MaCaskill

BigY2: 650029
MDKA Birth: England

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > FGC11134 > FGC12055 > A286 > FGC49407

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
650029
28817752-G-T 26671605-G-T A*
6189488-G-T 6321447-G-T IR3_Dst A*
6328359-C-T 6460318-C-T IR3_Dst A*
6333294-C-T 6465253-C-T IR3_Dst A*
18329106-T-A 16217226-T-A P6_Prx A*
19878951-T-C 17767071-T-C P5_Prx A*
20043656-A-C 17931776-A-C P5_Prx A*
25943983-A-G 23797836-A-G P1_Y1 A*
26122524-G-GGTTAA 23976377-G-GGTTAA P1_Y1 A*
2901938-T-G 3033897-T-G BY57185 YY+
7203967-T-A 7335926-T-A FT280520 YY+
8336620-A-T 8468579-A-T BY71784 YY+
9380596-T-C 9542987-T-C FGC64800 Y+
9537461-G-A 9699852-G-A BY80192 IR3_Prx +
13694447-G-A 11538771-G-A BY54366 DYZ17 +
14876552-T-C 12764622-T-C BY98180 YY+
15662130-C-A 13550250-C-A BY103183 YY+
15705838-A-G 13593958-A-G BY103429 YY+
15989713-A-C 13877833-A-C FGC64802 YY+
16229158-C-A 14117278-C-A BY106133 YY+
17350660-G-C 15238780-G-C F5088 YY+
17872586-C-T 15760706-C-T BY117982 YY+
19255259-C-T 17143379-C-T BY127700 YY+
22425947-T-A 20264061-T-A BY217948 DYZ19 +
22440555-A-G 20278669-A-G BY32048 DYZ19 +
22954214-G-T 20792328-G-T BY142016 YY+
23157969-T-C 20996083-T-C BY143475 Y+
28813291-G-C 26667144-G-C FT462638 +
8596941-G-GA 8728900-G-GA 12×A*
13811176-A-C 11690470-A-C DYZ17 *
20715669-G-T 18553783-G-T P4_Prx **
28696630-A-T 26550483-A-T CTS12761 **
26991371-T-A 24845224-T-A P1_r4 **
7111789-C-A 7243748-C-A **
23311272-C-T 21149386-C-T 15×T**
17307354-C-A 15195474-C-A **
13205579-CA-C 11049903-CA-C 17×A**
23831423-G-A 21669537-G-A BY16422 **
58972559-C-T 56826412-C-T **
22255141-T-G 20093255-T-G FGC31283 DYZ19 **
16904664-CAAA-C 14792784-CAAA-C 40×A**
10689760-A-T **
10689807-T-C **
10689812-T-C **
10689823-C-T **
10689825-T-C **
10689834-C-G **
14910798-ATTTT-A 12798865-ATTTT-A 21×T**
10825297-T-A **
10825306-A-G **
10925539-CATT-C **
10925544-CAA-C **
10785783-G-C **
23831369-G-A 21669483-G-A **
23831413-A-G 21669527-A-G **
15145051-T-C 13033138-T-C **
10921715-A-T **
10921717-T-A **
6902-G-C **
13461094-T-C 11305418-T-C **
10668324-C-G **
10668329-C-T **
10668332-A-G **
10668338-T-A **
10987829-C-T **
13865840-C-A 11745134-C-A DYZ17 **
10877816-T-A **
10667013-C-CTATT **
56830038-C-T **
56685508-G-A **
10771907-A-T **
10657391-A-T **
14448380-C-A 12327653-C-A **
14802716-C-A 12690787-C-A **
5644719-C-A 5776678-C-A **
10821948-T-C **
13235475-C-A 11079799-C-A **
10667014-C-CGGTTTA **
16745082-C-A 14633202-C-A **
10673046-TACA-T **
6786615-T-G 6918574-T-G **
6904-T-G **
5956929-C-G 6088888-C-G FGC77278 **
5799932-C-A 5931891-C-A **
10669454-C-G **
18688500-CA-C 16576620-CA-C 20×A**
11030192-C-G **
