Tree Position

R-M269 > L23 > Z2103 > PF331

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
526066
13842702-G-T 11721996-G-T A*
28817826-G-T 26671679-G-T A*
6267718-G-A 6399677-G-A IR3_Dst A*
6144444-G-A 6276403-G-A IR3_Dst A*
19633869-C-G 17521989-C-G P5_Prx A*
22304886-A-T 20143000-A-T DYZ19 A*
13694977-T-C 11539301-T-C A*
8400900-C-T 8532859-C-T M12004 YY14×TA*
16119148-C-A 14007268-C-A P8_Prx A*
26219425-C-T 24073278-C-T P1_Y1 A*
13694970-T-G 11539294-T-G A*
26082841-C-A 23936694-C-A P1_Y1 A*
20041960-G-T 17930080-G-T BY212062 P5_Prx A*
15427135-A-T 13315255-A-T Y93774 YY+
14922975-T-C 12811040-T-C Y92547 YY+
15078359-G-A 12966449-G-A Y92991 YY+
5869714-G-A 6001673-G-A BY58922 +
7307244-GT-G 7439203-GT-G 11×T+
13654681-T-A 11499005-T-A BY87185 +
13691228-G-A 11535552-G-A BY88664 +
22755084-C-T 20593198-C-T Y109663 YY+
22679982-G-A 20518096-G-A Y109446 YY+
7619047-C-T 7751006-C-T Y84463 YY+
6492289-A-G 6624248-A-G BY60277 +
22489345-T-C 20327459-T-C BY201464 DYZ19 +
20839195-G-C 18677309-G-C Y105267 P4_Gap +
6965205-G-A 7097164-G-A M8200 YY+
21469889-C-T 19308003-C-T Y106572 YY+
21479220-A-G 19317334-A-G Y106606 YY+
6882892-G-A 7014851-G-A Y82782 YY+
17516309-C-A 15404429-C-A Y99397 YY+
22066323-G-T 19904437-G-T Y108281 YY+
7250612-T-C 7382571-T-C Y83719 YY+
22476080-A-T 20314194-A-T BY223512 DYZ19 +
7278080-A-G 7410039-A-G Y83780 YY+
9108277-C-G 9270668-C-G BY78160 Y+
22425961-T-A 20264075-T-A BY217952 DYZ19 +
16224187-A-G 14112307-A-G BY34128 Y95649 YY+
22474000-C-A 20312114-C-A BY223050 DYZ19 +
13695217-G-C 11539541-G-C BY88896 +
24509072-A-G 22362925-A-G Y113032 +
14197391-T-G 12076685-T-G Y90578 YY+
6918004-C-T 7049963-C-T Y82870 YY+
18992425-A-G 16880545-A-G Y103279 YY+
27842234-AGAAG-A 25696087-AGAAG-A P1_Y2 8×GAAG+
7274816-C-CATTT 7406775-C-CATTT 11×ATTT+
17906581-T-A 15794701-T-A Y100603 YY+
8468025-A-G 8599984-A-G Y86978 YY+
8392859-T-G 8524818-T-G BY72268 YY+
9734654-C-T 9897045-C-T BY80601 IR3_Prx +
2888678-A-G 3020637-A-G BY19855M365 YY+
8116855-C-A 8248814-C-A Y85873 YY+
4902725-C-A 5034684-C-A BY71936Z7102 Y12181 F9182 +
13868939-G-A 11748233-G-A FGC77771 +
7112204-T-C 7244163-T-C Y83382 YY+
7926406-G-C 8058365-G-C Y85369 YY+
2888677-C-T 3020636-C-T BY57112 YY+
19167793-C-A 17055913-C-A Y103878 Y+
22317584-T-A 20155698-T-A DYZ19 *
13470595-C-T 11314919-C-T *
15940617-A-G 13828737-A-G YY*
22281060-T-G 20119174-T-G DYZ19 *
22315793-G-C 20153907-G-C DYZ19 *
7053358-AAAAGAAAGAAAG-A 7185317-AAAAGAAAGAAAG-A 17×AAAG*
22257434-T-A 20095548-T-A DYZ19 *
20821939-AGTGTGT-A 18660053-AGTGTGT-A P4_Gap 16×GT*
