Mendonça
BigY2: 742597MDKA Birth:

Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
Position | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 742597 |
---|---|---|---|---|---|---|---|
hg19:Y:6343028-G-A hg38:Y:6474987-G-A | A* | ||||||
hg19:Y:20053166-A-G hg38:Y:17941286-A-G | P5_Prx | A* | |||||
hg19:Y:24265332-G-A hg38:Y:22119185-G-A | P3_b1 | A* | |||||
hg19:Y:25951466-A-C hg38:Y:23805319-A-C | P1_Y1 | A* | |||||
hg19:Y:28816711-T-C hg38:Y:26670564-T-C | A* | ||||||
hg19:Y:14415575-A-. hg38:Y:12294872-T-A | BY3171 | M11806 | Y | Y | + | ||
hg19:Y:7270586-G-A hg38:Y:7402545-G-A | Y138636 | Y | Y | + | |||
hg19:Y:8087445-C-T hg38:Y:8219404-C-T | Y138657 | Y | Y | + | |||
hg19:Y:9756632-G-GA hg38:Y:9919023-G-GA | 8×A | + | |||||
hg19:Y:9775398-A-G hg38:Y:9937789-A-G | Y138616 | Y | + | ||||
hg19:Y:14037001-A-T hg38:Y:11916295-A-T | Y138664 | Y | Y | + | |||
hg19:Y:14189706-A-G hg38:Y:12069000-A-G | Y138666 | Y | Y | + | |||
hg19:Y:14527866-G-A hg38:Y:12416067-G-A | Y138668 | Y | Y | + | |||
hg19:Y:15340210-C-T hg38:Y:13228328-C-T | Y138686 | Y | Y | + | |||
hg19:Y:15964519-C-A hg38:Y:13852639-C-A | BY105166 | Y | Y | + | |||
hg19:Y:16338152-G-A hg38:Y:14226272-G-A | M9894 | Y | Y | + | |||
hg19:Y:16712110-G-T hg38:Y:14600230-G-T | Y138639 | Y | Y | + | |||
hg19:Y:17862572-T-C hg38:Y:15750692-T-C | Y138695 | Y | Y | + | |||
hg19:Y:19309314-A-G hg38:Y:17197434-A-G | Y138648 | Y | Y | + | |||
hg19:Y:19496611-A-G hg38:Y:17384731-A-G | Y138674 | Y | Y | + | |||
hg19:Y:21167831-TA-T hg38:Y:19005945-TA-T | + | ||||||
hg19:Y:21610242-G-T hg38:Y:19448356-G-T | BY134166 | Y | Y | + | |||
hg19:Y:22256372-G-T hg38:Y:20094486-G-T | DYZ19 | + | |||||
hg19:Y:22477906-G-A hg38:Y:20316020-G-A | BY223922 | DYZ19 | + | ||||
hg19:Y:23959290-C-A hg38:Y:21813143-C-A | Y138599 | Y | + | ||||
hg19:Y:23979590-C-CA hg38:Y:21833443-C-CA | + | ||||||
hg19:Y:24891639-C-G hg38:Y:22745492-C-G | BY226362 | g1 | + | ||||
hg19:Y:22234042-C-A hg38:Y:20072156-C-A | DYZ19 | * | |||||
hg19:Y:14062811-T-C hg38:Y:11942105-T-C | BY20656 | Y | Y | * | |||
hg19:Y:22278848-G-T hg38:Y:20116962-G-T | DYZ19 | * | |||||
hg19:Y:17637638-AACACAC-A,AAC hg38:Y:15525758-AACACAC-A,AAC | 21×AC | * | |||||
hg19:Y:22280832-A-T hg38:Y:20118946-A-T | BY171776 | DYZ19 | * | ||||
hg19:Y:13720724-T-G hg38:Y:11565048-T-G | DYZ17 | ** | |||||
hg19:Y:13457781-G-T hg38:Y:11302105-G-T | ** | ||||||
hg19:Y:13838386-G-T hg38:Y:11717680-G-T | DYZ17 | ** | |||||
hg19:Y:22337669-C-T hg38:Y:20175783-C-T | DYZ19 | ** | |||||
hg19:Y:2772512-CA-C hg38:Y:2904471-CA-C | 25×A | ** | |||||
hg19:Y:17794272-CTT-C hg38:Y:15682392-CTT-C | ** | ||||||
hg19:Y:4957647-C-A hg38:Y:5089606-C-A | ** | ||||||
hg19:Y:22277524-C-T hg38:Y:20115638-C-T | DYZ19 | ** | |||||
hg19:Y:22235541-C-A hg38:Y:20073655-C-A | BY174683 | DYZ19 | ** | ||||
hg19:Y:22816365-TCAA-T hg38:Y:20654479-TCAA-T | ** | ||||||
hg19:Y:20865487-GTATATA-G hg38:Y:18703601-GTATATA-G | P4_Dst | 9×TA | ** | ||||
hg19:Y:18593296-C-T hg38:Y:16481416-C-T | Y138658 | ** | |||||
hg19:Y:13486640-T-A hg38:Y:11330964-T-A | ** | ||||||
hg38:Y:10781340-A-T | ** | ||||||
hg19:Y:23259235-C-A hg38:Y:21097349-C-A | ** | ||||||
hg38:Y:10768660-T-G | ** | ||||||
