Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
742239
28817730-A-G 26671583-A-G A*
20770364-T-C 18608478-T-C P4_Prx A*
28817401-G-A 26671254-G-A A*
6336372-C-T 6468331-C-T BY59638 IR3_Dst A*
22232325-T-A 20070439-T-A DYZ19 A*
26201334-C-T 24055187-C-T P1_Y1 A*
6169820-C-G 6301779-C-G IR3_Dst A*
6169014-C-T 6300973-C-T IR3_Dst A*
22440330-A-T 20278444-A-T DYZ19 +
8304632-C-T 8436591-C-T Y136622 YY+
21519919-G-A 19358033-G-A BY133571 YY+
17821710-T-C 15709830-T-C Y136617 YY+
14037070-C-T 11916364-C-T BY27279 YY+
7229621-T-C 7361580-T-C Y136635 YY+
19287983-C-T 17176103-C-T BY127986 YY+
14865420-C-T 12753486-C-T BY98092 YY+
8853950-AC-A 8985909-AC-A +
18076689-G-A 15964809-G-A Y136627 YY+
6818306-AAAC-A 6950265-AAAC-A +
18388851-C-G 16276971-C-G Y136619 P6_Gap +
15621989-A-G 13510109-A-G BY102956 YY+
8509834-G-C 8641793-G-C Y136640 YY+
22699232-G-C 20537346-G-C Y136639 YY+
6953202-TACACAC-T 7085161-TACACAC-T 17×AC+
9901080-C-T 10063471-C-T FGC39661 Y+
25944544-T-C 23798397-T-C P1_Y1 +
24464475-A-C 22318328-A-C Y136630 Y+
16019411-T-C 13907531-T-C Y136625 YY+
23834401-T-C 21672515-T-C BY148179 Y+
15622004-G-A 13510124-G-A BY102957 YY+
2806854-G-A 2938813-G-A Y136621 YY+
6735651-A-G 6867610-A-G Y136632 YY+
23391816-T-C 21229930-T-C BY145002 YY+
27918267-A-AAGTTAAATG 25772120-A-AAGTTAAATG P1_Y2 *
22345206-A-T 20183320-A-T DYZ19 *
15527185-C-A 13415305-C-A **
15770145-T-G 13658265-T-G **
15664030-C-T 13552150-C-T **
14587873-C-A 12476073-C-A **
16058021-C-A 13946141-C-A **
15566714-G-T 13454834-G-T **
16054307-G-T 13942427-G-T **
15738674-G-T 13626794-G-T **
16042715-C-A 13930835-C-A **
14825194-C-A 12713261-C-A **
15545154-T-A 13433274-T-A **
14885448-T-C 12773514-T-C **
15514762-A-G 13402882-A-G **
14900680-G-T 12788747-G-T **
14904421-T-A 12792488-T-A **
14916890-C-A 12804957-C-A 15×A**
15263484-C-T 13151574-C-T **
15738716-G-T 13626836-G-T **
15755272-A-G 13643392-A-G **
14521862-C-A 12410063-C-A **
15325036-C-A 13213154-C-A **
15365864-A-C 13253984-A-C **
15446620-G-T 13334740-G-T **
15478711-C-A 13366831-C-A **
15323487-C-A 13211605-C-A **
13845308-T-TGAATG 11724602-T-TGAATG 5×GAATG**
14509961-C-T 12398166-C-T **
10806345-C-T **
10921094-A-T **
10911962-TGG-T **
10887978-A-AATGAG **
10887513-A-C **
22555369-G-T 20393483-G-T FGC33371FGC33403 A2942 A1426 9×T**
10826109-C-T **
10801722-C-A **
10926707-C-CGCGTT **
10801714-T-TTCAAG **
10801671-C-CCTCTA **
10801660-T-A **
10798578-C-A **
10756904-C-A **
10692857-C-T **
10682561-C-CCTTTGAAATT **
10926702-C-CCCCTG **
10930498-G-T **
14325051-C-A 12204345-C-A **
16241663-A-C 14129783-A-C **
14310403-C-A 12189697-C-A **
14279132-C-T 12158426-C-T **
14236753-G-A 12116047-G-A **
14184392-C-A 12063686-C-A **
14158933-G-T 12038227-G-T **
14071354-C-CTTT 11950648-C-CTTT 25×T**
14010820-G-T 11890114-G-T **
13838763-A-G 11718057-A-G **
10999874-C-CCCTGTACTCGCGTTG **
11653537-G-T **
11653530-G-T **
13566017-A-G 11410341-A-G **
13487820-T-A 11332144-T-A **
13479693-G-T 11324017-G-T **