28810665-C-T 26664518-C-T *
17793822-ATATC-A 15681942-ATATC-A 11×TATC*
8467821-T-TTGTG 8599780-T-TTGTG 11×TG*
19411914-AAAAG-A 17300034-AAAAG-A 14×AAAG*
10819535-C-G FT299806 **
10662426-C-A **
10652395-A-G **
10652394-C-T **
9542061-TG-T 9704452-TG-T IR3_Prx **
9427501-A-G 9589892-A-G **
10833229-T-C **
10837205-C-A **
10841754-T-A **
10652413-A-G **
10847112-C-A **
9414642-G-T 9577033-G-T **
10835774-C-A **
10818902-A-C **
9542080-A-G 9704471-A-G IR3_Prx **
10770678-A-T **
10752465-A-T **
10752476-C-T **
10648141-G-T **
10764663-G-A **
10764801-C-A **
10648132-T-A **
10764822-C-A **
10764892-C-A **
10798171-G-T **
10689168-C-T **
10847503-A-C **
10647701-G-A **
10684514-G-A **
10673416-C-A **
10645976-C-A **
10014407-G-A 10176798-G-A **
9966212-C-A 10128603-C-A **
9810996-A-T 9973387-A-T **
10806825-C-T **
30393-T-C **
10860065-C-A **
13899340-A-G 11778634-A-G **
11646722-T-A **
11674508-G-T **
11674931-C-A **
11674999-A-G **
11675235-T-G **
11675601-G-T **
11676568-A-T **
11676710-T-A **
13857788-CTGGAA-C 11737082-CTGGAA-C **
13895165-C-G 11774459-C-G **
13895770-C-A 11775064-C-A **
13936330-C-A 11815624-C-A **
13527803-A-C 11372127-A-C **
13940704-T-G 11819998-T-G **
14002668-ATG-A 11881962-ATG-A **
14021226-G-T 11900520-G-T **
14029153-T-C 11908447-T-C **
14053536-G-T 11932830-G-T **
14067204-T-A 11946498-T-A **
14088825-C-G 11968119-C-G **
14098011-C-A 11977305-C-A **
14107022-A-C 11986316-A-C **
14149443-T-A 12028737-T-A **
14159629-C-T 12038923-C-T **
13556242-T-G 11400566-T-G **
13527716-T-C 11372040-T-C FTB5689 **
10870700-C-T **
11003617-C-A **
10875668-T-C **
10877776-T-TCCACG **
10877782-C-CCATTT **
10877827-C-T **
10885840-C-A **
10886363-T-A **
10925957-A-C **
10946822-C-A **
10963878-T-G **
10985081-C-A **
11002259-C-A **
11003646-T-C **
13523637-TA-T 11367961-TA-T **
11005467-C-G **
11037617-C-T FGC78003 **
11037682-C-A **
13223278-A-G 11067602-A-G **
13223287-A-G 11067611-A-G **
13226735-G-T 11071059-G-T **
13239807-G-T 11084131-G-T **
13264783-T-A 11109107-T-A **
13410595-T-C 11254919-T-C **
13461808-G-T 11306132-G-T **
13483203-A-C 11327527-A-C **
13515133-C-A 11359457-C-A **
9403167-TG-T 9565558-TG-T **
7633203-G-T 7765162-G-T **
9076744-T-G 9239135-T-G **
5729322-C-A 5861281-C-A **
5243510-T-C 5375469-T-C **
5249768-A-C 5381727-A-C **
5266898-A-T 5398857-A-T **
5274375-A-G 5406334-A-G **
5274377-T-G 5406336-T-G **
5274384-C-G 5406343-C-G **
5320018-T-A 5451977-T-A **
5527784-C-A 5659743-C-A **
5587197-A-T 5719156-A-T **
5710530-A-C 5842489-A-C **
5755884-C-A 5887843-C-A **
5135996-A-G 5267955-A-G **