28792402-C-A 26646255-C-A **
10814522-G-T **
6918563-AAAAG-A 7050522-AAAAG-A **
15412385-C-A 13300505-C-A **
15503317-C-A 13391437-C-A **
10668362-C-A **
10883529-T-C **
28589233-C-A 26443086-C-A **
13603035-C-A 11447359-C-A **
7280942-C-A 7412901-C-A **
10881035-A-T **
28792399-A-T 26646252-A-T **
10657383-T-G **
56881154-A-AAAAAGC 4×AAAAC**
18707946-C-A 16596066-C-A **
19547531-T-C 17435651-T-C **
17127398-C-A 15015518-C-A **
7223518-C-A 7355477-C-A **
23373162-C-A 21211276-C-A **
7020522-C-A 7152481-C-A **
10935571-C-T **
13726224-A-T 11570548-A-T DYZ17 **
13881424-C-A 11760718-C-A **
14142337-A-ATT 12021631-A-ATT 13×T**
9404387-G-T 9566778-G-T **
4470594-C-A 4602553-C-A **
11015051-A-ATACCG **
11015064-T-C **
16717322-A-C 14605442-A-C **
4693388-TA-T 4825347-TA-T 10×A**
14986195-C-A 12874263-C-A **
10012869-C-A 10175260-C-A **
19429710-C-A 17317830-C-A **
10668357-T-G **
19071208-C-A 16959328-C-A **
21426991-CAAA-C 19265105-CAAA-C 12×A**
14035011-C-A 11914305-C-A **
14270744-C-A 12150038-C-A **
10658320-C-A **
7269942-C-A 7401901-C-A **
19127641-AAAAT-A 17015761-AAAAT-A **
2729648-CTTTTTTT-C 2861607-CTTTTTTT-C 25×T**
10880659-A-G **
21334065-C-A 19172179-C-A **
14529250-G-A 12417451-G-A **
16560026-C-A 14448146-C-A **
16044877-C-A 13932997-C-A **
7138946-C-A 7270905-C-A **
10837741-C-A **
13643787-C-A 11488111-C-A **
17854327-C-A 15742447-C-A **
14301799-G-T 12181093-G-T **
23190104-G-T 21028218-G-T **
10901066-C-A **
17722899-C-A 15611019-C-A **
13468265-A-G 11312589-A-G **
16180180-C-A 14068300-C-A FT392223 **
14465399-A-G 12344672-A-G **
24910818-C-A 22764671-C-A g1 **
23831429-G-A 21669543-G-A **
16071843-C-A 13959963-C-A **
13898729-G-T 11778023-G-T **
10785792-A-C **
14405814-C-A 12285111-C-A **
13996645-C-A 11875939-C-A **
3116231-C-A 3248190-C-A **
5742796-C-A 5874755-C-A **
28645933-C-A 26499786-C-A **
13871463-C-A 11750757-C-A **
3346198-C-A 3478157-C-A **
2745132-C-A 2877091-C-A **
10673527-C-A **
16277802-C-A 14165922-C-A **
19304743-C-A 17192863-C-A **
16319877-G-T 14207997-G-T **
13490977-C-A 11335301-C-A **
26463134-G-A 24316987-G-A P1_Y1 **
28484755-C-A 26338608-C-A **
21511144-C-A 19349258-C-A **
2774800-C-A 2906759-C-A **
6085997-C-A 6217956-C-A **
14948874-C-A 12836948-C-A **
15777159-C-A 13665279-C-A **
20815653-C-A 18653767-C-A P4_Gap **
16136071-T-TG 14024191-T-TG P8_Dst **
4929191-C-A 5061150-C-A **
10904360-C-A **
22811206-C-A 20649320-C-A **
14986160-C-A 12874228-C-A **
16526791-C-A 14414911-C-A **
9993369-C-A 10155760-C-A **
56707313-G-T **
16071230-C-A 13959350-C-A **
10756277-CACTA-C **
3923221-C-A 4055180-C-A **
19530368-C-A 17418488-C-A **
28496885-C-A 26350738-C-A **
19066075-C-A 16954195-C-A **
15312436-C-A 13200541-C-A **
