Roberson

BigY2: N16476
MDKA Birth: United States > Virginia

Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > FGC11134 > A353 > Z16250 > A114 > CTS4466/S1136 > S1115 > A541 > S1121 > Z16251 > A159 > A20860

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
N16476
6330491-T-C 6462450-T-C IR3_Dst A*
26018197-G-GT 23872050-G-GT P1_Y1 9×TA*
19586879-G-C 17474999-G-C P5_Prx YA*
14748552-C-T 12636621-C-T A20862 YY+
21473423-G-T 19311537-G-T A20863 YY+
22258070-A-T 20096184-A-T DYZ19 +
13489490-C-T 11333814-C-T *
28808606-A-C,G 26662459-A-C,G *
3718831-T-A 3850790-T-A *
10870467-AGC-A **
10885411-C-A **
10909684-A-G **
10909704-T-A **
9620105-GA-G 9782496-GA-G IR3_Prx 11×A**
10930803-C-A **
10935375-T-C **
10936888-C-A **
10942502-C-A **
10942633-A-G **
10943354-T-G **
10943355-C-T **
10950490-T-C **
10870460-TTGA-T **
10866652-C-A **
10868982-C-G **
10868158-G-A **
10950524-C-T **
10859116-A-T **
10858292-C-A **
10833281-C-A **
10812664-C-CTCTAT **
10798834-T-G **
10797266-C-A **
10796032-G-T **
10791391-C-T **
10767469-T-A **
10766525-T-C **
10760731-T-C **
10759520-T-C **
10950514-T-G **
10963738-C-A **
10963178-C-T **
13460397-C-A 11304721-C-A **
13198982-C-T 11043306-C-T **
13251827-C-A 11096151-C-A **
13294234-C-A 11138558-C-A **
13323774-T-C 11168098-T-C **
13392466-C-A 11236790-C-A **
13457697-ACTCCA-G 11302021-ACTCCA-G **
13493933-G-T 11338257-G-T **
11033690-C-A **
13554587-C-A 11398911-C-A **
13592362-G-T 11436686-G-T **
13631556-A-G 11475880-A-G **
13697599-A-C 11541923-A-C **
11646497-G-T **
11646521-T-A **
11034901-G-A **
11030674-C-A **
10963185-T-A **
10983227-G-T **
10751743-T-A **
10969378-C-A **
10975544-T-C **
10976291-T-C **
10976942-C-T **
10979168-T-G **
10989408-CTCCAT-C **
11030668-A-T **
10996271-T-A **
10997452-A-C **
10997453-G-A **
10997459-T-C **
11001869-GCACAATCTCAGCTCA-G **
11024618-C-A **
10751746-C-A **
10751700-A-C **
10751734-A-T **
4932921-G-T 5064880-G-T **
6630635-G-T 6762594-G-T **
6590309-G-A 6722268-G-A **
6444212-G-T 6576171-G-T **
6339268-G-T 6471227-G-T IR3_Dst **
6058186-G-T 6190145-G-T **
5980582-C-A 6112541-C-A **
5819835-C-A 5951794-C-A **
5644641-G-C 5776600-G-C **
5242597-T-C 5374556-T-C **
5164644-C-A 5296603-C-A **
5155832-G-A 5287791-G-A **
5123072-C-T 5255031-C-T **
5083713-G-A 5215672-G-A **
5064251-G-T 5196210-G-T **
4885655-A-C 5017614-A-C **
6825708-G-T 6957667-G-T **
4166589-C-A 4298548-C-A **
3618989-CA-C 3750948-CA-C **
3696395-A-C 3828354-A-C **
4063818-C-A 4195777-C-A **
4081692-T-C 4213651-T-C **
4095118-T-C 4227077-T-C **
4099222-A-G 4231181-A-G **
4305116-TC-T 4437075-TC-T **
4810959-C-A 4942918-C-A **
4366722-G-T 4498681-G-T **
4401795-C-A 4533754-C-A **
4417790-C-A 4549749-C-A **
4581662-C-T 4713621-C-T **
4670557-G-T 4802516-G-T **
4784868-G-T 4916827-G-T **
6653988-C-A 6785947-C-A **
6862028-C-A 6993987-C-A **
10751722-T-C **
10667718-T-A **
9537704-CTGTG-C 9700095-CTGTG-C IR3_Prx 8×TG**
9965458-T-G 10127849-T-G **
10094171-A-T 10256562-A-T **
10630533-C-A **
10630570-G-C **
10652756-T-A **
10668861-A-G **
9223111-T-G 9385502-T-G **
10668997-C-A **
10744499-C-G **
10748432-C-T **
10749057-C-A **
