
17474879-C-A | 15362999-C-A | ** | ||||||
14499814-G-T | 12388019-G-T | ** | ||||||
9040723-C-A | 9203114-C-A | ** | ||||||
28555540-C-A | 26409393-C-A | ** | ||||||
16981223-C-A | 14869343-C-A | ** | ||||||
2845147-G-A | 2977106-G-A | ** | ||||||
10902222-C-A | FT225476 | ** | ||||||
14100295-C-A | 11979589-C-A | ** | ||||||
13221914-A-T | 11066238-A-T | ** | ||||||
11676590-T-A | ** | |||||||
10964655-T-A | ** | |||||||
5152696-C-A | 5284655-C-A | ** | ||||||
14284897-A-T | 12164191-A-T | ** | ||||||
15070406-T-A | 12958497-T-A | ** | ||||||
11026070-C-A | ** | |||||||
15438981-C-A | 13327101-C-A | ** | ||||||
10983989-C-T | ** | |||||||
17591851-C-A | 15479971-C-A | ** | ||||||
4568460-G-T | 4700419-G-T | ** | ||||||
2817218-C-A | 2949177-C-A | ** | ||||||
10971993-A-C | ** | |||||||
21183633-C-A | 19021747-C-A | ** | ||||||
13457498-G-T | 11301822-G-T | ** | ||||||
2697580-A-C | 2829539-A-C | ** | ||||||
2854881-C-A | 2986840-C-A | ** | ||||||
3220804-G-T | 3352763-G-T | ** | ||||||
3955361-C-A | 4087320-C-A | ** | ||||||
3992562-G-T | 4124521-G-T | ** | ||||||
3997559-C-A | 4129518-C-A | ** | ||||||
4088218-A-G | 4220177-A-G | ** | ||||||
4107730-G-T | 4239689-G-T | ** | ||||||
4133494-G-T | 4265453-G-T | ** | ||||||
4185927-G-T | 4317886-G-T | ** | ||||||
4223559-C-G | 4355518-C-G | ** | ||||||
4282196-C-A | 4414155-C-A | ** | ||||||
4377382-G-T | 4509341-G-T | ** | ||||||
4389383-C-A | 4521342-C-A | ** | ||||||
4521570-C-T | 4653529-C-T | ** | ||||||
4580199-C-T | 4712158-C-T | ** | ||||||
4597623-G-C | 4729582-G-C | ** | ||||||
4875255-A-G | 5007214-A-G | ** | ||||||
5143143-C-A | 5275102-C-A | ** | ||||||
5152797-C-A | 5284756-C-A | ** | ||||||
5212422-G-A | 5344381-G-A | ** | ||||||
5216628-C-A | 5348587-C-A | ** | ||||||
5249983-C-A | 5381942-C-A | ** | ||||||
5257676-G-T | 5389635-G-T | ** | ||||||
5344082-G-T | 5476041-G-T | ** | ||||||
5393383-A-C | 5525342-A-C | ** | ||||||
5424053-C-A | 5556012-C-A | ** | ||||||
5678040-C-A | 5809999-C-A | ** | ||||||
5785819-A-C | 5917778-A-C | ** | ||||||
5817961-C-A | 5949920-C-A | ** | ||||||
5969614-C-A | 6101573-C-A | ** | ||||||
6290005-C-A | 6421964-C-A | IR3_Dst | ** | |||||
6290010-G-T | 6421969-G-T | IR3_Dst | ** | |||||
6337523-T-A | 6469482-T-A | IR3_Dst | ** | |||||
6401568-A-C | 6533527-A-C | ** | ||||||
6401571-T-A | 6533530-T-A | ** | ||||||
6401579-A-C | 6533538-A-C | ** | ||||||
6401583-T-G | 6533542-T-G | ** | ||||||
6401590-A-C | 6533549-A-C | ** | ||||||
6534860-G-A | 6666819-G-A | ** | ||||||
7100482-C-A | 7232441-C-A | ** | ||||||
7156586-C-A | 7288545-C-A | ** | ||||||
7180046-T-G | 7312005-T-G | ** | ||||||
7258713-C-A | 7390672-C-A | ** | ||||||
7428076-T-C | 7560035-T-C | ** | ||||||
7578890-C-A | 7710849-C-A | ** | ||||||