5393331-G-A 5525290-G-A **
5400220-GT-G 5532179-GT-G 10×T**
15239732-C-A 13127818-C-A **
22561390-T-A 20399504-T-A 10×A**
13880313-C-A 11759607-C-A FTB2991 **
13718501-G-T 11562825-G-T DYZ17 **
23831406-T-C 21669520-T-C **
9374732-C-A 9537123-C-A **
24513630-C-A 22367483-C-A **
4374343-C-A 4506302-C-A **
6926247-C-A 7058206-C-A **
10898864-C-A **
10756247-A-C **
16705606-C-A 14593726-C-A **
10654315-C-A **
27967308-G-T 25821161-G-T P1_Y2 **
11003715-C-A **
3178849-C-A 3310808-C-A **
5292825-C-A 5424784-C-A **
11027395-C-A **
7320531-C-A 7452490-C-A **
23459725-C-A 21297839-C-A **
10025400-C-A 10187791-C-A **
11027483-A-C **
21108117-C-A 18946231-C-A FT396510 **
10769492-C-A **
10691102-C-T **
14571412-C-A 12459612-C-A **
10026284-C-A 10188675-C-A **
26421481-T-G 24275334-T-G P1_Y1 **
7474450-C-A 7606409-C-A IR1_L **
16050078-C-A 13938198-C-A **
14557918-C-A 12446119-C-A **
14316315-C-A 12195609-C-A **
10756242-T-C **
14205058-C-A 12084352-C-A **
11653199-A-C DYZ17 **
17029124-C-A 14917244-C-A **
13457693-T-TG 11302017-T-TG **
13457694-TCCACTC-T 11302018-TCCACTC-T **
2785273-C-A 2917232-C-A **
18206657-C-A 16094777-C-A **
13319616-C-A 11163940-C-A **
16667986-C-A 14556106-C-A **
9123453-G-T **
10678114-T-G **
25964728-T-TC 23818581-T-TC P1_Y1 **
21635250-C-A 19473364-C-A **
6593304-C-A 6725263-C-A **
8481034-GTATATA-G 8612993-GTATATA-G 12×TA**
3271844-C-A 3403803-C-A **
5317026-C-A 5448985-C-A **
28484730-C-A 26338583-C-A **
14575870-C-A 12464070-C-A **
10756254-T-C **
20217962-A-AC 18056076-A-AC P5_Dst **
28720032-A-C 26573885-A-C **
7287885-C-A 7419844-C-A **
6769873-C-A 6901832-C-A **
5625565-C-A 5757524-C-A **
10755682-C-A **
15735400-A-C 13623520-A-C **
5318213-C-A 5450172-C-A **
10921704-A-G **
7782833-C-A 7914792-C-A **
10785829-T-C **
14786305-C-A 12674375-C-A **
7254501-C-A 7386460-C-A **
7028689-C-A 7160648-C-A **
6903770-C-A 7035729-C-A **
10785845-C-G **
4129741-C-A 4261700-C-A **
11643422-AGGAAT-A DYZ17 **
23831424-C-T 21669538-C-T **
7235891-C-A 7367850-C-A **
13859420-G-T 11738714-G-T DYZ17 **
13939946-G-T 11819240-G-T **
16485820-T-G 14373940-T-G **
10971005-C-A **
16226538-C-A 14114658-C-A **
7223539-C-A 7355498-C-A **
15334388-T-C 13222506-T-C **
2847245-C-G 2979204-C-G **
2942792-C-A 3074751-C-A **
2956664-T-A 3088623-T-A **
2956688-G-T 3088647-G-T **
2999632-G-T 3131591-G-T **
3113855-T-C 3245814-T-C **
3138129-C-A 3270088-C-A **
3145960-A-T 3277919-A-T **
3156588-G-T 3288547-G-T **
3164659-G-T 3296618-G-T **
3181835-G-T 3313794-G-T **
3214369-G-T 3346328-G-T **
3231907-C-A 3363866-C-A **
3323831-C-T 3455790-C-T **
3346206-C-A 3478165-C-A **
3375718-A-G 3507677-A-G **
3375795-A-T 3507754-A-T **
3375807-A-C 3507766-A-C **