hg38:Y:11038102-C-A | ** | ||||||
hg38:Y:10772428-T-C | ** | ||||||
hg19:Y:28815154-G-C hg38:Y:26669007-G-C | ** | ||||||
hg38:Y:10926672-C-A | ** | ||||||
hg38:Y:10768650-T-C | ** | ||||||
hg38:Y:10768656-T-C | ** | ||||||
hg38:Y:10768665-T-C | ** | ||||||
hg38:Y:10768670-T-C | ** | ||||||
hg38:Y:10768674-A-G | ** | ||||||
hg38:Y:10817863-A-T | ** | ||||||
hg38:Y:10685529-C-T | ** | ||||||
hg38:Y:10967542-C-T | ** | ||||||
hg19:Y:28815149-C-T hg38:Y:26669002-C-T | ** | ||||||
hg38:Y:10967518-C-CACTGA | ** | ||||||
hg19:Y:19486877-A-T hg38:Y:17374997-A-T | ** | ||||||
hg19:Y:24870883-C-A hg38:Y:22724736-C-A | IR1_R | ** | |||||
hg38:Y:10755334-C-A | ** | ||||||
hg19:Y:4887612-C-A hg38:Y:5019571-C-A | 29×A | ** | |||||
hg38:Y:10808038-C-CTCCGA | ** | ||||||
hg38:Y:10808063-C-T | ** | ||||||
hg38:Y:10950529-G-T | ** | ||||||
hg38:Y:10988502-C-T | ** | ||||||
hg38:Y:10988555-C-T | ** | ||||||
hg38:Y:10988571-A-G | ** | ||||||
hg19:Y:28504688-C-A hg38:Y:26358541-C-A | ** | ||||||
hg38:Y:11038092-C-A | ** | ||||||
hg19:Y:13486626-G-T hg38:Y:11330950-G-T | ** | ||||||
hg38:Y:10935591-CCATTCCAT-C | ** | ||||||
hg38:Y:11036120-TTCTCC-T | ** | ||||||
hg19:Y:8807529-C-A hg38:Y:8939488-C-A | ** | ||||||
hg19:Y:28818351-C-G hg38:Y:26672204-C-G | ** | ||||||
hg19:Y:28814979-G-A hg38:Y:26668832-G-A | ** | ||||||
hg38:Y:11022979-C-A | ** | ||||||
hg38:Y:11007504-T-A | ** | ||||||
hg38:Y:10768639-ATTCAG-A | ** | ||||||
hg38:Y:10787936-T-G | ** | ||||||
hg38:Y:10926694-A-ACTC | ** | ||||||
hg19:Y:28612205-C-A hg38:Y:26466058-C-A | ** | ||||||
hg19:Y:21495359-C-A hg38:Y:19333473-C-A | Y138603 | ** | |||||
hg19:Y:13588324-C-A hg38:Y:11432648-C-A | ** | ||||||
hg19:Y:20326061-T-A hg38:Y:18164175-T-A | P5_Dst | ** | |||||
hg19:Y:17122193-C-A hg38:Y:15010313-C-A | ** | ||||||
hg19:Y:21334658-C-A hg38:Y:19172772-C-A | ** | ||||||
hg19:Y:27263195-C-A hg38:Y:25117048-C-A | P1_g3 | ** | |||||
hg38:Y:10909725-T-A | ** | ||||||
hg38:Y:10987862-T-G | ** | ||||||
hg38:Y:10754907-C-T | ** | ||||||
hg19:Y:21069990-C-A hg38:Y:18908104-C-A | ** | ||||||
hg38:Y:10932952-C-T | ** | ||||||
hg38:Y:10932980-C-A | ** | ||||||
hg38:Y:10932984-G-C | ** | ||||||
hg19:Y:6771619-C-A hg38:Y:6903578-C-A | ** | ||||||
hg38:Y:10961261-T-C | ** | ||||||
hg38:Y:10961273-G-T | ** | ||||||
hg38:Y:10961309-C-T | ** | ||||||
hg38:Y:10952139-A-C | ** | ||||||
hg19:Y:2795559-GTTTTT-G hg38:Y:2927518-GTTTTT-G | 24×T | ** | |||||
hg19:Y:6384709-A-C hg38:Y:6516668-A-C | ** | ||||||
hg38:Y:11676825-T-A | DYZ17 | ** | |||||
hg38:Y:10755376-C-A | ** | ||||||
hg19:Y:19280733-C-A hg38:Y:17168853-C-A | ** | ||||||
hg38:Y:10801711-C-A | ** | ||||||
hg19:Y:17118395-C-CTT hg38:Y:15006515-C-CTT | 16×T | ** | |||||
hg38:Y:10927881-T-A | ** | ||||||
hg38:Y:10927889-C-T | ** | ||||||
hg38:Y:10927891-T-C | ** | ||||||
hg38:Y:10909688-G-T | ** | ||||||
hg38:Y:10692475-C-T | ** | ||||||
hg38:Y:10961248-T-C | ** | ||||||
hg38:Y:10961284-T-C | ** | ||||||
hg38:Y:10961302-A-G | ** | ||||||
hg38:Y:11022946-C-T | ** | ||||||
hg38:Y:11022977-C-A | ** | ||||||
hg19:Y:13454622-T-G hg38:Y:11298946-T-G | ** | ||||||
hg19:Y:26114642-GACAC-G hg38:Y:23968495-GACAC-G | P1_Y1 | 9×AC | ** | ||||
