Hush

BigY2: 542901
MDKA Birth: United States > Ohio

Tree Position

R-U106/S21 > Z2265 > Z381/S263 > Z301/S499 > L48 > Z9 > Z347 > Z328 > ZZ68 > A5870 > A5873 > A5869 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
542901
22345113-G-T 20183227-G-T DYZ19 A*
7010710-A-T 7142669-A-T BY62838 YY+
7557225-C-T 7689184-C-T BY65888 YY+
8666041-C-T 8798000-C-T BY75056 YY+
8778371-C-G 8910330-C-G BY75828 YY+
15810224-CATT-C 13698344-CATT-C +
16236014-A-T 14124134-A-T BY106220 YY+
16388471-A-G 14276591-A-G BY107424 YY+
19454821-G-A 17342941-G-A BY129223 YY+
21049580-G-C 18887694-G-C BY130123 YY+
22712806-C-T 20550920-C-T BY140245 YY+
22834416-A-G 20672530-A-G BY141146 YY+
22233670-C-G 20071784-C-G BY213571 DYZ19 *
22346460-T-A 20184574-T-A DYZ19 *
28792582-T-G 26646435-T-G *
19436762-G-A 17324882-G-A BY211828 **
13803913-A-C 11683207-A-C **
27585898-G-T 25439751-G-T P1_Y2 **
58874790-A-T 56716081-T-A **
26141314-C-A 23995167-C-A P1_Y1 **
21464768-C-G 19302882-C-G FT452954 **
21427210-C-A 19265324-C-A **
14388602-G-A 12267898-G-A Z42698 Y28761 **
21037304-C-A 18875418-C-A **
4133916-C-A 4265875-C-A **
17407840-C-A 15295960-C-A **
5957343-C-A 6089302-C-A **
10964837-C-T **
14402476-C-A 12281773-C-A **
21472175-TAA-T 19310289-TAA-T 14×A**
13810925-A-C 11690219-A-C **
11665579-C-T **
6429510-C-A 6561469-C-A **
13288775-C-A 11133099-C-A **
10895852-A-GGTCTG **
28743028-C-A 26596881-C-A **
10781137-A-C **
11014093-C-A **
18838744-C-A 16726864-C-A **
10748341-C-A **
5221044-T-A 5353003-T-A **
13643014-C-A 11487338-C-A **
10892462-C-A **
22914674-C-A 20752788-C-A 27×A**
21253974-C-A 19092088-C-A **
22335165-T-A 20173279-T-A DYZ19 **
10951228-A-T **
3726367-C-A 3858326-C-A **
11010304-C-A **
10951709-T-C **
7384807-C-A 7516766-C-A FT401258 **
22207299-C-A 20045413-C-A **
17448595-C-A 15336715-C-A **
14742021-C-T 12630089-C-T **
24637481-TG-T 22491334-TG-T P3_t2 **
10789794-T-G **
17056522-C-A 14944642-C-A **
10070134-G-A 10232525-G-A **
5869982-C-CTT 6001941-C-CTT 11×T**
10951248-CACATTTCTTTT-C **
10951261-ACC-A **
7100954-CTTTTT-C 7232913-CTTTTT-C 32×T**
26099774-C-T 23953627-C-T P1_Y1 **
10951710-T-C **
10814596-G-T **
16905869-TCA-T 14793989-TCA-T **
8850135-C-A 8982094-C-A **
15623344-AT-A 13511464-AT-A **
13216619-C-A 11060943-C-A **
14420197-C-A 12299472-C-A Y91388 **
26376518-G-T 24230371-G-T P1_Y1 **
17466604-T-C 15354724-T-C **
24402468-C-A 22256321-C-A **
10748756-C-A **
28496872-C-A 26350725-C-A **
10958911-C-A **
10781015-G-T **
7228343-C-A 7360302-C-A **
4527947-C-A 4659906-C-A **
23115201-C-A 20953315-C-A **
14593753-C-A 12481953-C-A **
8371832-C-A 8503791-C-A **
18778889-C-A 16667009-C-A **
17466556-A-C 15354676-A-C **
13491096-C-A 11335420-C-A **
15608048-T-C 13496168-T-C **
6461487-C-A 6593446-C-A **
14230120-C-A 12109414-C-A **