3404248-A-C 3536207-A-C **
3486347-G-T 3618306-G-T **
3537607-G-T 3669566-G-T **
3564699-A-T 3696658-A-T **
3627897-T-C 3759856-T-C **
3645649-T-G 3777608-T-G **
3664017-G-T 3795976-G-T **
3735031-C-A 3866990-C-A **
3847218-C-T 3979177-C-T **
3876035-C-G 4007994-C-G **
3947175-G-C 4079134-G-C **
4069514-G-C 4201473-G-C **
4085833-A-T 4217792-A-T **
4157641-G-T 4289600-G-T **
4157678-A-C 4289637-A-C **
4187295-A-C 4319254-A-C **
4192620-C-T 4324579-C-T **
4240093-TC-T 4372052-TC-T **
4279983-C-A 4411942-C-A **
4282086-C-A 4414045-C-A **
4282126-C-A 4414085-C-A **
4321879-G-C 4453838-G-C **
4321992-C-A 4453951-C-A **
4385589-C-A 4517548-C-A **
4401783-C-A 4533742-C-A **
4514111-C-A 4646070-C-A **
4520280-C-A 4652239-C-A **
4540329-T-A 4672288-T-A **
4557701-T-A 4689660-T-A **
4557704-C-G 4689663-C-G **
4585352-A-T 4717311-A-T **
4615558-C-A 4747517-C-A **
4631633-T-A 4763592-T-A **
4647306-G-C 4779265-G-C **
4700459-T-C 4832418-T-C FTA54516 **
4786523-C-A 4918482-C-A **
4866402-C-A 4998361-C-A **
4878025-C-A 5009984-C-A **
4885612-G-T 5017571-G-T **
4890192-T-A 5022151-T-A **
4900266-C-A 5032225-C-A **
4933402-C-A 5065361-C-A **
4955549-C-A 5087508-C-A **
5048983-A-C 5180942-A-C **
5207220-C-A 5339179-C-A **
5274821-CT-C 5406780-CT-C **
5358784-C-A 5490743-C-A **
5400245-CTCTGTTTTAAGG-C 5532204-CTCTGTTTTAAGG-C **
5498845-C-A 5630804-C-A **
5528686-A-G 5660645-A-G **
5606617-T-A 5738576-T-A **
5625533-C-G 5757492-C-G **
5645020-G-T 5776979-G-T **
5754067-C-A 5886026-C-A **
5754155-T-A 5886114-T-A **
5754162-C-A 5886121-C-A **
5796046-C-A 5928005-C-A **
5818360-A-C 5950319-A-C **
5840576-C-A 5972535-C-A **
5870552-G-T 6002511-G-T **
5922962-C-A 6054921-C-A **
6024784-G-T 6156743-G-T **
6055861-G-T 6187820-G-T **
6149427-G-T 6281386-G-T IR3_Dst **
6293469-T-A 6425428-T-A IR3_Dst **
6359180-AG-A 6491139-AG-A **
6495539-C-A 6627498-C-A **
6535097-C-T 6667056-C-T **
6625717-T-C 6757676-T-C **
6821842-T-A 6953801-T-A **
6827537-T-A 6959496-T-A **
6830806-C-G 6962765-C-G **
6881320-A-C 7013279-A-C **
6882153-C-A 7014112-C-A **
6903715-C-A 7035674-C-A **
7028715-G-T 7160674-G-T **
7043261-C-A 7175220-C-A **
7111490-T-A 7243449-T-A **
7149771-G-T 7281730-G-T **
7200636-C-A 7332595-C-A **
7214300-C-A 7346259-C-A Y83616 **
7224847-C-A 7356806-C-A **
7228439-C-G 7360398-C-G **
7240174-C-T 7372133-C-T **
7240188-C-A 7372147-C-A **
7256305-T-A 7388264-T-A **
7256333-T-G 7388292-T-G **
7287018-C-A 7418977-C-A **
7380281-A-C 7512240-A-C **
7380285-G-T 7512244-G-T **
7433445-C-A 7565404-C-A **
7580125-C-A 7712084-C-A **
7613941-G-A 7745900-G-A FGC64799 **
7646685-C-A 7778644-C-A **
7700678-A-T 7832637-A-T **
7708830-A-T 7840789-A-T **