hg38:Y:11007493-C-A | ** | ||||||
hg38:Y:10861233-T-G | ** | ||||||
hg38:Y:10954192-G-T | ** | ||||||
hg38:Y:10974366-G-T | ** | ||||||
hg38:Y:10987609-C-A | ** | ||||||
hg38:Y:10859983-C-A | ** | ||||||
hg38:Y:10932945-A-T | ** | ||||||
hg19:Y:20951196-T-TA hg38:Y:18789310-T-TA | P4_Dst | ** | |||||
hg19:Y:6457789-C-A hg38:Y:6589748-C-A | ** | ||||||
hg19:Y:28767088-CT-C hg38:Y:26620941-CT-C | 8×T | ** | |||||
hg19:Y:17478882-C-A hg38:Y:15367002-C-A | ** | ||||||
hg19:Y:14581032-C-A hg38:Y:12469232-C-A | ** | ||||||
hg19:Y:10033046-C-A hg38:Y:10195437-C-A | ** | ||||||
hg19:Y:14000440-C-A hg38:Y:11879734-C-A | ** | ||||||
hg38:Y:56830266-T-C | ** | ||||||
hg38:Y:10927871-C-A | ** | ||||||
hg19:Y:4781060-G-T hg38:Y:4913019-G-T | ** | ||||||
hg19:Y:17355560-C-A hg38:Y:15243680-C-A | ** | ||||||
hg19:Y:14557581-G-T hg38:Y:12445782-G-T | ** | ||||||
hg38:Y:10691053-C-T | ** | ||||||
hg38:Y:10935619-T-A | ** | ||||||
hg38:Y:10955288-C-T | ** | ||||||
hg19:Y:6310933-T-A hg38:Y:6442892-T-A | IR3_Dst | ** | |||||
hg38:Y:10754927-C-A | ** | ||||||
hg19:Y:13257585-C-A hg38:Y:11101909-C-A | ** | ||||||
hg19:Y:15662869-C-A hg38:Y:13550989-C-A | ** | ||||||
hg19:Y:9980640-C-A hg38:Y:10143031-C-A | ** | ||||||
hg19:Y:15882073-TCAAAA-T hg38:Y:13770193-TCAAAA-T | ** | ||||||
hg38:Y:10951732-T-C | ** | ||||||
hg19:Y:3728601-G-T hg38:Y:3860560-G-T | ** | ||||||
hg38:Y:10926697-C-CTG | ** | ||||||
hg38:Y:10688004-C-T | ** | ||||||
hg19:Y:28815179-G-T hg38:Y:26669032-G-T | ** | ||||||
hg19:Y:19137573-T-G hg38:Y:17025693-T-G | ** | ||||||
hg19:Y:7093777-C-A hg38:Y:7225736-C-A | ** | ||||||
hg38:Y:10996071-G-C | ** | ||||||
hg38:Y:10787940-A-T | ** | ||||||
hg38:Y:10952092-CTGCAT-C | ** | ||||||
hg38:Y:10952119-T-C | ** | ||||||
hg19:Y:13461004-C-A hg38:Y:11305328-C-A | ** | ||||||
hg38:Y:10898485-TTCCAC-T | ** | ||||||
hg19:Y:19754958-T-G hg38:Y:17643078-T-G | P5_Prx | ** | |||||
hg19:Y:18305908-A-C hg38:Y:16194028-A-C | P6_Prx | ** | |||||
hg38:Y:10755361-C-A | ** | ||||||
hg38:Y:10954158-C-A | ** | ||||||
hg19:Y:14152277-C-A hg38:Y:12031571-C-A | ** | ||||||
hg19:Y:21895600-TAA-T hg38:Y:19733714-TAA-T | 12×A | ** | |||||
hg38:Y:10764833-C-A | ** | ||||||
hg19:Y:26099821-CCCTT-C hg38:Y:23953674-CCCTT-C | P1_Y1 | ** | |||||
hg38:Y:10996110-G-C | ** | ||||||
hg19:Y:28816085-G-A hg38:Y:26669938-G-A | ** | ||||||
hg38:Y:10764825-A-T | ** | ||||||
hg19:Y:13480816-C-A hg38:Y:11325140-C-A | ** | ||||||
hg19:Y:13940993-C-A hg38:Y:11820287-C-A | ** | ||||||
hg19:Y:21391650-CTTTT-C hg38:Y:19229764-CTTTT-C | 14×T | ** | |||||
hg19:Y:7391806-C-A hg38:Y:7523765-C-A | ** | ||||||
hg19:Y:7101563-C-A hg38:Y:7233522-C-A | ** | ||||||
hg19:Y:24582354-T-TC hg38:Y:22436207-T-TC | P3_t2 | ** | |||||
hg19:Y:3347043-C-A hg38:Y:3479002-C-A | ** | ||||||
hg38:Y:11007530-T-C | ** | ||||||
hg19:Y:14065546-C-A hg38:Y:11944840-C-A | ** | ||||||
hg19:Y:19246919-C-A hg38:Y:17135039-C-A | ** | ||||||
hg19:Y:23056165-C-A hg38:Y:20894279-C-A | ** | ||||||
hg38:Y:10878359-C-A | ** | ||||||
hg19:Y:13480808-C-G hg38:Y:11325132-C-G | ** | ||||||
hg19:Y:4178553-C-A hg38:Y:4310512-C-A | ** | ||||||
hg19:Y:22335146-A-G hg38:Y:20173260-A-G | DYZ19 | ** | |||||
hg38:Y:10692496-G-T | ** | ||||||