10752346-T-A **
13484535-C-A 11328859-C-A **
19479722-TGTGTGTGC-T 17367842-TGTGTGTGC-T **
8878799-G-T 9010758-G-T **
17170371-C-A 15058491-C-A **
18286722-C-A 16174842-C-A P6_Prx **
13810907-T-G 11690201-T-G **
16701647-C-A 14589767-C-A **
19200959-A-G 17089079-A-G **
10787942-C-A **
19112608-C-A 17000728-C-A **
28766204-A-G 26620057-A-G **
21133556-C-CAA 18971670-C-CAA 23×A**
16729933-C-A 14618053-C-A **
22658533-C-A 20496647-C-A **
18172963-C-A 16061083-C-A **
7705665-C-A 7837624-C-A **
18966095-C-A 16854215-C-A **
5926846-C-T 6058805-C-T **
5612887-C-A 5744846-C-A **
2698151-G-T 2830110-G-T **
2795534-A-T 2927493-A-T **
2798927-C-A 2930886-C-A **
3154188-T-G 3286147-T-G **
3271571-C-A 3403530-C-A **
3285079-T-G 3417038-T-G **
3662622-C-T 3794581-C-T **
3726383-C-A 3858342-C-A **
3960131-G-T 4092090-G-T **
4335667-G-T 4467626-G-T **
4401666-G-T 4533625-G-T **
4526721-A-T 4658680-A-T **
4532360-G-A 4664319-G-A **
4672400-C-T 4804359-C-T **
5114582-C-A 5246541-C-A **
5565150-T-G 5697109-T-G **
5707716-T-C 5839675-T-C **
5817310-T-A 5949269-T-A **
5820244-T-A 5952203-T-A **
5861233-C-A 5993192-C-A **
6132547-T-A 6264506-T-A **
6374079-G-T 6506038-G-T **
7043468-C-T 7175427-C-T **
7052927-C-T 7184886-C-T **
7134799-C-G 7266758-C-G **
7182289-C-A 7314248-C-A **
7196203-T-G 7328162-T-G **
7248514-G-T 7380473-G-T **
7253241-A-G 7385200-A-G **
7274878-C-A 7406837-C-A **
7307751-A-C 7439710-A-C **
7783247-C-A 7915206-C-A **
8912596-G-T 9044555-G-T **
9007091-G-T 9169482-G-T **
9397925-C-A 9560316-C-A **
9577063-C-A 9739454-C-A IR3_Prx **
9666960-A-C 9829351-A-C IR3_Prx **
10666629-C-A **
10686952-C-G **
10687109-A-C **
10758988-C-A **
10770574-A-G **
10781295-A-G **
10795779-C-A **
10801445-T-C **
10801451-CTATTCCGTTTGGTT-C **
10801467-TG-T **
10801640-T-G **
10801645-T-A **
10801671-C-CGGGTA **
10809287-CCCCTG-C **
10849401-C-A **
10860591-C-A **
10884152-C-T **
10921508-T-A **
10929002-C-A **
10951701-A-G **
10951707-T-G **
10953469-C-A **
10954065-C-A **
10954089-T-C **
10954102-ACTC-A **
10962633-C-A **
10998936-G-A **
11005271-C-A **
11011250-C-A **
11014192-C-G **
11025932-C-G **
11025940-T-C **
11038040-C-A **
13215278-T-C 11059602-T-C **
13256139-C-A 11100463-C-A **
13485744-T-G 11330068-T-G **
13485784-C-T 11330108-C-T **
13583429-C-A 11427753-C-A **
13583559-C-A 11427883-C-A **
13611119-C-A 11455443-C-A **
13643047-G-T 11487371-G-T **
13748363-A-C 11592687-A-C **
11651382-G-T **
11651383-A-C **
11665609-C-T **
11665625-C-T **
11672637-G-A **
13859929-AGAATG-A 11739223-AGAATG-A 4×GAATG**
13962219-T-G 11841513-T-G **
13973207-G-T 11852501-G-T **
14030755-G-A 11910049-G-A **
14046585-C-A 11925879-C-A **
14229716-C-A 12109010-C-A **
14330820-C-A 12210114-C-A **
14388607-ATTT-A 12267903-ATTT-A 8×T**
14506830-C-G 12395035-C-G **