5791836-TAGTTTA-T 5923795-TAGTTTA-T **
5974743-C-A 6106702-C-A FT226061 **
5999421-G-T 6131380-G-T **
5999426-G-T 6131385-G-T **
5999435-A-G 6131394-A-G **
6055367-A-G 6187326-A-G **
6085376-C-A 6217335-C-A **
6147469-A-C 6279428-A-C IR3_Dst **
6295441-T-A 6427400-T-A IR3_Dst **
6295537-T-G 6427496-T-G IR3_Dst **
5231233-C-A 5363192-C-A **
5107896-G-C 5239855-G-C **
6642734-C-T 6774693-C-T **
4240373-A-G 4372332-A-G **
3834962-C-A 3966921-C-A **
3847364-A-G 3979323-A-G **
3940137-C-A 4072096-C-A **
3961750-G-A 4093709-G-A **
4063881-C-A 4195840-C-A **
4079640-A-G 4211599-A-G **
4087926-G-T 4219885-G-T **
4133870-A-C 4265829-A-C **
4176676-C-A 4308635-C-A **
4240372-C-G 4372331-C-G **
4337275-A-G 4469234-A-G **
5050092-G-T 5182051-G-T **
4576455-C-T 4708414-C-T **
4600193-G-T 4732152-G-T **
4741990-A-G 4873949-A-G **
4757742-C-A 4889701-C-A **
4795649-G-T 4927608-G-T **
4841428-G-T 4973387-G-T **
4918909-C-G 5050868-C-G **
4931153-A-T 5063112-A-T **
4960282-G-T 5092241-G-T **
4969333-A-T 5101292-A-T **
6424966-C-A 6556925-C-A **
6647034-G-T 6778993-G-T **
9108377-G-T **
8073398-T-C 8205357-T-C **
7384866-C-A 7516825-C-A S10211 **
7409456-C-A 7541415-C-A **
7428322-C-A 7560281-C-A **
7572909-A-T 7704868-A-T **
7708847-A-C 7840806-A-C **
7717906-C-A 7849865-C-A **
7755261-C-G 7887220-C-G **
7755267-G-T 7887226-G-T **
7784524-C-A 7916483-C-A **
7970364-G-T 8102323-G-T **
8075759-C-A 8207718-C-A **
7375050-T-A 7507009-T-A **
8075935-GCT-G 8207894-GCT-G **
8119258-G-A 8251217-G-A **
8167917-G-A 8299876-G-A **
8178905-G-T 8310864-G-T **
8290758-C-A 8422717-C-A **
8343926-C-A 8475885-C-A **
8376366-C-G 8508325-C-G **
8761535-T-C 8893494-T-C **
8822359-A-C 8954318-A-C **
8850040-G-T 8981999-G-T **
7381881-G-T 7513840-G-T **
7363248-C-A 7495207-C-A **
6647043-C-A 6779002-C-A **
7058222-A-T 7190181-A-T **
6666132-T-G 6798091-T-G **
6666141-T-G 6798100-T-G **
6712654-G-T 6844613-G-T **
6767710-G-A 6899669-G-A **
6784568-C-A 6916527-C-A **
6791892-C-G 6923851-C-G **
6856623-C-A 6988582-C-A BZ1130 **
6858675-C-A 6990634-C-A FT195441 **
7038379-C-A 7170338-C-A **
7043099-C-G 7175058-C-G **
7061188-C-T 7193147-C-T **
7360531-G-A 7492490-G-A **
7165486-T-C 7297445-T-C **
7176943-C-A 7308902-C-A **
7185599-T-G 7317558-T-G **
7208444-A-G 7340403-A-G **
7221297-T-C 7353256-T-C **
7222953-C-A 7354912-C-A **
7253850-G-T 7385809-G-T **
7309996-A-C 7441955-A-C **
7322609-T-C 7454568-T-C **
7348468-C-A 7480427-C-A **
14174715-G-T 12054009-G-T **
14700166-G-A 12588232-G-A FGC35798 **
14241282-C-A 12120576-C-A **
21427799-C-G 19265913-C-G **