hg38:Y:10815325-T-C | ** | ||||||
hg19:Y:21324113-G-T hg38:Y:19162227-G-T | ** | ||||||
hg19:Y:23208106-C-A hg38:Y:21046220-C-A | ** | ||||||
hg38:Y:11003740-C-A | ** | ||||||
hg38:Y:10860037-A-G | ** | ||||||
hg19:Y:28815176-G-A hg38:Y:26669029-G-A | ** | ||||||
hg19:Y:7301685-C-A hg38:Y:7433644-C-A | ** | ||||||
hg19:Y:5785863-C-A hg38:Y:5917822-C-A | ** | ||||||
hg19:Y:9761146-C-A hg38:Y:9923537-C-A | ** | ||||||
hg38:Y:10787902-T-C | ** | ||||||
hg38:Y:10927861-G-TCCAT | ** | ||||||
hg19:Y:22088842-C-A hg38:Y:19926956-C-A | ** | ||||||
hg19:Y:17752012-C-A hg38:Y:15640132-C-A | ** | ||||||
hg19:Y:19466981-C-A hg38:Y:17355101-C-A | ** | ||||||
hg19:Y:19827342-G-T hg38:Y:17715462-G-T | P5_Prx | ** | |||||
hg19:Y:5393262-A-G hg38:Y:5525221-A-G | ** | ||||||
hg38:Y:10628485-C-T | ** | ||||||
hg38:Y:10628491-T-C | ** | ||||||
hg38:Y:10628495-C-T | ** | ||||||
hg19:Y:14385213-C-A hg38:Y:12264509-C-A | ** | ||||||
hg38:Y:10747982-A-T | ** | ||||||
hg38:Y:56839004-C-A | ** | ||||||
hg38:Y:10692481-C-A | ** | ||||||
hg19:Y:6402716-G-C hg38:Y:6534675-G-C | ** | ||||||
hg19:Y:15321328-G-GTTT hg38:Y:13209446-G-GTTT | 25×T | ** | |||||
hg19:Y:13485704-A-T hg38:Y:11330028-A-T | ** | ||||||
hg19:Y:27647541-A-C hg38:Y:25501394-A-C | P1_Y2 | ** | |||||
hg19:Y:6310918-C-A hg38:Y:6442877-C-A | IR3_Dst | ** | |||||
hg19:Y:7572876-A-G hg38:Y:7704835-A-G | ** | ||||||
hg19:Y:27861064-C-A hg38:Y:25714917-C-A | P1_Y2 | ** | |||||
hg38:Y:56847482-G-T | ** | ||||||
hg19:Y:6279333-T-G hg38:Y:6411292-T-G | IR3_Dst | ** | |||||
hg38:Y:9111002-G-T | ** | ||||||
hg19:Y:23779815-C-A hg38:Y:21617929-C-A | ** | ||||||
hg19:Y:20698722-T-G hg38:Y:18536836-T-G | P4_Prx | ** | |||||
hg19:Y:3079519-C-A hg38:Y:3211478-C-A | ** | ||||||
hg19:Y:16319675-C-A hg38:Y:14207795-C-A | ** | ||||||
hg19:Y:3158812-A-T hg38:Y:3290771-A-T | ** | ||||||
hg19:Y:9996489-C-A hg38:Y:10158880-C-A | ** | ||||||
hg19:Y:17864891-C-A hg38:Y:15753011-C-A | ** | ||||||
hg38:Y:56837789-A-T | ** | ||||||
hg19:Y:15212375-GATTA-G hg38:Y:13100461-GATTA-G | ** | ||||||
hg38:Y:10973614-T-TTGAAC | ** | ||||||
hg19:Y:18503192-A-C hg38:Y:16391312-A-C | P6_Dst | 18×T | ** | ||||
hg38:Y:10756977-T-C | ** | ||||||
hg19:Y:13480807-G-C hg38:Y:11325131-G-C | ** | ||||||
hg19:Y:2708733-C-A hg38:Y:2840692-C-A | ** | ||||||
hg19:Y:2745842-T-A hg38:Y:2877801-T-A | ** | ||||||
hg19:Y:2758860-A-T hg38:Y:2890819-A-T | ** | ||||||
hg19:Y:2774863-C-A hg38:Y:2906822-C-A | ** | ||||||
hg19:Y:3256383-C-T hg38:Y:3388342-C-T | FT106623 | ** | |||||
hg19:Y:3467078-C-A hg38:Y:3599037-C-A | ** | ||||||
hg19:Y:3542683-T-G hg38:Y:3674642-T-G | ** | ||||||
hg19:Y:3640909-G-T hg38:Y:3772868-G-T | ** | ||||||
hg19:Y:3707219-G-T hg38:Y:3839178-G-T | ** | ||||||
hg19:Y:3849348-C-A hg38:Y:3981307-C-A | ** | ||||||
hg19:Y:3853808-A-T hg38:Y:3985767-A-T | ** | ||||||
hg19:Y:4686769-G-A hg38:Y:4818728-G-A | ** | ||||||
hg19:Y:4778200-TA-T hg38:Y:4910159-TA-T | 11×A | ** | |||||
hg19:Y:4784494-A-C hg38:Y:4916453-A-C | ** | ||||||
hg19:Y:5170375-T-G hg38:Y:5302334-T-G | ** | ||||||
hg19:Y:5194543-T-C hg38:Y:5326502-T-C | ** | ||||||
hg19:Y:5221219-A-C hg38:Y:5353178-A-C | ** | ||||||
hg19:Y:5242525-T-C hg38:Y:5374484-T-C | ** | ||||||