11666894-C-A **
10751720-G-A **
9492120-G-T 9654511-G-T FGC64502 **
9094311-C-A 9256702-C-A **
7135464-C-A 7267423-C-A **
8267293-C-A 8399252-C-A **
7444116-T-G 7576075-T-G **
7724556-C-T 7856515-C-T **
7861853-A-G 7993812-A-G **
7918545-C-A 8050504-C-A **
8170415-A-C 8302374-A-C **
8170417-A-C 8302376-A-C Z45296 **
8665799-A-T 8797758-A-T **
9078845-C-A 9241236-C-A **
8697821-G-T 8829780-G-T **
8733167-G-T 8865126-G-T **
8748442-C-A 8880401-C-A **
8848444-G-T 8980403-G-T **
9116514-C-A **
8982547-C-A 9144938-C-A **
11646531-C-T **
13998299-C-A 11877593-C-A **
13809153-C-A 11688447-C-A **
22809474-C-A 20647588-C-A **
25858075-A-G 23711928-A-G P1_Y1 **
25858067-A-G 23711920-A-G P1_Y1 **
24643266-A-T 22497119-A-T P3_t2 **
24643254-A-T 22497107-A-T P3_t2 **
24470760-C-A 22324613-C-A **
24244531-G-T 22098384-G-T P3_b1 **
24220734-G-T 22074587-G-T BZ2913 F5423 P3_b1 **
23825652-A-C 21663766-A-C **
23425163-T-C 21263277-T-C **
23401187-C-A 21239301-C-A **
22995909-G-T 20834023-G-T **
22991166-A-C 20829280-A-C **
22886241-C-A 20724355-C-A **
22836996-C-A 20675110-C-A **
22356888-T-A 20195002-T-A DYZ19 **
25858110-C-G 23711963-C-G P1_Y1 **
21616152-C-A 19454266-C-A **
20710134-T-C 18548248-T-C P4_Prx **
20886124-G-GA 18724238-G-GA P4_Dst **
21000918-T-TAGATAC 18839032-T-TAGATAC P4_Dst **
21134828-C-A 18972942-C-A **
21435441-C-A 19273555-C-A **
21486966-G-T 19325080-G-T **
21815153-A-C 19653267-A-C **
22191587-C-A 20029701-C-A **
21961720-GAAA-G 19799834-GAAA-G 12×A**
21964262-G-T 19802376-G-T **
22002387-C-A 19840501-C-A **
22088926-T-G 19927040-T-G **
22088932-C-G 19927046-C-G **
22132972-T-C 19971086-T-C Y57668 **
25858093-G-T 23711946-G-T P1_Y1 **
25985624-T-C 23839477-T-C P1_Y1 **
20710108-A-G 18548222-A-G P4_Prx **
28604685-C-A 26458538-C-A **
28464893-G-T 26318746-G-T **
28497956-C-A 26351809-C-A **
28508261-G-A 26362114-G-A **
28553944-G-T 26407797-G-T **
28593745-C-A 26447598-C-A **
28597882-A-T 26451735-A-T **
28653266-C-T 26507119-C-T **
28064053-C-A 25917906-C-A P1_Y2 **
28722426-G-T 26576279-G-T **
56752206-GGACTGCAATA-G **
15058-A-C **
15067-G-T **
15108-G-T **
15115-G-T **
28385988-G-T 26239841-G-T P1_gr2 **
27610085-A-C 25463938-A-C P1_Y2 **
25999272-C-A 23853125-C-A P1_Y1 **
26120698-A-C 23974551-A-C P1_Y1 **
25999290-C-A 23853143-C-A P1_Y1 **
25999309-C-A 23853162-C-A P1_Y1 **
26073058-C-CTGTT 23926911-C-CTGTT P1_Y1 14×TG**
26120659-G-C 23974512-G-C P1_Y1 **
26120677-C-G 23974530-C-G P1_Y1 **
26120695-T-G 23974548-T-G P1_Y1 **
26120712-A-T 23974565-A-T P1_Y1 **
26740581-A-G 24594434-A-G P1_g2 **
26120727-T-A 23974580-T-A P1_Y1 **
26120736-T-G 23974589-T-G P1_Y1 **
26120740-A-G 23974593-A-G P1_Y1 **
26204685-G-A 24058538-G-A P1_Y1 **
26318703-C-T 24172556-C-T P1_Y1 **
26740574-G-T 24594427-G-T P1_g2 **
20710113-C-T 18548227-C-T P4_Prx **
20710104-T-A 18548218-T-A P4_Prx **
13937122-C-A 11816416-C-A **
14806017-G-C 12694088-G-C **
16413589-G-A 14301709-G-A **
16336308-A-C 14224428-A-C **
16091198-C-A 13979318-C-A **
16045075-G-T 13933195-G-T **
16042897-C-A 13931017-C-A **
16007032-C-A 13895152-C-A **
16000576-A-C 13888696-A-C **
15916249-A-G 13804369-A-G **
15775744-T-A 13663864-T-A **