7579991-G-A | 7711950-G-A | ** | ||||||
7649204-T-G | 7781163-T-G | ** | ||||||
7917118-G-A | 8049077-G-A | ** | ||||||
7939372-C-A | 8071331-C-A | ** | ||||||
8135682-A-T | 8267641-A-T | ** | ||||||
8698995-A-G | 8830954-A-G | ** | ||||||
8736653-G-T | 8868612-G-T | ** | ||||||
9108114-G-T | ** | |||||||
9025286-T-G | 9187677-T-G | ** | ||||||
9502556-G-A | 9664947-G-A | ** | ||||||
9513683-T-C | 9676074-T-C | ** | ||||||
9540234-C-A | 9702625-C-A | IR3_Prx | ** | |||||
9941040-C-A | 10103431-C-A | ** | ||||||
10653120-T-A | ** | |||||||
10653122-C-G | ** | |||||||
10659913-C-A | ** | |||||||
10660383-C-G | ** | |||||||
10663178-C-A | ** | |||||||
10667930-A-G | FT428722 | ** | ||||||
10683228-C-T | ** | |||||||
10688020-C-G | ** | |||||||
10692644-T-A | ** | |||||||
10750931-T-G | ** | |||||||
10752907-C-A | ** | |||||||
10758617-T-G | ** | |||||||
10769396-A-T | ** | |||||||
10772028-T-A | ** | |||||||
10772038-T-C | ** | |||||||
10772518-T-G | ** | |||||||
10784825-C-A | ** | |||||||
10798329-TC-T | ** | |||||||
10799626-ATT-A | ** | |||||||
10817810-C-A | FT268700 | ** | ||||||
10825435-C-T | ** | |||||||
10844485-TTGAAC-T | ** | |||||||
10846610-C-A | ** | |||||||
10847110-T-G | ** | |||||||
10849166-C-A | ** | |||||||
10866739-C-A | ** | |||||||
10869319-C-A | ** | |||||||
10881582-T-TTCTAC | ** | |||||||
10885006-C-A | ** | |||||||
10885164-T-G | ** | |||||||
10885193-A-AC | ** | |||||||
10885195-TC-T | ** | |||||||
10889767-T-G | ** | |||||||
10890263-C-T | ** | |||||||
10901683-A-T | ** | |||||||
10902139-A-C | ** | |||||||
10902147-G-C | ** | |||||||
10905346-TA-G | ** | |||||||
10905364-A-T | ** | |||||||
10905374-T-C | ** | |||||||
10905375-G-A | ** | |||||||
10905382-T-C | ** | |||||||
10921338-C-A | ** | |||||||
10926557-A-G | ** | |||||||
10933425-C-A | ** | |||||||
10939789-T-TTGCTCTCCAC | ** | |||||||
10940907-C-G | ** | |||||||
10942476-C-A | ** | |||||||
10944651-CTCA-C | ** | |||||||
10945198-C-G | ** | |||||||
10945206-C-A | ** | |||||||
10946553-C-T | ** | |||||||
10947658-A-G | ** | |||||||
10947666-C-T | ** | |||||||
10947678-A-T | ** | |||||||
10950515-T-C | ** | |||||||
10960495-C-A | ** | |||||||
10964582-CA-T | ** | |||||||
10964649-C-T | ** | |||||||
10971993-A-ATTCCG | ** | |||||||
10972011-C-G | ** | |||||||
10972017-C-A | ** | |||||||
10972018-T-A | ** | |||||||
10972044-C-T | ** | |||||||
10973911-T-C | ** | |||||||
10973927-C-G | ** | |||||||
10983890-CATTTA-C | ** | |||||||
10983942-C-A | ** | |||||||
10983977-T-TTCTAG | ** | |||||||
10992178-C-A | ** | |||||||
10995037-A-T | ** | |||||||
10995180-G-T | ** | |||||||
11000624-A-C | ** | |||||||
11005501-T-G | ** | |||||||
11005503-C-T | ** | |||||||
11020614-A-G | ** | |||||||
11023038-A-C | ** | |||||||