20771661-G-T 18609775-G-T P4_Prx **
20865505-A-G 18703619-A-G P4_Dst **
20989152-CACATAT-C 18827266-CACATAT-C P4_Dst **
21113133-CA-C 18951247-CA-C **
21187867-CT-C 19025981-CT-C **
21262681-C-T 19100795-C-T FT374229 **
21262688-A-AC 19100802-A-AC **
21262821-G-T 19100935-G-T **
21371560-C-A 19209674-C-A **
21427094-G-A 19265208-G-A **
21435364-T-C 19273478-T-C **
20439104-AAAAAAAACT-A 18277218-AAAAAAAACT-A P5_Dst **
21464535-TCAAAAA-T 19302649-TCAAAAA-T **
21658510-C-A 19496624-C-A **
21791407-T-C 19629521-T-C **
21836698-G-A 19674812-G-A **
22078073-A-T 19916187-A-T **
22078369-G-T 19916483-G-T **
22114805-G-T 19952919-G-T **
22124007-C-A 19962121-C-A **
22124015-A-C 19962129-A-C **
22124021-G-C 19962135-G-C **
22124370-T-C 19962484-T-C **
20649921-C-T 18488035-C-T P4_Prx **
20352226-G-T 18190340-G-T P5_Dst **
22303619-G-A 20141733-G-A DYZ19 **
19280758-C-A 17168878-C-A **
18531140-T-A 16419260-T-A P6_Dst **
18554247-A-T 16442367-A-T Y102062 **
18566165-C-A 16454285-C-A **
18812091-G-A 16700211-G-A **
18859136-C-A 16747256-C-A **
18993382-C-A 16881502-C-A **
19065122-G-T 16953242-G-T **
19121818-C-A 17009938-C-A **
19216250-C-G 17104370-C-G FT220498 **
19250283-A-G 17138403-A-G **
19280823-C-A 17168943-C-A **
20334785-G-T 18172899-G-T P5_Dst **
19524523-C-A 17412643-C-A FT202231 **
19547715-G-T 17435835-G-T **
19547721-G-T 17435841-G-T **
19553022-T-G 17441142-T-G **
19553219-C-A 17441339-C-A **
19609587-C-A 17497707-C-A P5_Prx **
19792995-AGT-A 17681115-AGT-A P5_Prx **
19795161-C-A 17683281-C-A P5_Prx **
19795162-AT-A 17683282-AT-A P5_Prx **
20019201-TTTTT-C 17907321-TTTTT-C P5_Prx **
20021703-C-A 17909823-C-A P5_Prx **
22204409-G-T 20042523-G-T Y108696 **
22304985-T-A 20143099-T-A DYZ19 **
18438243-G-A 16326363-G-A P6_Dst **
28609060-C-A 26462913-C-A **
26066386-T-TGG 23920239-T-TGG P1_Y1 **
26162188-C-A 24016041-C-A P1_Y1 **
26310661-GA-G 24164514-GA-G P1_Y1 **
27583197-G-A 25437050-G-A P1_Y2 **
27699835-T-C 25553688-T-C P1_Y2 **
27699840-GTA-G 25553693-GTA-G P1_Y2 **
27939501-G-A 25793354-G-A P1_Y2 **
28561730-T-A 26415583-T-A **
28598341-T-G 26452194-T-G **
28598348-G-T 26452201-G-T **
28612138-G-T 26465991-G-T **
25918858-T-TA 23772711-T-TA P1_Y1 **
28621854-T-C 26475707-T-C **
28712151-C-A 26566004-C-A **
28724252-C-A 26578105-C-A **
28728444-T-A 26582297-T-A **
28782261-T-G 26636114-T-G **
28792461-T-G 26646314-T-G **
28797803-G-T 26651656-G-T **
28797805-G-T 26651658-G-T **
28814997-T-C 26668850-T-C **
56844297-T-C **
16563-A-G **
26066378-GT-G 23920231-GT-G P1_Y1 **
24614151-T-C 22468004-T-C P3_t2 **
22325404-G-T 20163518-G-T DYZ19 **