15490462-C-A 13378582-C-A **
15336540-C-G 13224658-C-G **
15279417-C-A 13167516-C-A Y93429 **
15181715-G-T 13069801-G-T **
14846908-G-A 12734974-G-A **
14683972-C-A 12572038-C-A **
16710404-A-G 14598524-A-G **
14351222-C-A 12230517-C-A **
13943011-A-C 11822305-A-C **
13955961-G-T 11835255-G-T **
3285214-A-C 3417173-A-C **
14130314-G-A 12009608-G-A **
14167915-G-T 12047209-G-T **
14300944-C-A 12180238-C-A **
14351444-C-A 12230739-C-A **
14617386-C-A 12505584-C-A **
14473044-C-A 12352313-C-A **
14483625-A-G 12362894-A-G **
12377697-G-T **
14513326-T-G 12401531-T-G **
14527033-C-A 12415234-C-A **
14569464-T-A 12457664-T-A **
16488039-A-T 14376159-A-T **
17147518-C-T 15035638-C-T **
20710088-C-A 18548202-C-A P4_Prx **
19756281-A-C 17644401-A-C P5_Prx **
19464360-G-T 17352480-G-T **
19520753-A-G 17408873-A-G **
19521973-G-A 17410093-G-A **
19756247-A-C 17644367-A-C P5_Prx **
19756262-C-A 17644382-C-A P5_Prx **
19756272-G-C 17644392-G-C P5_Prx **
19756282-G-C 17644402-G-C P5_Prx **
19346531-A-C 17234651-A-C **
19756295-C-A 17644415-C-A P5_Prx **
20280127-C-T 18118241-C-T P5_Dst **
20440338-C-T 18278452-C-T P5_Dst **
20596500-A-C 18434614-A-C P5_Dst **
20697309-G-T 18535423-G-T P4_Prx **
20710072-C-A 18548186-C-A P4_Prx **
19346545-G-T 17234665-G-T **
19346528-G-C 17234648-G-C **
17188240-T-G 15076360-T-G **
18367746-G-A 16255866-G-A P6_Prx **
17260618-T-C 15148738-T-C **
17285235-A-G 15173355-A-G **
17375527-G-T 15263647-G-T **
17823389-T-A 15711509-T-A **
17895155-T-G 15783275-T-G **
18125558-C-A 16013678-C-A **
18856278-G-A 16744398-G-A **
19346492-T-TTCTC 17234612-T-TTCTC **
18856289-G-A 16744409-G-A **
18856291-T-G 16744411-T-G **
18972696-G-T 16860816-G-T **
19324241-C-A 17212361-C-A **
19346455-T-C 17234575-T-C **
19346477-T-TCTTTCTTC 17234597-T-TCTTTCTTC **
3375670-G-T 3507629-G-T **
4388044-A-C 4520003-A-C **
3264800-G-T 3396759-G-T **
10818732-G-A **
11646530-A-C **
17285239-T-G 15173359-T-G **
28729925-C-A 26583778-C-A **
27971791-G-A 25825644-G-A P1_Y2 **
10992367-T-G **
15823673-C-A 13711793-C-A **
10938369-G-T **
10804468-C-T **
10883716-GCATTC-G **
28791145-G-T 26644998-G-T **
10744491-T-C **
10818752-A-G **
10818728-C-T **
10942639-T-C **
25995084-C-A 23848937-C-A P1_Y1 **
19600496-G-T 17488616-G-T P5_Prx **
11675243-A-C **
10869818-G-T **
10774750-A-G **
10774718-C-T **
10938374-T-C **
10790236-C-A **
10909705-C-A **
10881019-T-A **
23311272-C-CTT 21149386-C-CTT 15×T**
10759317-C-G **
10844225-T-C **
11030679-C-A **
14887890-C-A 12775956-C-A **
10919123-A-G **
18379869-T-TA 16267989-T-TA P6_Prx **
17052732-C-A 14940852-C-A **
22204509-G-T 20042623-G-T **
10909707-C-T **
9654393-G-T 9816784-G-T IR3_Prx **
10689047-CCAT-C **
14030171-C-A 11909465-C-A **
10672791-C-A **
10751703-T-G **
11027298-C-G **
10940025-T-G **
10925385-A-G **
56838648-C-G **
10818742-T-A **
19522703-C-A 17410823-C-A **
21237247-T-A 19075361-T-A **
10870444-T-C **
10870442-C-A **
7228916-C-A 7360875-C-A **
14328391-C-A 12207685-C-A **
10818737-A-T **
11031607-A-T **
11031591-C-A **
11031589-T-A **
10955309-T-G **
3241285-C-A 3373244-C-A **
7206810-C-A 7338769-C-A **
10992380-A-C **