11023077-C-A | ** | |||||||
11026031-T-A | ** | |||||||
13218682-C-A | 11063006-C-A | ** | ||||||
13242941-C-A | 11087265-C-A | ** | ||||||
13257091-A-T | 11101415-A-T | ** | ||||||
13257118-T-G | 11101442-T-G | ** | ||||||
13257144-A-C | 11101468-A-C | ** | ||||||
13257579-T-A | 11101903-T-A | ** | ||||||
13454363-C-T | 11298687-C-T | ** | ||||||
13493693-G-T | 11338017-G-T | ** | ||||||
13588559-C-A | 11432883-C-A | ** | ||||||
13696811-A-T | 11541135-A-T | ** | ||||||
13696852-A-G | 11541176-A-G | ** | ||||||
11644493-G-T | ** | |||||||
11648150-A-T | ** | |||||||
11660129-A-G | ** | |||||||
13857646-G-T | 11736940-G-T | FTB44867 | ** | |||||
13997738-C-A | 11877032-C-A | ** | ||||||
14019504-A-C | 11898798-A-C | ** | ||||||
14098812-T-A | 11978106-T-A | ** | ||||||
14212372-T-A | 12091666-T-A | ** | ||||||
14284885-C-A | 12164179-C-A | ** | ||||||
14546577-A-T | 12434778-A-T | ** | ||||||
14608237-A-T | 12496439-A-T | ** | ||||||
14660456-C-A | 12548521-C-A | ** | ||||||
14673703-A-T | 12561769-A-T | ** | ||||||
14912745-C-A | 12800812-C-A | ** | ||||||
14949178-C-A | 12837252-C-A | ** | ||||||
15070407-G-T | 12958498-G-T | ** | ||||||
15070426-A-T | 12958517-A-T | ** | ||||||
15105072-C-G | 12993160-C-G | ** | ||||||
15201445-A-G | 13089531-A-G | ** | ||||||
15220898-T-A | 13108984-T-A | ** | ||||||
15276381-T-C | 13164470-T-C | ** | ||||||
15276389-T-TGGCG | 13164478-T-TGGCG | ** | ||||||
15276391-G-GAAC | 13164480-G-GAAC | ** | ||||||
15276393-T-C | 13164482-T-C | ** | ||||||
15605630-G-T | 13493750-G-T | ** | ||||||
15803493-A-G | 13691613-A-G | ** | ||||||
15899084-G-A | 13787204-G-A | FT111488 | ** | |||||
15943129-C-A | 13831249-C-A | ** | ||||||
15988143-C-A | 13876263-C-A | ** | ||||||
16033559-C-A | 13921679-C-A | ** | ||||||
16092685-T-G | 13980805-T-G | ** | ||||||
16184170-C-G | 14072290-C-G | ** | ||||||
16199702-C-A | 14087822-C-A | ** | ||||||
16266005-C-A | 14154125-C-A | ** | ||||||
16430619-A-G | 14318739-A-G | ** | ||||||
16520897-G-A | 14409017-G-A | ** | ||||||
16598789-A-T | 14486909-A-T | ** | ||||||
16618280-G-T | 14506400-G-T | ** | ||||||
16710092-T-G | 14598212-T-G | ** | ||||||
16739267-C-A | 14627387-C-A | ** | ||||||
17042849-T-G | 14930969-T-G | ** | ||||||
17042902-C-A | 14931022-C-A | ** | ||||||
17210892-A-T | 15099012-A-T | ** | ||||||
17211293-G-C | 15099413-G-C | ** | ||||||
17663116-G-T | 15551236-G-T | ** | ||||||
17723095-C-A | 15611215-C-A | ** | ||||||
17824994-G-T | 15713114-G-T | ** | ||||||
17867474-C-A | 15755594-C-A | ** | ||||||
17883943-T-G | 15772063-T-G | ** | ||||||
17923485-C-T | 15811605-C-T | ** | ||||||
18040435-T-C | 15928555-T-C | ** | ||||||
18054919-C-A | 15943039-C-A | ** | ||||||
18071916-A-T | 15960036-A-T | ** | ||||||