hg19:Y:5285520-C-A hg38:Y:5417479-C-A | ** | ||||||
hg19:Y:5522803-G-A hg38:Y:5654762-G-A | ** | ||||||
hg19:Y:5601074-C-A hg38:Y:5733033-C-A | ** | ||||||
hg19:Y:5782040-C-A hg38:Y:5913999-C-A | ** | ||||||
hg19:Y:6347848-G-C hg38:Y:6479807-G-C | ** | ||||||
hg19:Y:6359639-CT-C hg38:Y:6491598-CT-C | ** | ||||||
hg19:Y:6402720-T-C hg38:Y:6534679-T-C | ** | ||||||
hg19:Y:6463342-C-T hg38:Y:6595301-C-T | ** | ||||||
hg19:Y:6651551-G-T hg38:Y:6783510-G-T | ** | ||||||
hg19:Y:7105186-C-A hg38:Y:7237145-C-A | ** | ||||||
hg19:Y:7243556-C-A hg38:Y:7375515-C-A | ** | ||||||
hg19:Y:7255010-T-C hg38:Y:7386969-T-C | ** | ||||||
hg19:Y:7282230-C-A hg38:Y:7414189-C-A | ** | ||||||
hg19:Y:7397598-C-A hg38:Y:7529557-C-A | ** | ||||||
hg19:Y:7397646-C-A hg38:Y:7529605-C-A | ** | ||||||
hg19:Y:7397737-T-G hg38:Y:7529696-T-G | ** | ||||||
hg19:Y:7471189-C-A hg38:Y:7603148-C-A | IR1_L | ** | |||||
hg19:Y:7475160-G-T hg38:Y:7607119-G-T | IR1_L | ** | |||||
hg19:Y:7483687-C-A hg38:Y:7615646-C-A | IR1_L | ** | |||||
hg19:Y:7483696-G-T hg38:Y:7615655-G-T | IR1_L | ** | |||||
hg19:Y:7534642-A-C hg38:Y:7666601-A-C | ** | ||||||
hg19:Y:7756406-T-G hg38:Y:7888365-T-G | ** | ||||||
hg19:Y:8218045-C-G hg38:Y:8350004-C-G | ** | ||||||
hg19:Y:8376339-T-G hg38:Y:8508298-T-G | ** | ||||||
hg19:Y:8855789-A-C hg38:Y:8987748-A-C | FT360228 | ** | |||||
hg19:Y:8913622-G-T hg38:Y:9045581-G-T | ** | ||||||
hg38:Y:9125617-T-A | ** | ||||||
hg19:Y:9023181-CTGT-C hg38:Y:9185572-CTGT-C | ** | ||||||
hg19:Y:9465245-CCCAGATTCAAGCAATTCCCCT-C hg38:Y:9627636-CCCAGATTCAAGCAATTCCCCT-C | ** | ||||||
hg19:Y:9811077-C-A hg38:Y:9973468-C-A | ** | ||||||
hg19:Y:9948756-G-T hg38:Y:10111147-G-T | ** | ||||||
hg19:Y:9975075-T-G hg38:Y:10137466-T-G | ** | ||||||
hg19:Y:10033141-A-C hg38:Y:10195532-A-C | ** | ||||||
hg38:Y:10628477-A-C | ** | ||||||
hg38:Y:10657394-C-T | ** | ||||||
hg38:Y:10666240-C-T | ** | ||||||
hg38:Y:10682477-C-T | ** | ||||||
hg38:Y:10685544-T-TCCCAC | ** | ||||||
hg38:Y:10689227-C-A | ** | ||||||
hg38:Y:10691037-C-G | ** | ||||||
hg38:Y:10692486-C-T | ** | ||||||
hg38:Y:10692523-A-C | ** | ||||||
hg38:Y:10746484-G-T | ** | ||||||
hg38:Y:10756974-C-G | ** | ||||||
hg38:Y:10760979-A-T | ** | ||||||
hg38:Y:10764814-G-T | ** | ||||||
hg38:Y:10764824-C-G | ** | ||||||
hg38:Y:10768606-ACCGTT-A | ** | ||||||
hg38:Y:10772436-C-CA | ** | ||||||
hg38:Y:10772438-T-TCCACCCCAC | ** | ||||||
hg38:Y:10772475-C-T | ** | ||||||
hg38:Y:10776275-A-T | ** | ||||||
hg38:Y:10785036-T-C | ** | ||||||
hg38:Y:10785791-C-A | ** | ||||||
hg38:Y:10785794-T-A | ** | ||||||
hg38:Y:10787900-T-G | ** | ||||||
hg38:Y:10787907-A-C | ** | ||||||
hg38:Y:10787931-C-G | ** | ||||||
hg38:Y:10815311-C-A | ** | ||||||
hg38:Y:10815316-C-A | ** | ||||||
hg38:Y:10815333-C-G | ** | ||||||
hg38:Y:10815340-C-T | ** | ||||||
hg38:Y:10849613-T-A | ** | ||||||
hg38:Y:10849660-C-CTCCAT | ** | ||||||
hg38:Y:10858295-C-G | ** | ||||||
hg38:Y:10889765-C-CGGATG | ** | ||||||
hg38:Y:10895571-G-A | ** | ||||||
hg38:Y:10895573-T-C | ** | ||||||
hg38:Y:10895581-C-T | ** | ||||||
hg38:Y:10895582-A-G | ** | ||||||
hg38:Y:10895590-A-C | ** | ||||||
hg38:Y:10898610-T-G | ** | ||||||
