Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF41/S524 > Z43690 > A874

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
314759
19880570-G-C 17768690-G-C P5_Prx A*
13687257-G-A 11531581-G-A A*
19875394-A-G 17763514-A-G P5_Prx A*
19700492-G-A 17588612-G-A P5_Prx A*
28817265-G-T 26671118-G-T A*
19967749-C-T 17855869-C-T P5_Prx A*
13687586-G-C 11531910-G-C A*
26167353-A-G 24021206-A-G P1_Y1 A*
8132819-T-C 8264778-T-C BY42499 YY+
17767812-G-A 15655932-G-A BY42511 YY+
23516314-A-C 21354428-A-C BY145913 YY+
23396527-T-G 21234641-T-G BY42518 YY+
17095033-T-C 14983153-T-C BY112259 YY+
22803004-T-C 20641118-T-C BY42517 YY+
17254475-C-G 15142595-C-G BY113309 YY+
17342040-T-C 15230160-T-C BY42509 YY+
17420814-A-T 15308934-A-T BY42510 YY+
18027395-C-T 15915515-C-T BY42512 Y+
24001650-G-A 21855503-G-A BY42520 Y+
18107868-T-C 15995988-T-C BY42514 YY+
9979813-A-G 10142204-A-G BY42502 Y+
18805375-C-T 16693495-C-T BY123972 YY+
18839711-C-T 16727831-C-T BY42515 YY+
19202642-C-T 17090762-C-T BY42516 YY+
22052904-A-C 19891018-A-C BY43643 YY+
18102496-C-T 15990616-C-T BY42513 YY+
23615197-C-T 21453311-C-T BY42519 YY+
16534759-T-A 14422879-T-A BY42508 YY+
7831046-A-G 7963005-A-G BY42498 YY+
14883644-C-G 12771710-C-G BY42504 YY+
7429942-C-G 7561901-C-G BY65187 YY+
8139554-C-T 8271513-C-T BY42500 YY+
8172209-C-T 8304168-C-T BY42501 YY+
28804913-T-G 26658766-T-G BY42521 +
28732282-T-TA 26586135-T-TA 8×A+
14088746-G-C 11968040-G-C BY92911 Y+
14697334-C-G 12585400-C-G BY42503 YY+
14896482-G-A 12784548-G-A BY42505 YY+
18078022-G-A 15966142-G-A BY119776 YY+
15111084-A-T 12999171-A-T BY42506 YY+
15388829-T-G 13276949-T-G BY42507 YY+
15440270-T-C 13328390-T-C BY101587 YY+
15544846-GT-G 13432966-GT-G +
9158533-T-C 9320924-T-C BY78645 +
15654086-A-G 13542206-A-G L370 YY+
2693232-C-T 2825191-C-T FGC33600 YY+
8212037-G-T 8343996-G-T FGC61076 YY+
33242-G-C *
18685627-CTGTGTG-C 16573747-CTGTGTG-C 17×TG*
22224973-G-T 20063087-G-T DYZ19 *
21163134-A-C 19001248-A-C **
13460371-A-T 11304695-A-T **
13629108-T-G 11473432-T-G **
13577036-G-T 11421360-G-T **
13504133-G-A 11348457-G-A **
13480664-C-A 11324988-C-A **
13255498-C-A 11099822-C-A **
28812245-G-T 26666098-G-T **
13236281-C-T 11080605-C-T FGC62903 **
13227807-T-G 11072131-T-G **
13199150-G-T 11043474-G-T **
11035919-C-A **
11035886-A-T **
11025275-T-G **
11016537-C-A **
28818912-G-T 26672765-G-T **
13855302-GA-G 11734596-GA-G **
11001579-C-CAATCCACTCA **
14187216-G-A 12066510-G-A **
14464258-C-A 12343531-C-A **
14446979-G-T 12326252-G-T **
14420382-A-G 12299657-A-G **
14395640-T-G 12274936-T-G **
14339315-T-G 12218610-T-G **
14196374-T-C 12075668-T-C **
14184321-G-T 12063615-G-T **
13857655-G-A 11736949-G-A **
14176335-C-A 12055629-C-A **
28667016-C-A 26520869-C-A **
14070021-T-C 11949315-T-C **
14007587-A-G 11886881-A-G **