13297906-T-G 11142230-T-G **
13200705-G-T 11045029-G-T **
16179821-A-C 14067941-A-C **
17037435-C-A 14925555-C-A **
16269424-C-A 14157544-C-A **
19646397-G-T 17534517-G-T P5_Prx **
21394698-C-T 19232812-C-T **
21189454-C-A 19027568-C-A **
21172668-A-C 19010782-A-C **
21128359-G-A 18966473-G-A **
20200589-T-TA 18038703-T-TA P5_Dst **
19867315-T-A 17755435-T-A P5_Prx **
19867305-T-A 17755425-T-A P5_Prx **
19509410-C-A 17397530-C-A **
21833915-C-A 19672029-C-A **
19368492-C-A 17256612-C-A **
19298210-G-T 17186330-G-T **
19259572-C-A 17147692-C-A **
19251298-C-A 17139418-C-A **
19088651-C-A 16976771-C-A **
18900153-C-A 16788273-C-A **
18820362-T-A 16708482-T-A **
21455891-C-A 19294005-C-A **
22073871-C-A 19911985-C-A **
18782003-C-A 16670123-C-A **
23483383-C-T 21321497-C-T **
28614935-C-G 26468788-C-G **
28596930-A-T 26450783-A-T **
24480848-A-G 22334701-A-G Y136620 **
24003251-G-C 21857104-G-C **
23842648-G-T 21680762-G-T **
23813958-C-A 21652072-C-A **
23789338-C-TA 21627452-C-TA **
23368919-C-A 21207033-C-A **
22125092-C-A 19963206-C-A **
22993180-C-A 20831294-C-A **
22912709-C-A 20750823-C-A **
22712893-C-A 20551007-C-A **
22536961-G-T 20375075-G-T **
22536905-T-C 20375019-T-C **
22521208-A-G 20359322-A-G **
22437290-A-G 20275404-A-G BY13756 DYZ19 **
22185880-T-A 20023994-T-A **
18794337-G-A 16682457-G-A **
18766592-C-A 16654712-C-A **
16280901-T-C 14169021-T-C **
17042653-C-A 14930773-C-A **
17461346-C-A 15349466-C-A **
17406806-C-A 15294926-C-A **
17380122-A-G 15268242-A-G **
17177426-C-A 15065546-C-A **
17159816-G-T 15047936-G-T **
17134642-C-A 15022762-C-A **
17111208-C-A 14999328-C-A **
10676825-C-A **
17693633-T-G 15581753-T-G **
16912479-C-A 14800599-C-A **
16783427-A-T 14671547-A-T **
16734886-G-A 14623006-G-A **
16688434-T-A 14576554-T-A **
16636997-G-A 14525117-G-A **
16625710-C-A 14513830-C-A **
16515879-C-A 14403999-C-A **
17676494-C-A 15564614-C-A **
17693667-A-C 15581787-A-C **
18709259-C-A 16597379-C-A **
18137306-C-A 16025426-C-A **
18653531-C-A 16541651-C-A **
18643482-C-T 16531602-C-T **
18615702-A-G 16503822-A-G **
18614494-T-C 16502614-T-C **
18586702-T-A 16474822-T-A **
18354240-A-T 16242360-A-T P6_Prx **
18151700-C-A 16039820-C-A **
18071414-C-A 15959534-C-A **
17693673-A-C 15581793-A-C **
18052824-C-A 15940944-C-A **
17981867-A-T 15869987-A-T **
17961156-A-T 15849276-A-T **
17961150-T-G 15849270-T-G **
17961149-A-G 15849269-A-G **
17961147-T-C 15849267-T-C **
17951633-C-A 15839753-C-A **
17937252-C-CA 15825372-C-CA 9×A**
10682511-C-CCGTCG **
10880636-T-C **
10656007-T-C **
21499860-GT-G 19337974-GT-G 9×T**
19537284-C-A 17425404-C-A **
14254978-C-A 12134272-C-A **
13476330-A-C 11320654-A-C **
13468194-T-C 11312518-T-C **
5368142-G-T 5500101-G-T **
27810273-AAAGGAAGGAAGG-A 25664126-AAAGGAAGGAAGG-A P1_Y2 16×AAGG**
14262371-C-CT 12141665-C-CT 8×T**
10746967-C-CAGGTT **
13476318-GC-G 11320642-GC-G **
10745336-G-A **
10071455-G-T 10233846-G-T **
10071450-A-G 10233841-A-G **
10071422-A-C 10233813-A-C **