hg38:Y:10909697-T-C | ** | ||||||
hg38:Y:10917349-C-A | ** | ||||||
hg38:Y:10919956-C-A | ** | ||||||
hg38:Y:10950574-C-G | ** | ||||||
hg38:Y:10952151-ACT-A | ** | ||||||
hg38:Y:10964592-C-T | ** | ||||||
hg38:Y:10987027-A-ATCG | ** | ||||||
hg38:Y:10987029-AT-A | ** | ||||||
hg38:Y:11007508-C-T | ** | ||||||
hg38:Y:11025868-C-A | ** | ||||||
hg38:Y:11029964-G-T | ** | ||||||
hg38:Y:11038078-G-A | ** | ||||||
hg38:Y:11038090-C-G | ** | ||||||
hg19:Y:13243408-G-T hg38:Y:11087732-G-T | ** | ||||||
hg19:Y:13246084-C-CA hg38:Y:11090408-C-CA | ** | ||||||
hg19:Y:13457912-A-T hg38:Y:11302236-A-T | ** | ||||||
hg19:Y:13466288-A-C hg38:Y:11310612-A-C | ** | ||||||
hg19:Y:13475534-C-A hg38:Y:11319858-C-A | ** | ||||||
hg19:Y:13475547-A-C hg38:Y:11319871-A-C | ** | ||||||
hg19:Y:13480798-A-G hg38:Y:11325122-A-G | ** | ||||||
hg19:Y:13480831-A-T hg38:Y:11325155-A-T | ** | ||||||
hg19:Y:13696288-A-C hg38:Y:11540612-A-C | DYZ17 | ** | |||||
hg19:Y:13698764-A-T hg38:Y:11543088-A-T | DYZ17 | ** | |||||
hg38:Y:11650427-G-A | DYZ17 | ** | |||||
hg38:Y:11651593-A-G | DYZ17 | ** | |||||
hg19:Y:13810868-G-C hg38:Y:11690162-G-C | DYZ17 | ** | |||||
hg19:Y:13850309-A-G hg38:Y:11729603-A-G | DYZ17 | ** | |||||
hg19:Y:13857566-G-A hg38:Y:11736860-G-A | DYZ17 | ** | |||||
hg19:Y:13859416-A-ACTCAC hg38:Y:11738710-A-ACTCAC | DYZ17 | ** | |||||
hg19:Y:13888586-A-C hg38:Y:11767880-A-C | ** | ||||||
hg19:Y:13898831-G-C hg38:Y:11778125-G-C | ** | ||||||
hg19:Y:13997799-C-A hg38:Y:11877093-C-A | ** | ||||||
hg19:Y:14007767-C-A hg38:Y:11887061-C-A | ** | ||||||
hg19:Y:14031767-TTTCTTTCTTTC-T hg38:Y:11911061-TTTCTTTCTTTC-T | ** | ||||||
hg19:Y:14034145-G-T hg38:Y:11913439-G-T | ** | ||||||
hg19:Y:14135848-C-A hg38:Y:12015142-C-A | ** | ||||||
hg19:Y:14159687-T-G hg38:Y:12038981-T-G | ** | ||||||
hg19:Y:14402434-A-C hg38:Y:12281731-A-C | ** | ||||||
hg19:Y:14511991-T-A hg38:Y:12400196-T-A | ** | ||||||
hg19:Y:14531654-C-T hg38:Y:12419855-C-T | ** | ||||||
hg19:Y:14606647-G-T hg38:Y:12494849-G-T | ** | ||||||
hg19:Y:14608005-C-A hg38:Y:12496207-C-A | ** | ||||||
hg19:Y:14785156-C-A hg38:Y:12673226-C-A | ** | ||||||
hg19:Y:14985117-A-G hg38:Y:12873185-A-G | ** | ||||||
hg19:Y:14990176-T-G hg38:Y:12878261-T-G | ** | ||||||
hg19:Y:14990186-T-G hg38:Y:12878271-T-G | ** | ||||||
hg19:Y:15147572-G-T hg38:Y:13035659-G-T | ** | ||||||
hg19:Y:15332240-G-T hg38:Y:13220358-G-T | ** | ||||||
hg19:Y:15332256-C-A hg38:Y:13220374-C-A | ** | ||||||
hg19:Y:15648880-G-T hg38:Y:13537000-G-T | ** | ||||||
hg19:Y:15679696-T-G hg38:Y:13567816-T-G | ** | ||||||
hg19:Y:15816468-A-G hg38:Y:13704588-A-G | FT201652 | ** | |||||
hg19:Y:16033370-C-A hg38:Y:13921490-C-A | ** | ||||||
hg19:Y:16041299-G-A hg38:Y:13929419-G-A | ** | ||||||
hg19:Y:16394341-C-A hg38:Y:14282461-C-A | ** | ||||||
hg19:Y:17030615-C-A hg38:Y:14918735-C-A | ** | ||||||
hg19:Y:17071123-G-T hg38:Y:14959243-G-T | ** | ||||||
hg19:Y:17095864-T-G hg38:Y:14983984-T-G | ** | ||||||
hg19:Y:17224340-C-A hg38:Y:15112460-C-A | ** | ||||||
hg19:Y:17251642-T-C hg38:Y:15139762-T-C | ** | ||||||
hg19:Y:17535433-A-G hg38:Y:15423553-A-G | ** | ||||||
hg19:Y:17914291-T-C hg38:Y:15802411-T-C | ** | ||||||
hg19:Y:17942017-C-A hg38:Y:15830137-C-A | ** | ||||||