22997786-T-C 20835900-T-C **
22325410-T-G 20163524-T-G DYZ19 **
22587014-C-A 20425128-C-A **
22587828-C-A 20425942-C-A **
22836581-C-A 20674695-C-A M10595 **
22873308-A-G 20711422-A-G **
22873378-G-T 20711492-G-T **
22873504-C-A 20711618-C-A **
22949870-G-A 20787984-G-A **
22956229-T-C 20794343-T-C **
22979233-G-A 20817347-G-A **
22979276-A-T 20817390-A-T **
23017796-C-A 20855910-C-A **
24466099-T-G 22319952-T-G **
23058652-T-G 20896766-T-G **
23062804-G-T 20900918-G-T **
23231522-A-G 21069636-A-G **
23364323-G-T 21202437-G-T **
23371421-A-C 21209535-A-C **
23371430-T-C 21209544-T-C **
23373523-C-G 21211637-C-G **
23401497-G-T 21239611-G-T **
23440277-T-C 21278391-T-C **
24001369-T-G 21855222-T-G **
24373188-T-A 22227041-T-A **
18531137-T-A 16419257-T-A P6_Dst **
18438234-AAGAT-A 16326354-AAGAT-A P6_Dst **
14247556-G-T 12126850-G-T **
15115699-A-C 13003786-A-C **
14717588-C-A 12605656-C-A **
14761029-C-A 12649098-C-A **
14769274-T-G 12657343-T-G **
14769318-T-A 12657387-T-A **
14798523-T-G 12686594-T-G **
14802668-T-A 12690739-T-A **
14985061-C-A 12873129-C-A **
15011729-C-A 12899817-C-A **
15103627-T-C 12991715-T-C Y93031 **
15115680-C-G 13003767-C-G **
15115700-G-A 13003787-G-A **
14700242-G-A 12588308-G-A **
15115702-A-C 13003789-A-C **
15315454-T-A 13203559-T-A **
15324124-G-T 13212242-G-T **
15355038-C-A 13243157-C-A **
15451504-C-A 13339624-C-A **
15676370-G-A 13564490-G-A **
15676419-G-A 13564539-G-A **
15677769-T-G 13565889-T-G **
15684188-A-C 13572308-A-C **
15696841-C-A 13584961-C-A **
15727095-C-T 13615215-C-T **
14717558-C-A 12605626-C-A **
14700238-A-G 12588304-A-G **
15749342-G-T 13637462-G-T **
14524714-G-T 12412915-G-T **
14312182-C-T 12191476-C-T **
14351149-C-A 12230444-C-A **
14356479-G-T 12235774-G-T **
14379087-T-G 12258383-T-G **
14396534-C-A 12275830-C-A **
14441880-C-A 12321153-C-A **
14442005-T-A 12321278-T-A **
14462380-C-G 12341653-C-G Y91497 **
14499487-C-G 12387692-C-G **
14515055-C-A 12403260-C-A **
14516817-C-A 12405018-C-A **
14532011-G-T 12420212-G-T **
14700176-CA-G 12588242-CA-G **
14574591-T-C 12462791-T-C **
14593065-C-A 12481265-C-A **
14598494-C-A 12486694-C-A **
14622140-G-T 12510338-G-T **
14657545-C-A 12545610-C-A **
14658320-G-T 12546385-G-T **
14658326-T-G 12546391-T-G **
14660364-C-A 12548429-C-A **
14700165-T-C 12588231-T-C **
20649909-TTTTC-T 18488023-TTTTC-T P4_Prx 6×TTTC**
14700171-G-T 12588237-G-T **
15743734-C-G 13631854-C-G **
15776279-G-T 13664399-G-T **
18438232-A-G 16326352-A-G P6_Dst **
17870798-G-C 15758918-G-C **
17561926-C-T 15450046-C-T **