13868655-C-A 11747949-C-A **
23310495-C-A 21148609-C-A **
15941501-G-A 13829621-G-A **
7645316-C-A 7777275-C-A **
3833443-G-T 3965402-G-T **
18955620-C-A 16843740-C-A **
16019321-TC-T 13907441-TC-T **
7238313-G-T 7370272-G-T **
16450551-C-A 14338671-C-A **
24247414-CA-C 22101267-CA-C P3_b1 **
18194082-C-A 16082202-C-A **
3602768-C-A 3734727-C-A **
16264574-C-A 14152694-C-A **
15280107-C-A 13168206-C-A **
15364056-TCTC-T 13252176-TCTC-T **
14509913-C-A 12398118-C-A **
10657380-C-A **
5313538-C-A 5445497-C-A **
14379096-C-A 12258392-C-A **
11653523-G-T **
14882241-C-A 12770309-C-A **
10648090-TC-T **
22114929-TA-T 19953043-TA-T 8×A**
18811033-C-A 16699153-C-A **
17216026-C-A 15104146-C-A **
9142699-C-A 9305090-C-A **
18035665-CT-C 15923785-CT-C 30×T**
8649873-C-A 8781832-C-A **
10747022-C-CTGTT **
10747044-A-C **
10747023-C-CAGGTTA **
13468174-A-G 11312498-A-G **
58848125-C-G 56742746-G-C **
22660111-A-AT 20498225-A-AT 10×T**
22893365-CTTTCT-C 20731479-CTTTCT-C **
17440867-C-A 15328987-C-A **
21534891-C-A 19373005-C-A **
19506079-ATG-A 17394199-ATG-A **
18679924-GCAAAAA-G 16568044-GCAAAAA-G **
2686422-A-T 2818381-A-T CTS45 M2130 **
22177486-G-T 20015600-G-T M2276 Z4968 **
21915659-T-C 19753773-T-C Z4959 **
9451245-T-TTTA 9613636-T-TTTA 9×TTA**
7207445-C-A 7339404-C-A **
19600450-TGG-T 17488570-TGG-T P5_Prx **
17675521-T-A 15563641-T-A **
28657377-C-A 26511230-C-A Y113254 **
10796135-T-G **
10796106-C-A **
10754954-T-G **
23773602-G-T 21611716-G-T **
17527282-C-A 15415402-C-A **
3593081-C-A 3725040-C-A **
28700357-C-A 26554210-C-A **
7101855-C-A 7233814-C-A **
10796152-C-T **
10682548-A-G **
4088557-C-A 4220516-C-A **
14711914-C-A 12599981-C-A **
18127846-C-A 16015966-C-A **
10801711-C-A **
10801667-C-T **
10804780-TATTCCATTCC-T **
18238990-C-A 16127110-C-A **
16409138-C-A 14297258-C-A **
16938258-C-A 14826378-C-A **
10667007-T-A **
8155240-A-G 8287199-A-G **
8654110-A-G 8786069-A-G **
4517734-G-T 4649693-G-T **
4530677-G-T 4662636-G-T **
5243446-G-A 5375405-G-A **
8622848-C-T 8754807-C-T Y136624 **
5336767-A-T 5468726-A-T **
5449587-GCCAA-G 5581546-GCCAA-G **
5869676-A-C 6001635-A-C **
5951642-G-T 6083601-G-T **
6002950-C-A 6134909-C-A **
8106935-C-A 8238894-C-A **
8913464-G-A 9045423-G-A **
6513563-C-A 6645522-C-A **
7776511-G-T 7908470-G-T **
6621322-C-T 6753281-C-T Z31897 **
8016919-A-T 8148878-A-T **
6762907-C-A 6894866-C-A **
6828645-G-T 6960604-G-T **
6925846-C-A 7057805-C-A **
7717299-C-A 7849258-C-A **
6972665-T-C 7104624-T-C **
7641125-C-A 7773084-C-A **
7151121-C-A 7283080-C-A **
8677066-A-C 8809025-A-C **
5412252-C-A 5544211-C-A **
4320930-C-A 4452889-C-A **
4075973-G-T 4207932-G-T **
9982695-G-C 10145086-G-C **
16450574-C-A 14338694-C-A **
14002592-C-A 11881886-C-A **
9942533-C-A 10104924-C-A **
2873917-C-A 3005876-C-A **
9840025-G-T 10002416-G-T **
2892694-C-A 3024653-C-A **
9770513-G-GAA 9932904-G-GAA 9×A**
3691459-G-T 3823418-G-T **
9645753-C-A 9808144-C-A IR3_Prx **
3722683-G-C 3854642-G-C **
7192019-C-A 7323978-C-A **