hg19:Y:18173268-G-A hg38:Y:16061388-G-A | ** | ||||||
hg19:Y:18281023-C-A hg38:Y:16169143-C-A | P6_Prx | ** | |||||
hg19:Y:18305985-G-T hg38:Y:16194105-G-T | P6_Prx | ** | |||||
hg19:Y:18511594-A-ATG hg38:Y:16399714-A-ATG | P6_Dst | ** | |||||
hg19:Y:18527800-C-A hg38:Y:16415920-C-A | P6_Dst | ** | |||||
hg19:Y:18630710-C-A hg38:Y:16518830-C-A | ** | ||||||
hg19:Y:18690298-T-C hg38:Y:16578418-T-C | ** | ||||||
hg19:Y:18730482-C-A hg38:Y:16618602-C-A | ** | ||||||
hg19:Y:19125128-G-T hg38:Y:17013248-G-T | ** | ||||||
hg19:Y:19270537-CAAAAAAAAAAAAAAAA-C hg38:Y:17158657-CAAAAAAAAAAAAAAAA-C | 21×A | ** | |||||
hg19:Y:19509712-A-G hg38:Y:17397832-A-G | ** | ||||||
hg19:Y:19524526-C-A hg38:Y:17412646-C-A | ** | ||||||
hg19:Y:19557241-G-A hg38:Y:17445361-G-A | ** | ||||||
hg19:Y:19754930-T-G hg38:Y:17643050-T-G | P5_Prx | ** | |||||
hg19:Y:19755010-T-C hg38:Y:17643130-T-C | P5_Prx | ** | |||||
hg19:Y:19795278-G-T hg38:Y:17683398-G-T | P5_Prx | ** | |||||
hg19:Y:19902933-T-A hg38:Y:17791053-T-A | P5_Prx | ** | |||||
hg19:Y:19998991-C-A hg38:Y:17887111-C-A | P5_Prx | ** | |||||
hg19:Y:19998999-C-A hg38:Y:17887119-C-A | P5_Prx | ** | |||||
hg19:Y:19999002-G-T hg38:Y:17887122-G-T | P5_Prx | ** | |||||
hg19:Y:20640207-T-G hg38:Y:18478321-T-G | P4_Prx | ** | |||||
hg19:Y:21187912-G-A hg38:Y:19026026-G-A | ** | ||||||
hg19:Y:21202297-T-TTGC hg38:Y:19040411-T-TTGC | ** | ||||||
hg19:Y:21368401-G-T hg38:Y:19206515-G-T | ** | ||||||
hg19:Y:21565967-A-T hg38:Y:19404081-A-T | ** | ||||||
hg19:Y:22211417-T-A hg38:Y:20049531-T-A | ** | ||||||
hg19:Y:22313766-C-G hg38:Y:20151880-C-G | DYZ19 | ** | |||||
hg19:Y:22423546-C-G hg38:Y:20261660-C-G | DYZ19 | ** | |||||
hg19:Y:22602140-C-A hg38:Y:20440254-C-A | ** | ||||||
hg19:Y:22713597-C-A hg38:Y:20551711-C-A | ** | ||||||
hg19:Y:22778980-G-T hg38:Y:20617094-G-T | ** | ||||||
hg19:Y:22816354-G-T hg38:Y:20654468-G-T | ** | ||||||
hg19:Y:22880849-T-C hg38:Y:20718963-T-C | ** | ||||||
hg19:Y:22991178-T-A hg38:Y:20829292-T-A | ** | ||||||
hg19:Y:23044517-C-A hg38:Y:20882631-C-A | ** | ||||||
hg19:Y:23091711-C-A hg38:Y:20929825-C-A | ** | ||||||
hg19:Y:23412170-A-C hg38:Y:21250284-A-C | ** | ||||||
hg19:Y:23569520-G-T hg38:Y:21407634-G-T | Y111916 | ** | |||||
hg19:Y:23779848-T-G hg38:Y:21617962-T-G | ** | ||||||
hg19:Y:24474948-T-G hg38:Y:22328801-T-G | ** | ||||||
hg19:Y:24884193-T-C hg38:Y:22738046-T-C | g1 | ** | |||||
hg19:Y:24884201-T-C hg38:Y:22738054-T-C | g1 | ** | |||||
hg19:Y:24884210-A-G hg38:Y:22738063-A-G | g1 | ** | |||||
hg19:Y:24884223-T-A hg38:Y:22738076-T-A | g1 | ** | |||||
hg19:Y:25964775-A-C hg38:Y:23818628-A-C | P1_Y1 | ** | |||||
hg19:Y:27861040-G-GTTTT hg38:Y:25714893-G-GTTTT | P1_Y2 | 17×T | ** | ||||
hg19:Y:28613072-G-A hg38:Y:26466925-G-A | ** | ||||||
hg19:Y:28782196-G-T hg38:Y:26636049-G-T | ** | ||||||
hg19:Y:28791267-G-T hg38:Y:26645120-G-T | ** | ||||||
hg19:Y:28791280-A-T hg38:Y:26645133-A-T | ** | ||||||
hg19:Y:28800844-C-A hg38:Y:26654697-C-A | Y60073 | ** | |||||
hg19:Y:28814992-T-C hg38:Y:26668845-T-C | ** | ||||||
hg19:Y:28815894-T-C hg38:Y:26669747-T-C | ** | ||||||
hg19:Y:28815916-G-T hg38:Y:26669769-G-T | ** | ||||||
hg38:Y:56826147-C-T | ** | ||||||