7753596-G-T 7885555-G-T **
7866484-T-G 7998443-T-G **
7935736-T-G 8067695-T-G **
7990019-T-A 8121978-T-A **
8276266-T-A 8408225-T-A **
8276327-G-T 8408286-G-T **
8333572-T-TCTC 8465531-T-TCTC **
8556152-A-T 8688111-A-T **
8736877-C-A 8868836-C-A **
8906988-G-T 9038947-G-T **
8913290-C-A 9045249-C-A **
9120505-G-T **
9055347-C-A 9217738-C-A **
9519786-C-A 9682177-C-A **
9873897-A-G 10036288-A-G **
9941421-G-A 10103812-G-A **
9960057-C-A 10122448-C-A **
9993694-G-C 10156085-G-C **
10056998-C-A 10219389-C-A **
10057265-A-G 10219656-A-G **
10071982-G-T 10234373-G-T **
10093682-T-G 10256073-T-G **
10652763-C-A **
10653189-T-G **
10659385-C-G **
10660077-G-T **
10750808-C-G **
10756263-A-C **
10756270-TC-T **
10756286-CCACTG-C **
10758380-G-T **
10764267-C-A **
10765958-C-A **
10770078-C-A **
10771851-C-T **
10771854-C-T **
10771927-A-G **
10782604-C-A **
10787118-C-A **
10790289-C-A **
10801863-C-A **
10809427-C-A **
10820292-T-A **
10842094-C-T **
10852599-C-A **
10857738-C-A **
10858889-G-T **
10860175-C-A **
10860711-C-T **
10861245-C-A **
10864765-C-A **
10865476-C-A **
10892542-T-G **
10896420-T-G **
10921671-T-A **
10921719-A-C **
10931025-C-A **
10949227-C-A **
10958464-G-C **
10958503-T-G **
10964646-C-T **
10967997-C-A **
10969176-C-A **
10971966-CCATTCC-A **
10977761-C-A **
10979078-T-C **
11019554-C-A **
11022500-T-G **
13248769-G-C 11093093-G-C **
13350941-T-G 11195265-T-G **
13429411-G-T 11273735-G-T **
13457498-G-T 11301822-G-T **
13468255-C-G 11312579-C-G **
13483811-A-C 11328135-A-C **
13563409-G-C 11407733-G-C **
13586042-T-G 11430366-T-G **
13596402-A-C 11440726-A-C **
13659521-C-A 11503845-C-A DYZ17 **
11653189-T-G DYZ17 **
11653482-G-T DYZ17 **
11665894-A-T DYZ17 **
13839742-A-T 11719036-A-T DYZ17 **
13872701-C-A 11751995-C-A **
13886817-G-T 11766111-G-T **
13899444-C-A 11778738-C-A **
13909302-C-A 11788596-C-A **
13928216-G-T 11807510-G-T **
13933957-C-A 11813251-C-A **
13939949-G-C 11819243-G-C **
13940006-C-A 11819300-C-A **
13940664-C-A 11819958-C-A **
14006643-C-A 11885937-C-A **
14031775-T-G 11911069-T-G **
14036914-C-A 11916208-C-A **
14070202-A-C 11949496-A-C **
14089946-C-A 11969240-C-A **
14136151-G-A 12015445-G-A **
14158253-C-A 12037547-C-A **
14256458-T-A 12135752-T-A **
14256514-A-C 12135808-A-C **
14387793-G-T 12267089-G-T **
14396591-T-A 12275887-T-A **
14465380-A-G 12344653-A-G **
14465388-T-C 12344661-T-C **
14465391-C-A 12344664-C-A **
14465398-C-T 12344671-C-T **
14513934-T-C 12402139-T-C **
14537753-G-T 12425954-G-T **
14561853-A-T 12450054-A-T **
14627740-C-A 12515808-C-A **
14718127-T-G 12606195-T-G **
14718134-C-A 12606202-C-A **
14736095-C-A 12624163-C-A **
14776912-T-A 12664981-T-A **
14776915-T-A 12664984-T-A **