13953124-C-A 11832418-C-A **
13948181-G-T 11827475-G-T **
13878956-G-T 11758250-G-T **
11008147-A-T **
10996841-TCCACTCCACTCCATTATATTCCACC-T **
11001559-C-T **
10847320-A-T **
10894988-T-C **
10893483-CTCTCT-C **
10893480-C-T **
10893471-C-T **
10889625-C-A **
10848183-G-T **
10844669-A-G **
10938580-A-T **
10840937-C-T **
10834533-T-G **
10824164-T-G **
10821472-C-A **
10812356-T-C **
10804287-A-T **
10912186-T-G **
10938585-A-T **
14550689-G-A 12438890-G-A **
56838820-C-A **
10995819-C-CA **
10992368-T-C **
56771170-A-T **
10987351-G-A **
10987125-T-C **
56771192-T-C **
56840652-G-T **
10951790-A-C **
56866685-G-T **
10976942-C-G **
10969971-T-C **
10961571-C-A **
10959261-CTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCAT-C **
10954321-C-A **
56873831-G-T **
14550153-G-T 12438354-G-T **
14555058-A-G 12443259-A-G **
21111731-C-A 18949845-C-A **
17827497-A-G 15715617-A-G **
18520544-G-T 16408664-G-T P6_Dst **
18299443-C-A 16187563-C-A P6_Prx **
22221977-G-C 20060091-G-C DYZ19 **
18231432-T-C 16119552-T-C **
18188536-G-A 16076656-G-A **
22252525-C-A 20090639-C-A DYZ19 **
17825321-C-T 15713441-C-T **
22058745-T-C 19896859-T-C **
22424964-A-G 20263078-A-G DYZ19 **
17648306-T-G 15536426-T-G **
17608366-A-T 15496486-A-T **
17534731-G-A 15422851-G-A **
22427515-T-C 20265629-T-C DYZ19 **
17380661-C-A 15268781-C-A **
18756169-C-A 16644289-C-A **
21920545-T-G 19758659-T-G **
22447944-G-A 20286058-G-A DYZ19 **
19847755-G-T 17735875-G-T P5_Prx **
20786631-C-A 18624745-C-A P4_Prx **
20778585-A-T 18616699-A-T P4_Prx **
20734097-AAAAAATATTCTTT-A 18572211-AAAAAATATTCTTT-A P4_Prx **
21206981-C-A 19045095-C-A **
21352673-G-T 19190787-G-T **
21569958-TAAAAAAAAAAAAAAAAAAAAAAAAAAA-T 19408072-TAAAAAAAAAAAAAAAAAAAAAAAAAAA-T 46×A**
19774223-C-A 17662343-C-A P5_Prx **
18986801-A-C 16874921-A-C BY125290 **
21697688-G-A 19535802-G-A **
19694847-T-G 17582967-T-G P5_Prx **
19462222-A-G 17350342-A-G **
19303664-C-A 17191784-C-A **
19245269-G-A 17133389-G-A **
21821148-G-T 19659262-G-T **
19097317-A-C 16985437-A-C **
17375230-A-C 15263350-A-C **
22511963-G-A 20350077-G-A BY50558 BY50572 DYZ19 **
14682040-G-A 12570106-G-A **
27908563-T-G 25762416-T-G P1_Y2 **
15370205-G-C 13258325-G-C **
15370203-T-A 13258323-T-A **
15333527-G-T 13221645-G-T **
15178595-C-A 13066681-C-A **
15150776-G-T 13038863-G-T **
15115336-G-T 13003423-G-T **
15047486-C-A 12935577-C-A **
27908549-CTTTTTCTA-C 25762402-CTTTTTCTA-C P1_Y2 **
28008315-T-C 25862168-T-C P1_Y2 **
28581156-G-T 26435009-G-T **
14760786-A-C 12648855-A-C **
14756509-C-A 12644578-C-A **
28594308-C-A 26448161-C-A **
14695827-C-A 12583893-C-A **
27908562-T-G 25762415-T-G P1_Y2 **
27860958-CT-C 25714811-CT-C P1_Y2 **
17127384-C-A 15015504-C-A **
16092905-A-C 13981025-A-C **
23017512-T-C 20855626-T-C **
16701489-A-T 14589609-A-T **