14518274-C-A 12406475-C-A **
14533096-G-T 12421297-G-T **
14552778-A-C 12440979-A-C **
14582221-G-T 12470421-G-T **
14627299-C-A 12515367-C-A **
14661670-G-A 12549735-G-A **
14785532-C-CTTT 12673602-C-CTTT 18×T**
14844443-AT-A 12732509-AT-A **
14985228-G-T 12873296-G-T **
15181741-T-C 13069827-T-C **
15234007-C-A 13122093-C-A **
15322522-A-G 13210640-A-G **
15392512-C-A 13280632-C-A **
15400284-C-A 13288404-C-A **
15541671-C-T 13429791-C-T **
15608036-T-G 13496156-T-G **
15677903-A-G 13566023-A-G **
15808974-G-T 13697094-G-T **
15911481-C-A 13799601-C-A **
15943571-C-T 13831691-C-T **
16042761-C-A 13930881-C-A **
16180149-C-A 14068269-C-A **
16318191-C-A 14206311-C-A **
16322266-A-G 14210386-A-G **
16354320-C-A 14242440-C-A **
16404277-C-A 14292397-C-A **
16413679-TCC-T 14301799-TCC-T **
16572667-C-A 14460787-C-A **
16607610-G-T 14495730-G-T **
16921268-T-G 14809388-T-G **
17170413-T-A 15058533-T-A **
17330263-C-A 15218383-C-A **
17385297-GCCAGGCA-G 15273417-GCCAGGCA-G **
17466592-C-T 15354712-C-T FTB33690 **
17466594-G-C 15354714-G-C **
17466596-G-A 15354716-G-A **
17466612-CA-C 15354732-CA-C **
17624432-C-G 15512552-C-G **
17944033-C-A 15832153-C-A **
18472825-G-T 16360945-G-T P6_Dst **
18749399-C-A 16637519-C-A **
18756098-A-G 16644218-A-G **
18789567-C-CA 16677687-C-CA **
18789574-G-T 16677694-G-T **
18940750-C-A 16828870-C-A **
18956322-A-G 16844442-A-G **
19040804-C-A 16928924-C-A **
19077182-A-G 16965302-A-G Y55322 **
19275290-C-G 17163410-C-G **
19436758-G-A 17324878-G-A BY47825 **
19655343-CTGTTG-C 17543463-CTGTTG-C P5_Prx **
19655352-T-A 17543472-T-A P5_Prx **
19655357-T-A 17543477-T-A P5_Prx **
19817555-A-C 17705675-A-C P5_Prx **
20020715-C-A 17908835-C-A P5_Prx **
20809970-C-A 18648084-C-A P4_Gap **
21135005-C-A 18973119-C-A **
21201416-C-A 19039530-C-A **
21775233-G-T 19613347-G-T **
21794572-C-A 19632686-C-A **
21809932-G-C 19648046-G-C **
21888524-C-T 19726638-C-T **
22060198-C-A 19898312-C-A **
22101037-G-T 19939151-G-T **
22149886-T-C 19988000-T-C **
22155628-ACCTGATTT-A 19993742-ACCTGATTT-A **
22252472-T-G 20090586-T-G DYZ19 **
22449653-C-A 20287767-C-A DYZ19 **
22651112-G-T 20489226-G-T **
22893593-C-G 20731707-C-G **
23061193-C-A 20899307-C-A **
23249315-A-T 21087429-A-T **
23294278-C-A 21132392-C-A **
23554865-C-A 21392979-C-A **
23609512-C-G 21447626-C-G **
23848158-G-T 21686272-G-T **
24483960-C-A 22337813-C-A **
26046123-C-A 23899976-C-A P1_Y1 **
26120124-C-A 23973977-C-A P1_Y1 **
27633808-A-C 25487661-A-C P1_Y2 **
27937095-C-A 25790948-C-A P1_Y2 **
28493636-C-A 26347489-C-A **
28496517-T-G 26350370-T-G **
28520443-A-C 26374296-A-C **
28540493-C-A 26394346-C-A **
28541707-G-A 26395560-G-A **
28549866-A-C 26403719-A-C **
28558935-A-G 26412788-A-G **
28596789-C-A 26450642-C-A **
28605768-C-A 26459621-C-A **
28726183-C-A 26580036-C-A **