14781019-A-C 12669089-A-C **
14785730-C-A 12673800-C-A **
14786351-A-C 12674421-A-C **
14786402-C-A 12674472-C-A **
14788122-C-A 12676193-C-A **
14842439-C-T 12730505-C-T FT401569 **
15047509-T-A 12935600-T-A 6×TTCC**
15092336-T-A 12980425-T-A **
15197530-T-A 13085616-T-A **
15242556-C-A 13130642-C-A **
15288581-A-T 13176680-A-T **
15320621-AAGGGGG-A 13208727-AAGGGGG-A **
15365894-C-A 13254014-C-A **
15411308-CAAAAA-C 13299428-CAAAAA-C 30×A**
15503331-C-G 13391451-C-G **
15626711-T-G 13514831-T-G **
15658042-T-TTA 13546162-T-TTA **
15749248-C-A 13637368-C-A **
15761914-GT-G 13650034-GT-G **
15770210-T-A 13658330-T-A **
15786100-C-A 13674220-C-A **
15803946-G-T 13692066-G-T **
15860172-C-A 13748292-C-A **
15936959-G-T 13825079-G-T **
16000909-G-T 13889029-G-T **
16017557-C-A 13905677-C-A **
16028269-C-A 13916389-C-A **
16092567-G-T 13980687-G-T **
16099920-A-T 13988040-A-T P8_Prx **
16170414-C-A 14058534-C-A **
16180913-A-T 14069033-A-T **
16180972-G-C 14069092-G-C **
16199766-T-G 14087886-T-G **
16379116-G-T 14267236-G-T **
16430918-C-G 14319038-C-G **
16522463-C-A 14410583-C-A **
16654800-A-C 14542920-A-C **
16692817-T-A 14580937-T-A **
16746185-C-A 14634305-C-A **
16970332-A-T 14858452-A-T **
17323628-G-A 15211748-G-A **
17362714-C-A 15250834-C-A **
17367614-A-T 15255734-A-T **
17374449-G-A 15262569-G-A **
17450488-T-A 15338608-T-A **
17478831-C-A 15366951-C-A **
17505572-C-A 15393692-C-A **
17616779-G-T 15504899-G-T **
17624424-A-T 15512544-A-T **
17653866-C-A 15541986-C-A **
17716894-C-A 15605014-C-A **
17836612-G-T 15724732-G-T **
17994940-T-G 15883060-T-G P7_Prx **
18210828-C-A 16098948-C-A **
18215879-C-A 16103999-C-A **
18232051-G-C 16120171-G-C **
18390227-C-A 16278347-C-A P6_Gap **
18626190-T-C 16514310-T-C **
18628294-C-A 16516414-C-A **
18647658-C-G 16535778-C-G **
18710399-T-A 16598519-T-A **
18792074-G-T 16680194-G-T **
18911121-A-C 16799241-A-C **
19056363-C-A 16944483-C-A **
19079310-C-A 16967430-C-A **
19082497-C-A 16970617-C-A **
19129297-C-A 17017417-C-A **
19187456-T-TG 17075576-T-TG **
19247187-C-A 17135307-C-A **
19250084-A-G 17138204-A-G **
19301043-C-G 17189163-C-G **
19361117-CA-C 17249237-CA-C **
19361147-C-A 17249267-C-A **
19413341-C-A 17301461-C-A **
19439616-AC-A 17327736-AC-A **
19522846-C-A 17410966-C-A BY129773 **
20677007-G-T 18515121-G-T P4_Prx **
20677020-T-A 18515134-T-A P4_Prx **
20689806-C-A 18527920-C-A P4_Prx **
20689815-A-T 18527929-A-T P4_Prx 23×T**
20715638-G-T 18553752-G-T P4_Prx **
20715640-G-T 18553754-G-T P4_Prx **
20715642-C-A 18553756-C-A P4_Prx **
20770242-G-T 18608356-G-T P4_Prx **
20770270-A-T 18608384-A-T P4_Prx **
20770299-G-T 18608413-G-T P4_Prx **
20780329-T-A 18618443-T-A P4_Prx **