hg38:Y:56826153-C-T | ** | ||||||
hg38:Y:56840910-A-AG | ** | ||||||
hg38:Y:56840916-GGA-G | ** | ||||||
hg38:Y:56850409-AGG-A | ** | ||||||
hg38:Y:56858991-T-G | ** | ||||||
hg38:Y2:27431-T-C | ** | ||||||
hg19:Y:18994849-A-AGAAG hg38:Y:16882969-A-AGAAG | 6×GAAG | *** | |||||
hg19:Y:22433813-G-A hg38:Y:20271927-G-A | DYZ19 | *** | |||||
hg19:Y:2948624-GTA-G hg38:Y:3080583-GTA-G | *** | ||||||
hg19:Y:58979370-T-G hg38:Y:56833223-T-G | *** | ||||||
hg19:Y:17515584-TAA-T,TA hg38:Y:15403704-TAA-T,TA | 17×A | *** | |||||
hg38:Y:10807297-A-T | *** | ||||||
hg38:Y:10673867-C-A | *** | ||||||
hg38:Y:56829394-CCATTCGATTCCATTC-C,CCATTCGATTCCATTG | *** | ||||||
hg38:Y:10657316-A-C | *** | ||||||
hg19:Y:17633686-CAAA-C hg38:Y:15521806-CAAA-C | 17×A | *** | |||||
hg38:Y:10807279-C-A,G | *** | ||||||
hg38:Y:10935551-C-A | *** | ||||||
hg19:Y:6734680-CTTTTTT-C hg38:Y:6866639-CTTTTTT-C | 21×T | *** | |||||
hg19:Y:6910435-CT-C,CTT hg38:Y:7042394-CT-C,CTT | 16×T | *** | |||||
hg38:Y:10987791-T-C | *** | ||||||
hg38:Y:10790276-T-G | *** | ||||||
hg38:Y:10790296-T-A | *** | ||||||
hg19:Y:16927091-C-A hg38:Y:14815211-C-A | *** | ||||||
hg38:Y:10657274-C-A | *** | ||||||
hg38:Y:11014472-C-T | *** | ||||||
hg19:Y:15423474-CA-C,CAA hg38:Y:13311594-CA-C,CAA | 16×A | *** | |||||
hg19:Y:7464181-C-CAA hg38:Y:7596140-C-CAA | IR1_L | 15×A | *** | ||||
hg19:Y:5393332-C-A hg38:Y:5525291-C-A | *** | ||||||
hg38:Y:10935607-C-A | *** | ||||||
hg19:Y:17238267-T-A hg38:Y:15126387-T-A | *** | ||||||
hg19:Y:2960108-T-A hg38:Y:3092067-T-A | *** | ||||||
hg19:Y:2974933-ATT-A hg38:Y:3106892-ATT-A | 11×T | *** | |||||
hg19:Y:4502953-T-C hg38:Y:4634912-T-C | *** | ||||||
hg19:Y:5523457-G-A hg38:Y:5655416-G-A | *** | ||||||
hg19:Y:6693204-C-A hg38:Y:6825163-C-A | *** | ||||||
hg19:Y:6889103-C-A hg38:Y:7021062-C-A | *** | ||||||
hg19:Y:7241791-C-A hg38:Y:7373750-C-A | *** | ||||||
hg19:Y:7321468-A-C hg38:Y:7453427-A-C | *** | ||||||
hg19:Y:8822817-C-A hg38:Y:8954776-C-A | *** | ||||||
hg38:Y:11014454-T-A,C | *** | ||||||
hg19:Y:13678458-G-C hg38:Y:11522782-G-C | DYZ17 | *** | |||||
hg19:Y:13678459-G-A hg38:Y:11522783-G-A | DYZ17 | *** | |||||
hg19:Y:13678463-G-T hg38:Y:11522787-G-T | DYZ17 | *** | |||||
hg19:Y:14694469-C-A hg38:Y:12582535-C-A | *** | ||||||
hg19:Y:15011299-C-T hg38:Y:12899384-C-T | *** | ||||||
hg19:Y:15744288-C-A hg38:Y:13632408-C-A | *** | ||||||
hg19:Y:15865584-C-A hg38:Y:13753704-C-A | *** | ||||||
hg19:Y:15994971-C-A hg38:Y:13883091-C-A | *** | ||||||
hg19:Y:16278312-C-A hg38:Y:14166432-C-A | *** | ||||||
hg19:Y:16505309-C-A hg38:Y:14393429-C-A | FTB29037 | *** | |||||
hg19:Y:17238259-G-A hg38:Y:15126379-G-A | *** | ||||||
hg19:Y:17895174-A-AAT hg38:Y:15783294-A-AAT | *** | ||||||
hg19:Y:18008667-T-G hg38:Y:15896787-T-G | P7_Dst | *** | |||||
hg19:Y:18740677-C-A hg38:Y:16628797-C-A | *** | ||||||
hg19:Y:22633639-C-A hg38:Y:20471753-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Age Analysis Information (work in progress)
All | McDonald | YFull | |
Kit: 742597 | 9485541 | 7812903 | 7730620 |
Used in age calculations | 9485541 | 7812903 | 7730620 |
Counts of SNPs | 15 | 15 |
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