9060033-G-C 9222424-G-C **
9456073-A-G 9618464-A-G **
4320911-C-A 4452870-C-A **
4284547-G-T 4416506-G-T **
18108523-C-A 15996643-C-A ***
21596099-C-A 19434213-C-A ***
9852560-T-C 10014951-T-C ***
9061923-TA-T 9224314-TA-T 9×A***
21541889-C-A 19380003-C-A ***
10657386-A-G ***
23128166-C-A 20966280-C-A ***
13453600-T-G 11297924-T-G F6659 ***
10657385-C-T ***
7702874-C-A 7834833-C-A ***
13588173-C-T 11432497-C-T ***
7679081-TA-T 7811040-TA-T ***
28755222-C-A 26609075-C-A ***
28780429-C-A 26634282-C-A ***
21775317-G-T 19613431-G-T ***
21995998-AT-A 19834112-AT-A ***
21899296-C-A 19737410-C-A ***
7972522-C-A 8104481-C-A ***
13810793-C-T 11690087-C-T ***
8214371-C-G 8346330-C-G ***
9136819-C-A 9299210-C-A ***
9090769-T-C 9253160-T-C ***
22871067-C-A 20709181-C-A ***
7999298-C-A 8131257-C-A ***
7899348-C-T 8031307-C-T ***
22649198-C-T 20487312-C-T ***
9057110-T-C ***
22229284-C-T 20067398-C-T DYZ19 ***
16940219-G-GTA 14828339-G-GTA ***
7870546-GA-G 8002505-GA-G 10×A***
13478213-C-A 11322537-C-A A17121 ***
28784453-ATGGAG-A 26638306-ATGGAG-A ***
15325123-C-CTT 13213241-C-CTT 11×T***
19229318-G-A 17117438-G-A ***
7531879-C-A 7663838-C-A ***
13468274-C-T 11312598-C-T ***
4357320-C-A 4489279-C-A ***
15396753-C-A 13284873-C-A ***
15404112-C-A 13292232-C-A ***
14585851-G-T 12474051-G-T ***
15425222-G-T 13313342-G-T ***
17559653-C-CT 15447773-C-CT 8×T***
10657360-C-T ***
6356367-C-A 6488326-C-A ***
4215727-C-T 4347686-C-T ***
4138568-G-T 4270527-G-T ***
18984861-GA-G 16872981-GA-G 10×A***
2810366-ATTTTTTT-A 2942325-ATTTTTTT-A 23×T***
16955736-C-A 14843856-C-A ***
4581665-G-GT 4713624-G-GT 8×T***
16711257-C-A 14599377-C-A ***
2825206-GT-G,GTT 2957165-GT-G,GTT 12×T***
58980470-C-T 56834323-C-T ***
16535487-C-A 14423607-C-A ***
15909821-C-A 13797941-C-A ***
22146188-G-GTT 19984302-G-GTT 13×T***
14424174-G-T 12303449-G-T ***
14931235-C-A 12819300-C-A ***
18125759-GGAAA-G,GGAAAGAAAGAAA 16013879-GGAAA-G,GGAAAGAAAGAAA 13×GAAA***
6996976-C-T 7128935-C-T ***
18822017-C-A 16710137-C-A ***
19411084-C-A 17299204-C-A ***
13317983-C-A 11162307-C-A A17120 ***
19356574-C-T 17244694-C-T ***
19308765-C-A 17196885-C-A ***
19278514-GTTT-G 17166634-GTTT-G 15×T***
6778386-C-A 6910345-C-A ***
6743077-C-A 6875036-C-A ***
18984171-A-T 16872291-A-T 8×T***
6734544-C-A 6866503-C-A ***
18833857-C-A 16721977-C-A ***
16505485-C-A 14393605-C-A ***
9907670-G-T 10070061-G-T ***
14550478-T-G 12438679-T-G ***
6385712-C-G 6517671-C-G ***
14722411-T-G 12610479-T-G ***
14735140-C-A 12623208-C-A ***
14745225-C-A 12633294-C-A ***
14751521-C-A 12639590-C-A ***
14811076-A-G 12699147-A-G ***
18550790-C-A 16438910-C-A ***
18537963-C-A 16426083-C-A ***
18388216-C-A 16276336-C-A P6_Gap ***
17332750-C-CAAA 15220870-C-CAAA 22×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 742239847062869847586945356
Used in age calculations847062869847586945356
Counts of SNPs1718
Variant counts last updated 2018-06-18 20:57:13.



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