16653335-C-A 14541455-C-A **
24278062-C-A 22131915-C-A P3_b1 **
16383689-C-A 14271809-C-A **
24389907-T-G 22243760-T-G **
24406975-A-C 22260828-A-C **
15606620-A-G 13494740-A-G **
16058789-C-A 13946909-C-A **
16001142-T-G 13889262-T-G **
10798302-A-T **
15943651-C-T 13831771-C-T **
15855197-G-T 13743317-G-T **
15758652-C-A 13646772-C-A **
24491484-C-A 22345337-C-A **
15943730-G-A 13831850-G-A **
5981398-C-T 6113357-C-T **
10793210-C-A **
10678629-AT-A **
13457808-T-A 11302132-T-A **
13457776-C-CCCTGT 11302100-C-CCCTGT **
5761633-C-A 5893592-C-A **
14473661-T-TA 12352930-T-TA 8×A**
9499028-C-A 9661419-C-A **
26047627-T-C 23901480-T-C P1_Y1 **
10846226-C-A **
10988008-C-A **
10989146-C-A **
11011494-A-G **
3659140-G-T 3791099-G-T **
13457814-T-G 11302138-T-G **
10893095-C-A **
20434658-C-A 18272772-C-A P5_Dst **
10913821-T-C **
10913796-A-T **
10913783-G-A **
10809260-C-A **
10660816-A-T **
10913764-T-A **
5354792-ATTT-A 5486751-ATTT-A 16×T**
3008970-G-T 3140929-G-T **
2926531-C-A 3058490-C-A **
2885489-G-C 3017448-G-C **
2697453-T-G 2829412-T-G **
15671186-G-T 13559306-G-T **
10768662-C-A **
11668299-G-A **
4460694-C-A 4592653-C-A **
13566728-G-T 11411052-G-T **
15952078-AT-A 13840198-AT-A **
24869984-C-A 22723837-C-A P3_b2 **
20050736-T-G 17938856-T-G P5_Prx **
19168763-C-A 17056883-C-A **
10768675-C-T **
14483633-C-A 12362902-C-A **
10992749-A-C **
18340499-CA-C 16228619-CA-C P6_Prx **
10808948-C-A **
10913768-C-T **
10913718-AAG-A **
3099899-G-T 3231858-G-T **
15717996-T-G 13606116-T-G **
10796516-A-C **
10796513-T-C **
10796505-C-G **
10796502-T-A **
10796497-A-T **
10796484-T-C **
10796481-C-T **
19744961-C-A 17633081-C-A P5_Prx **
10679065-A-T **
10768715-C-T **
21458642-C-A 19296756-C-A **
15286480-G-. 13174579-C-G **
10757341-ACTAAC-A **
10808073-T-C **
10938309-C-T **
17474945-CT-C 15363065-CT-C 15×T**
18447598-G-T 16335718-G-T P6_Dst **
59017245-C-T 56871098-C-T **
7713361-T-G 7845320-T-G **
10673547-C-A **
10913715-A-T **
13589008-C-A 11433332-C-A **
22613971-C-A 20452085-C-A **
10893470-G-C **
10935951-C-A **
6037572-C-A 6169531-C-A **
27077150-G-T 24931003-G-T P1_r4 **
10937849-C-A **
6130202-G-T 6262161-G-T **
28798735-C-A 26652588-C-A **
5981436-G-A 6113395-G-A **
10993193-C-A **
10894789-G-T **
10759986-A-T **
28460911-C-A 26314764-C-A **
56862613-T-C **
2758309-C-A 2890268-C-A **
10885269-T-A **
13902064-C-A 11781358-C-A **
10970854-T-A **
3025186-C-A 3157145-C-A **
4408904-GAAA-G 4540863-GAAA-G 13×A**
10768701-T-C **
6581558-G-A 6713517-G-A **
7158014-T-G 7289973-T-G **
7142899-C-A 7274858-C-A **
7140492-C-A 7272451-C-A **
7110553-G-A 7242512-G-A **
7063763-C-T 7195722-C-T **
6729679-C-A 6861638-C-A **
6591232-A-G 6723191-A-G **
6357971-A-G 6489930-A-G **
7322796-C-A 7454755-C-A **
3114151-G-T 3246110-G-T **
6312786-T-G 6444745-T-G IR3_Dst **