20780348-G-T 18618462-G-T P4_Prx **
20780391-T-A 18618505-T-A P4_Prx **
20830340-C-G 18668454-C-G P4_Gap **
20989419-A-T 18827533-A-T P4_Dst **
21068325-G-A 18906439-G-A **
21108142-G-T 18946256-G-T **
21122810-A-T 18960924-A-T **
21122820-G-C 18960934-G-C **
21136019-C-A 18974133-C-A **
21155066-A-C 18993180-A-C **
21245372-C-A 19083486-C-A **
21269050-A-G 19107164-A-G **
21308271-C-A 19146385-C-A **
21334002-C-A 19172116-C-A **
21501816-A-G 19339930-A-G **
21522146-A-G 19360260-A-G **
21524178-C-A 19362292-C-A **
21629477-CCATG-C 19467591-CCATG-C **
21708290-C-A 19546404-C-A **
21790058-G-T 19628172-G-T **
21836323-T-C 19674437-T-C **
21886389-C-A 19724503-C-A **
21888548-C-A 19726662-C-A **
21899737-T-A 19737851-T-A **
22011324-T-C 19849438-T-C **
22011329-T-C 19849443-T-C **
22011332-C-G 19849446-C-G **
22011335-C-G 19849449-C-G **
22011359-T-C 19849473-T-C **
22077971-C-A 19916085-C-A **
22085829-C-A 19923943-C-A **
22088864-C-A 19926978-C-A **
22101990-T-A 19940104-T-A **
22124056-T-G 19962170-T-G **
22447009-T-C 20285123-T-C DYZ19 **
23009479-C-CT 20847593-C-CT **
23052510-T-A 20890624-T-A **
23096600-C-A 20934714-C-A **
23126672-C-G 20964786-C-G **
23145412-A-C 20983526-A-C **
23198714-G-T 21036828-G-T **
23198721-T-G 21036835-T-G **
23211698-G-T 21049812-G-T **
23249396-C-A 21087510-C-A **
23355218-C-A 21193332-C-A **
23371981-C-A 21210095-C-A **
23419291-C-A 21257405-C-A **
23482897-A-G 21321011-A-G **
23569219-C-A 21407333-C-A **
23793426-G-T 21631540-G-T **
23831403-G-T 21669517-G-T **
23831405-C-A 21669519-C-A **
23831434-A-AT 21669548-A-AT **
23831458-G-A 21669572-G-A **
23832981-C-T 21671095-C-T **
23837520-A-C 21675634-A-C **
21752520-CAG-C **
21754813-G-T **
23952556-C-A 21806409-C-A **
24290795-A-T 22144648-A-T P3_t1 **
24433351-C-A 22287204-C-A **
24512832-G-T 22366685-G-T **
25317105-G-C 23170958-G-C P2_r1 **
25317129-C-A 23170982-C-A P2_r1 **
25429814-G-T 23283667-G-T P2_r2 **
25990623-TG-T 23844476-TG-T P1_Y1 **
27185874-A-T 25039727-A-T P1_g3 **
27185923-A-T 25039776-A-T P1_g3 **
27917502-C-A 25771355-C-A P1_Y2 **
27988076-C-G 25841929-C-G P1_Y2 **
27988136-C-A 25841989-C-A P1_Y2 **
28516791-C-A 26370644-C-A **
28547275-C-A 26401128-C-A **
28547957-C-A 26401810-C-A **
28589273-T-G 26443126-T-G **
28602266-C-A 26456119-C-A **
28609071-A-C 26462924-A-C **
28699870-G-T 26553723-G-T **
28699889-C-A 26553742-C-A **
28737799-T-C 26591652-T-C **
28766219-C-A 26620072-C-A **
28772989-A-T 26626842-A-T **
28779585-A-T 26633438-A-T **
28798712-T-A 26652565-T-A **
56840158-C-A **
56841249-C-A **
56842340-C-A **
56846140-G-A **
56861155-G-T **
56885813-C-A **
25885852-A-AAAGG 23739705-A-AAAGG P1_Y1 7×AAGG***
13456187-T-A 11300511-T-A ***