18089084-T-G | 15977204-T-G | ** | ||||||
18401349-T-G | 16289469-T-G | P6_Gap | ** | |||||
18728753-A-G | 16616873-A-G | ** | ||||||
18754961-T-A | 16643081-T-A | ** | ||||||
19272141-T-A | 17160261-T-A | ** | ||||||
19300328-T-C | 17188448-T-C | ** | ||||||
19547289-T-TA | 17435409-T-TA | ** | ||||||
19547320-G-T | 17435440-G-T | ** | ||||||
19551871-T-C | 17439991-T-C | ** | ||||||
19756824-C-A | 17644944-C-A | P5_Prx | ** | |||||
19951140-G-T | 17839260-G-T | P5_Prx | ** | |||||
20037893-A-C | 17926013-A-C | P5_Prx | ** | |||||
20037923-T-G | 17926043-T-G | P5_Prx | ** | |||||
20101792-T-A | 17989912-T-A | P5_Dst | ** | |||||
20101793-T-A | 17989913-T-A | P5_Dst | ** | |||||
20101806-G-C | 17989926-G-C | P5_Dst | ** | |||||
20101813-G-C | 17989933-G-C | P5_Dst | ** | |||||
20101815-T-A | 17989935-T-A | P5_Dst | ** | |||||
20101816-T-A | 17989936-T-A | P5_Dst | ** | |||||
20101821-G-C | 17989941-G-C | P5_Dst | ** | |||||
20504147-CA-C | 18342261-CA-C | P5_Dst | ** | |||||
20802747-A-T | 18640861-A-T | P4_Gap | ** | |||||
21208578-G-T | 19046692-G-T | ** | ||||||
21306614-A-AT | 19144728-A-AT | ** | ||||||
21323723-T-G | 19161837-T-G | ** | ||||||
21328855-A-T | 19166969-A-T | ** | ||||||
21498980-A-G | 19337094-A-G | ** | ||||||
21672091-T-G | 19510205-T-G | ** | ||||||
21846600-T-G | 19684714-T-G | ** | ||||||
21852382-A-T | 19690496-A-T | ** | ||||||
21852480-C-A | 19690594-C-A | ** | ||||||
22075933-T-G | 19914047-T-G | ** | ||||||
22234163-A-T | 20072277-A-T | DYZ19 | ** | |||||
22234167-A-T | 20072281-A-T | DYZ19 | ** | |||||
22234180-C-A | 20072294-C-A | DYZ19 | ** | |||||
22234183-A-T | 20072297-A-T | DYZ19 | ** | |||||
22234192-A-T | 20072306-A-T | DYZ19 | ** | |||||
22234197-C-G | 20072311-C-G | BY25025 | DYZ19 | ** | ||||
22314707-G-T | 20152821-G-T | DYZ19 | ** | |||||
22314721-G-T | 20152835-G-T | DYZ19 | ** | |||||
22314757-C-A | 20152871-C-A | DYZ19 | ** | |||||
22314774-G-T | 20152888-G-T | DYZ19 | ** | |||||
22457430-C-A | 20295544-C-A | DYZ19 | ** | |||||
22713001-C-A | 20551115-C-A | ** | ||||||
22767885-C-A | 20605999-C-A | ** | ||||||
22787056-A-T | 20625170-A-T | ** | ||||||
22874403-G-A | 20712517-G-A | ** | ||||||
23081991-T-A | 20920105-T-A | ** | ||||||
23205359-A-T | 21043473-A-T | ** | ||||||
23419150-G-T | 21257264-G-T | ** | ||||||
24332121-A-T | 22185974-A-T | P3_t1 | ** | |||||
24332140-A-T | 22185993-A-T | P3_t1 | ** | |||||
24332155-A-T | 22186008-A-T | P3_t1 | ** | |||||
24332164-C-G | 22186017-C-G | P3_t1 | ** | |||||
24332166-A-T | 22186019-A-T | P3_t1 | ** | |||||
24332170-A-G | 22186023-A-G | P3_t1 | ** | |||||
24332184-A-T | 22186037-A-T | P3_t1 | ** | |||||
24332186-A-T | 22186039-A-T | P3_t1 | ** | |||||
24332191-A-T | 22186044-A-T | P3_t1 | ** | |||||