6121058-C-T 6253017-C-T **
5960477-C-A 6092436-C-A **
5859145-G-A 5991104-G-A **
5841661-A-C 5973620-A-C **
5803817-C-A 5935776-C-A **
5789820-G-T 5921779-G-T **
7210645-G-A 7342604-G-A **
7459727-T-G 7591686-T-G IR1_L **
5527973-T-C 5659932-T-C **
10687095-C-A **
10768645-T-A **
10767272-C-A **
10760017-T-TTTATC **
10757404-C-G **
10757399-C-T **
10692715-C-A **
10692139-C-A **
10690876-T-A **
10678646-T-A **
7782985-T-G 7914944-T-G **
10677077-C-T **
10654258-T-G **
10044357-G-T 10206748-G-T **
9900176-G-A 10062567-G-A **
9512550-A-C 9674941-A-C **
9076714-T-C 9239105-T-C **
8968465-C-A 9130856-C-A **
9117614-C-T **
5768066-T-A 5900025-T-A **
6352910-G-A 6484869-G-A **
5138497-A-G 5270456-A-G **
3621001-A-C 3752960-A-C **
4311238-C-A 4443197-C-A **
4076460-C-A 4208419-C-A **
3990344-A-T 4122303-A-T **
3889352-G-T 4021311-G-T **
5093254-T-A 5225213-T-A **
3774146-ACTG-A 3906105-ACTG-A **
3663647-G-T 3795606-G-T **
3507900-G-GA 3639859-G-GA 10×A**
4345314-C-A 4477273-C-A **
3437277-C-A 3569236-C-A **
3437253-C-A 3569212-C-A **
3309650-C-A 3441609-C-A **
3287611-GC-G 3419570-GC-G **
3270600-T-C 3402559-T-C **
3247168-A-G 3379127-A-G **
3229457-T-G 3361416-T-G **
4312486-C-A 4444445-C-A **
3839126-C-A 3971085-C-A **
4762663-C-A 4894622-C-A **
4762708-T-G 4894667-T-G **
5076750-G-T 5208709-G-T **
4997954-C-T 5129913-C-T **
4444197-C-A 4576156-C-A **
4789010-C-A 4920969-C-A **
4976764-G-T 5108723-G-T **
4571343-G-T 4703302-G-T **
4589807-G-T 4721766-G-T **
4838994-C-A 4970953-C-A **
4762709-A-G 4894668-A-G **
4937094-C-A 5069053-C-A **
4950883-A-C 5082842-A-C **
13869169-G-C 11748463-G-C ***
13453173-C-G 11297497-C-G ***
22048523-CA-C,CAA 19886637-CA-C,CAA 13×A***
15209547-G-T 13097633-G-T ***
2718881-CTTTTTTT-C,CTTTTTT 2850840-CTTTTTTT-C,CTTTTTT 21×T***
10768596-A-G,T ***
10757282-C-A ***
2750839-CAA-C,CAAA 2882798-CAA-C,CAAA 16×A***
56832537-CAC-C,CAA ***
2752725-CAAAAAAA-C 2884684-CAAAAAAA-C 18×A***
56841441-G-C ***
11003708-CACTCA-C ***
10652643-C-A ***
10673939-ATTGC-A,ATTCC ***
21320174-G-T 19158288-G-T ***
22068801-C-A 19906915-C-A ***
11007905-C-T ***
22579984-C-A 20418098-C-A ***
7183521-G-A 7315480-G-A ***
17942161-A-G 15830281-A-G ***
22457494-AGCATTTAAAG-A 20295608-AGCATTTAAAG-A DYZ19 ***
23019931-T-C 20858045-T-C ***
10661903-C-A ***
17374413-C-T 15262533-C-T ***
14319448-GATATAT-G 12198742-GATATAT-G 8×AT***
17533824-GAAAA-G 15421944-GAAAA-G 21×A***
10937379-C-A ***
10032874-G-T 10195265-G-T ***
6347830-AAG-A 6479789-AAG-A ***
9498925-C-A 9661316-C-A ***
3099939-A-T 3231898-A-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 314759992018280805837944455
Used in age calculations992018280805837944455
Counts of SNPs3531
Variant counts last updated 2018-06-18 20:57:09.



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