9885733-G-A 10048124-G-A ***
18886683-CCCTT-C 16774803-CCCTT-C 4×CCTT***
6792628-CAAAAAA-C 6924587-CAAAAAA-C 18×A***
56724773-G-T ***
22849491-CTTT-C,CTT 20687605-CTTT-C,CTT 20×T***
13644276-C-A 11488600-C-A ***
21691491-TA-T 19529605-TA-T 9×A***
8706675-CAGAGAG-C 8838634-CAGAGAG-C 15×AG***
13811156-A-T 11690450-A-T DYZ17 ***
10666961-T-C ***
56685536-CAATGG-C 4×AATGG***
13450414-CATTCCATTCCATTCT-C 11294738-CATTCCATTCCATTCT-C ***
15057126-CT-C 12945218-CT-C 9×T***
56834383-C-CGTTCA ***
16729492-C-A 14617612-C-A ***
22857884-C-A 20695998-C-A ***
56830759-CCATTCTATCCCATTC-C,CCATTCTATCCCATTG ***
13811157-T-C 11690451-T-C DYZ17 ***
2649524-C-A 2781483-C-A ***
21490373-ATT-A,AT 19328487-ATT-A,AT 15×T***
10987851-T-A ***
19393424-A-AT 17281544-A-AT 10×T***
14517575-C-A 12405776-C-A ***
19486859-CTT-C,CTTT 17374979-CTT-C,CTTT 16×T***
16642063-C-A 14530183-C-A ***
13468837-C-A 11313161-C-A ***
15975124-C-A 13863244-C-A FT138973 ***
21528355-G-T 19366469-G-T ***
5204640-CCA-C 5336599-CCA-C ***
23272252-G-T 21110366-G-T ***
8650098-A-AAG 8782057-A-AAG ***
13821178-G-C 11700472-G-C DYZ17 ***
13821183-G-T 11700477-G-T DYZ17 ***
2750839-CA-C,CAA 2882798-CA-C,CAA 16×A***
21362117-C-A 19200231-C-A ***
8649780-C-A 8781739-C-A ***
5785654-T-TAA 5917613-T-TAA 24×A***
15499374-C-A 13387494-C-A ***
22722556-C-A 20560670-C-A ***
3651002-G-T 3782961-G-T ***
6149599-G-T 6281558-G-T IR3_Dst ***
7862185-G-T 7994144-G-T ***
9456518-G-T 9618909-G-T ***
9944075-G-T 10106466-G-T ***
10761115-C-A ***
10869997-C-A ***
10889307-C-A ***
10999874-CA-C ***
11033855-CCATTC-C,CCA ***
13216385-G-T 11060709-G-T ***
13461006-T-A 11305330-T-A ***
13463535-G-T 11307859-G-T ***
11656197-A-G DYZ17 ***
13809171-G-T 11688465-G-T DYZ17 ***
13811164-G-GAATCC 11690458-G-GAATCC DYZ17 ***
14356928-C-A 12236223-C-A ***
14424046-G-T 12303321-G-T ***
14440140-C-A 12319413-C-A ***
15176627-C-A 13064713-C-A ***
15307541-CCCTCC-C,CCCTCT 13195643-CCCTCC-C,CCCTCT ***
15677404-G-T 13565524-G-T ***
15739643-C-A 13627763-C-A ***
15743172-C-A 13631292-C-A ***
17399887-C-A 15288007-C-A ***
18627899-C-A 16516019-C-A ***
18710484-G-T 16598604-G-T ***
18756079-G-T 16644199-G-T ***
19201407-C-A 17089527-C-A ***
19293824-C-A 17181944-C-A ***
21354234-C-A 19192348-C-A ***
21425339-CTTTTT-C,CTT 19263453-CTTTTT-C,CTT 24×T***
21483444-C-A 19321558-C-A ***
21888539-C-A 19726653-C-A ***
21960510-C-A 19798624-C-A ***
22972975-C-A 20811089-C-A ***
23282319-AAAAT-A 21120433-AAAAT-A 4×AAAT***
23464514-C-A 21302628-C-A ***
23770085-G-T 21608199-G-T ***
24406799-C-A 22260652-C-A ***
56832475-TCCATTCCATTCCATTCCACC-T,TATATTCCATTCCATTCCACT ***
56850754-C-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.