28732959-G-A 26586812-G-A **
28766186-T-C 26620039-T-C **
28766187-G-C 26620040-G-C **
28766197-G-A 26620050-G-A **
28766210-G-A 26620063-G-A **
28766213-G-A 26620066-G-A **
28766214-G-T 26620067-G-T FT285365 **
56728125-T-A **
56771094-GAGTGC-G **
56771107-T-C **
56771157-T-A **
13254860-G-A 11099184-G-A ***
28661351-GATCC-G 26515204-GATCC-G 10×ATCC***
19048320-CTA-C 16936440-CTA-C ***
6674465-ATT-A,AT 6806424-ATT-A,AT 16×T***
16766412-C-A 14654532-C-A ***
16134295-C-A 14022415-C-A FTB69940 10×TAAA***
21946308-C-A 19784422-C-A ***
17491632-C-A 15379752-C-A ***
8386111-A-C 8518070-A-C ***
4503079-G-T 4635038-G-T ***
14836437-C-A 12724504-C-A ***
14464165-ATTT-A,ATTTT 12343438-ATTT-A,ATTTT 18×T***
7294868-C-A 7426827-C-A ***
10999882-T-G ***
19518537-C-A 17406657-C-A ***
19302747-G-T 17190867-G-T ***
6401328-C-A 6533287-C-A ***
15167898-C-A 13055984-C-A ***
22091473-C-A 19929587-C-A ***
14753933-CA-C,CAA 12642002-CA-C,CAA 12×A***
15254638-C-A 13142724-C-A ***
14272587-C-A 12151881-C-A ***
19253193-G-T 17141313-G-T ***
15957651-C-A 13845771-C-A ***
23625767-C-A 21463881-C-A ***
6744544-C-A 6876503-C-A ***
18986049-C-A 16874169-C-A FT91296 ***
3621514-G-T 3753473-G-T ***
10029916-C-A 10192307-C-A ***
17755384-TAA-T,TA 15643504-TAA-T,TA 17×A***
19270671-C-A 17158791-C-A ***
2888231-A-ATT 3020190-A-ATT 12×T***
3852194-C-A 3984153-C-A ***
5761291-T-TA 5893250-T-TA 8×A***
6689793-C-A 6821752-C-A ***
7058064-C-CT 7190023-C-CT ***
7172605-G-T 7304564-G-T ***
7522783-A-G 7654742-A-G ***
8130647-G-T 8262606-G-T ***
8902177-G-C 9034136-G-C ***
13458240-C-A 11302564-C-A ***
13465395-C-A 11309719-C-A FT444002 ***
13719476-G-T 11563800-G-T ***
14060701-A-G 11939995-A-G ***
14592032-C-A 12480232-C-A ***
14997930-C-A 12886015-C-A ***
15021685-GTT-G 12909774-GTT-G 13×T***
15258909-C-A 13146993-C-A ***
15476807-C-T 13364927-C-T ***
15549820-GAA-G,GAAA 13437940-GAA-G,GAAA 14×A***
15588669-G-T 13476789-G-T ***
15772540-A-C 13660660-A-C ***
16503465-CCT-C 14391585-CCT-C ***
16607491-T-C 14495611-T-C FGC75337 Y137375 ***
16923187-C-A 14811307-C-A ***
17374411-A-C 15262531-A-C ***
17403627-C-A 15291747-C-A ***
17844246-C-A 15732366-C-A ***
18103048-C-A 15991168-C-A ***
18108542-C-A 15996662-C-A ***
18646326-T-A 16534446-T-A Y54712 ***
18664659-C-A 16552779-C-A ***
19074929-C-A 16963049-C-A ***
19122323-C-A 17010443-C-A ***
21189420-C-A 19027534-C-A ***
21491260-G-T 19329374-G-T ***
22138193-C-T 19976307-C-T ***
22170451-G-T 20008565-G-T ***
22562480-C-A 20400594-C-A ***
22577692-C-A 20415806-C-A ***
22747717-CTTT-C,CTTTT 20585831-CTTT-C,CTTTT 14×T***
23473741-G-A 21311855-G-A ***
23556004-C-A 21394118-C-A ***
24434444-C-A 22288297-C-A ***
56834446-TCCCTTCCATTC-T,TCCCTTCCACTCCGTTC ***
56847264-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.