17629819-T-G 15517939-T-G **
17638287-C-A 15526407-C-A **
17668265-G-T 15556385-G-T **
17717183-C-A 15605303-C-A **
17718314-G-C 15606434-G-C **
17797080-G-T 15685200-G-T **
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16432904-C-A 14321024-C-A **
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7270317-T-C 7402276-T-C **
14316361-C-A 12195655-C-A **
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15712441-C-A 13600561-C-A **
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4527437-C-A 4659396-C-A **
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14911819-C-A 12799886-C-A **
2905975-C-A 3037934-C-A **
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3649146-C-A 3781105-C-A **
10752432-T-TCCAAC **
10769847-G-T **
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11675395-C-A **
14079564-C-A 11958858-C-A **
15183791-G-T 13071877-G-T **
18780445-C-A 16668565-C-A **
11005507-C-A **
10752460-A-G **
21708306-C-A 19546420-C-A **
24884168-C-T 22738021-C-T g1 20×T***
21912084-C-T 19750198-C-T ***
15744559-C-A 13632679-C-A ***
6144765-C-A 6276724-C-A IR3_Dst ***
27810281-G-GA 25664134-G-GA P1_Y2 ***
13489735-G-A 11334059-G-A ***
17159005-C-T 15047125-C-T ***
14914663-C-T 12802730-C-T 8×T***
13939580-T-C 11818874-T-C FTB33003 ***
56848638-G-T ***
58981116-T-TTCCATTC 56834969-T-TTCCATTC ***
8425692-A-T 8557651-A-T ***
9843200-C-A 10005591-C-A ***
56829805-C-A ***
21556954-A-T 19395068-A-T ***
10794308-C-T ***
5170393-C-T 5302352-C-T ***
25954080-TTTTC-T,TTTTCTTTCTTTC 23807933-TTTTC-T,TTTTCTTTCTTTC P1_Y1 16×TTTC***
10982326-C-T ***
22200376-T-A 20038490-T-A ***
18984946-C-T 16873066-C-T ***
17887553-A-AT 15775673-A-AT 10×T***
14392753-G-T 12272049-G-T ***
18653683-G-A 16541803-G-A ***
2960095-G-A 3092054-G-A 9×A***
10860260-C-A ***
7269659-G-T 7401618-G-T FT178949 ***
10794234-C-T ***
11643708-G-A ***
24600442-CTCTTTCTT-C,CTCTT 22454295-CTCTTTCTT-C,CTCTT P3_t2 18×TCTT***
15967527-G-T 13855647-G-T ***
16703587-G-T 14591707-G-T ***
13453226-A-ATCCAT 11297550-A-ATCCAT 10×TCCAT***
21558711-C-T 19396825-C-T ***
10019575-CT-C 10181966-CT-C 10×T***
16868631-GTA-G 14756751-GTA-G ***
6010279-TGG-T 6142238-TGG-T ***
18635319-CAT-C 16523439-CAT-C ***
27127749-T-C 24981602-T-C P1_g3 ***
17387294-GTATA-G 15275414-GTATA-G 12×TA***
15669964-C-A 13558084-C-A 18×A***
15604335-C-A 13492455-C-A ***
10748028-T-G ***
10652385-T-G ***
16003872-C-A 13891992-C-A ***
14686003-TGGGTAG-T 12574069-TGGGTAG-T ***
21469225-C-T 19307339-C-T ***
18738135-G-T 16626255-G-T ***
13885882-G-T 11765176-G-T ***
13488754-G-C 11333078-G-C ***
7534509-A-T 7666468-A-T ***