24388033-C-A | 22241886-C-A | ** | ||||||
24407429-A-C | 22261282-A-C | ** | ||||||
24883611-C-T | 22737464-C-T | BY226269 | g1 | ** | ||||
25944737-G-A | 23798590-G-A | P1_Y1 | ** | |||||
26422344-T-A | 24276197-T-A | P1_Y1 | ** | |||||
27226325-G-T | 25080178-G-T | P1_g3 | ** | |||||
28492540-A-C | 26346393-A-C | ** | ||||||
28514472-A-T | 26368325-A-T | ** | ||||||
28532840-A-C | 26386693-A-C | ** | ||||||
28535445-A-C | 26389298-A-C | ** | ||||||
28549478-G-C | 26403331-G-C | ** | ||||||
28567973-C-T | 26421826-C-T | ** | ||||||
28605889-G-A | 26459742-G-A | ** | ||||||
28728438-C-A | 26582291-C-A | ** | ||||||
28760082-C-A | 26613935-C-A | ** | ||||||
28798302-T-A | 26652155-T-A | ** | ||||||
28798311-TGAAAG-T | 26652164-TGAAAG-T | ** | ||||||
28798333-A-AGTGCAATGCT | 26652186-A-AGTGCAATGCT | ** | ||||||
56823116-T-A | ** | |||||||
56827876-GTCCAT-G | ** | |||||||
56848669-G-T | ** | |||||||
56850145-T-G | ** | |||||||
56850156-T-A | ** | |||||||
56850195-C-T | ** | |||||||
56884405-A-G | ** | |||||||
58976174-C-T | 56830027-C-T | *** | ||||||
13487742-CT-AC,C | 11332066-CT-AC,C | *** | ||||||
14938261-A-G | 12826336-A-G | *** | ||||||
10929611-C-A | *** | |||||||
10983315-C-A | *** | |||||||
14916890-CAA-C,CA | 12804957-CAA-C,CA | 15×A | *** | |||||
10911682-A-G | *** | |||||||
10964607-G-C | *** | |||||||
10689064-A-C | *** | |||||||
10652718-C-T | FGC79176 | *** | ||||||
10959378-T-C | *** | |||||||
2834869-CTTT-C,CTT | 2966828-CTTT-C,CTT | 15×T | *** | |||||
14463291-CTTT-C,CTT | 12342564-CTTT-C,CTT | 16×T | *** | |||||
14021235-G-C | 11900529-G-C | *** | ||||||
18060031-C-CTT | 15948151-C-CTT | 11×T | *** | |||||
14586010-G-T | 12474210-G-T | *** | ||||||
16818971-GTATATATA-G,GTATA | 14707091-GTATATATA-G,GTATA | 21×TA | *** | |||||
18246380-AAG-A | 16134500-AAG-A | *** | ||||||
14385077-C-A | 12264373-C-A | *** | ||||||
10828696-C-A | *** | |||||||
5170332-C-A | 5302291-C-A | *** | ||||||
7256111-A-T | 7388070-A-T | *** | ||||||
8725433-C-A | 8857392-C-A | *** | ||||||
8835258-C-A | 8967217-C-A | *** | ||||||
9220257-C-A | 9382648-C-A | *** | ||||||
10668916-C-A | *** | |||||||
10689065-C-G | *** | |||||||
10844226-T-A | *** | |||||||
10964619-C-T | *** | |||||||
10964624-C-T | *** | |||||||
10964644-C-T | FT438458 | *** | ||||||
10964659-T-C | *** | |||||||
10964660-T-A | *** | |||||||
10964663-T-G | *** | |||||||
10996001-C-A | *** | |||||||
15789302-C-A | 13677422-C-A | *** | ||||||
17238511-C-A | 15126631-C-A | *** | ||||||
17597145-C-A | 15485265-C-A | *** | ||||||
18778929-G-T | 16667049-G-T | *** | ||||||
21555238-CTT-C,CTTT | 19393352-CTT-C,CTTT | 15×T | *** | |||||
22240680-G-T | 20078794-G-T | DYZ19 | *** | |||||
56832195-TTCCAT-T,TTCCAC | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.