10652390-T-G ***
10999949-C-G ***
11643804-G-A ***
18951869-C-A 16839989-C-A ***
10693374-C-A ***
17946922-T-TG 15835042-T-TG ***
15669934-T-G 13558054-T-G ***
10658714-G-T ***
13450516-CTCCACTTCACTCCAC-C,CTCCAATCCATCCCAT 11294840-CTCCACTTCACTCCAC-C,CTCCAATCCATCCCAT ***
19263513-C-A 17151633-C-A ***
21446243-G-T 19284357-G-T ***
15816651-G-A 13704771-G-A ***
10780153-C-CTCCATTCCAT ***
14446517-C-T 12325790-C-T BY47141 ***
5186735-C-A 5318694-C-A ***
10826908-T-A,C ***
13677063-G-T 11521387-G-T ***
13467817-TG-A 11312141-TG-A ***
11669336-C-A ***
13503505-A-ATG 11347829-A-ATG ***
13488773-C-A,T 11333097-C-A,T ***
13477835-C-A 11322159-C-A ***
18398224-C-T 16286344-C-T P6_Gap ***
13446809-TC-T 11291133-TC-T ***
21469242-A-T 19307356-A-T ***
18738134-A-T 16626254-A-T ***
7782898-C-A 7914857-C-A ***
10987835-A-G ***
14286828-C-T 12166122-C-T ***
10895863-T-C ***
23391496-ATTTT-A 21229610-ATTTT-A 20×T***
14191088-CTT-C 12070382-CTT-C 11×T***
14252405-T-C 12131699-T-C ***
9079411-G-T 9241802-G-T ***
22951102-CTT-C,CT 20789216-CTT-C,CT 13×T***
17012786-C-CAT,CATAT 14900906-C-CAT,CATAT 12×AT***
8832707-A-T 8964666-A-T ***
10793177-T-C ***
19463659-A-G 17351779-A-G ***
56830999-C-CTCCAC,CTCCAT ***
10989076-G-A ***
2707996-C-A 2839955-C-A ***
3272883-C-A 3404842-C-A ***
10895878-T-C ***
21495375-C-A 19333489-C-A ***
17387333-A-T 15275453-A-T ***
13643613-C-A 11487937-C-A ***
10793245-C-CTCTCCACTCT ***
18218864-C-A 16106984-C-A ***
10793227-C-T ***
10793224-G-C ***
10793217-C-T ***
10793212-C-T ***
10793208-T-TC ***
10793207-C-A ***
10793203-TG-T ***
10793202-A-T ***
10793194-C-T ***
17414927-G-A 15303047-G-A ***
10983957-T-C ***
7228426-G-T 7360385-G-T ***
17503958-C-A 15392078-C-A ***
13466013-A-C 11310337-A-C ***
13466003-G-C 11310327-G-C ***
15904146-T-A 13792266-T-A ***
15252799-G-T 13140885-G-T ***
56835873-C-T ***
6979544-CT-C 7111503-CT-C 9×T***
18628000-C-A 16516120-C-A ***
17503920-T-C 15392040-T-C ***
10657362-C-T ***
14391874-TAAAA-T 12271170-TAAAA-T 15×A***
10934812-T-A ***
10770573-C-A ***
17749418-C-A 15637538-C-A ***
20603882-A-G 18441996-A-G P5_Dst ***
10989119-C-T ***
21104437-T-A 18942551-T-A 22×A***
2810394-C-G 2942353-C-G ***
22147816-TTTCTT-T,TTTCTC 19985930-TTTCTT-T,TTTCTC ***
11014491-C-T ***
25885794-G-GGAAAGAAA 23739647-G-GGAAAGAAA P1_Y1 15×GAAA***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 526066968402378676547759233
Used in age calculations968402378676547759233
Counts of SNPs2929
Variant counts last updated 2022-07-30 03:29:56.



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