15982133-G-T 13870253-G-T **
13457680-C-G 11302004-C-G **
10950932-A-G **
10934741-T-A **
10759320-C-G **
18928570-CAA-C 16816690-CAA-C 28×A**
26514931-TCACA-T 24368784-TCACA-T P1_Y1 9×CA**
13216470-C-A 11060794-C-A **
58971887-CATAT-C 56825740-CATAT-C 12×AT**
13141054-A-G 10630540-A-G **
2730092-A-ATT 2862051-A-ATT 17×T**
28464901-CT-C 26318754-CT-C 15×T**
8321435-C-T 8453394-C-T 15×T**
59025443-ATTT-A 56879296-ATTT-A 16×T**
14212581-G-T 12091875-G-T CTS2191 Z1598 **
10938340-C-T **
13382379-GAGA-G 11226703-GAGA-G **
7043706-G-T 7175665-G-T Z21809 **
16146484-AAAG-A 14034604-AAAG-A P8_Dst **
59009240-AAC-A 56863093-AAC-A **
59003782-C-T 56857635-C-T **
28712847-ATG-A 26566700-ATG-A 8×TG**
16692785-G-A 14580905-G-A **
5966649-G-T 6098608-G-T **
28548572-C-CT 26402425-C-CT 10×T**
58994251-C-G 56848104-C-G **
58974405-C-T 56828258-C-T **
28597843-C-CT 26451696-C-CT 15×T**
19732411-T-G 17620531-T-G P5_Prx **
10985221-T-G **
11025434-AATTCC-A **
10909574-C-A **
10919160-C-T **
10919143-T-C **
11004508-G-T **
21211824-C-A 19049938-C-A **
22203733-C-A 20041847-C-A **
10976934-G-T **
10942667-T-C **
10841968-C-G **
10958823-T-C **
10844234-A-G **
13476195-G-C 11320519-G-C **
10909580-G-A **
10909515-T-A **
10799429-A-G **
2768294-G-T 2900253-G-T **
2729764-T-G 2861723-T-G **
58883683-C-T 56707188-G-A **
10692534-T-C **
10744476-T-C **
17895165-G-T 15783285-G-T **
10892588-C-A **
10813187-TCC-T **
10813181-T-C **
20215966-AC-A 18054080-AC-A P5_Dst **
13997771-C-CT 11877065-C-CT 17×T**
22995935-C-A 20834049-C-A **
11671010-C-A **
10955275-C-A **
15116-G-T **
20989154-C-G 18827268-C-G P4_Dst 19×AT**
8172836-C-A 8304795-C-A **
6090514-C-A 6222473-C-A **
28506867-C-A 26360720-C-A **
11658620-C-A **
10841122-C-A **
25029916-C-A 22883769-C-A g1 **
28780178-A-G 26634031-A-G **
28635668-C-A 26489521-C-A **
22995914-C-A 20834028-C-A **
15399435-T-A 13287555-T-A **
14781034-C-A 12669104-C-A **
22991149-T-G 20829263-T-G **
7033240-C-CAA 7165199-C-CAA 15×A**
11030644-A-T **
15091-G-T **
10841154-C-A **
17014275-C-A 14902395-C-A **
13487663-C-A 11331987-C-A **
10942652-C-A **
11007308-C-A **
17366880-A-C 15255000-A-C **
17211076-C-A 15099196-C-A **
7110484-C-A 7242443-C-A **
6487798-G-GT 6619757-G-GT 10×T**
7028638-C-A 7160597-C-A **
22587148-G-T 20425262-G-T **
22768164-C-A 20606278-C-A **
10877817-C-A **
15620416-C-A 13508536-C-A **
14465448-C-A 12344721-C-A **
3178357-G-A 3310316-G-A **
3148174-G-T 3280133-G-T **
3089692-G-T 3221651-G-T **
3082117-G-T 3214076-G-T **
2888868-CTCAAAAA-C 3020827-CTCAAAAA-C **
2755442-G-T 2887401-G-T **
13963475-C-A 11842769-C-A **
6862001-C-A 6993960-C-A **
10938414-C-G **
5644655-C-A 5776614-C-A **
6930457-C-A 7062416-C-A **
10798947-C-A **
3501039-C-A 3632998-C-A **
10983233-C-A **
19600524-TGG-T 17488644-TGG-T P5_Prx **
28774388-C-A 26628241-C-A **
9502555-G-T 9664946-G-T **
18098970-C-A 15987090-C-A **
9223103-G-T 9385494-G-T **
3728140-C-A 3860099-C-A **
19950157-A-T 17838277-A-T P5_Prx **
15391281-C-A 13279401-C-A **
4760486-G-T 4892445-G-T **
9735812-G-T 9898203-G-T IR3_Prx **
6786663-C-A 6918622-C-A **
8379410-C-A 8511369-C-A **
11000527-C-A **
26314692-G-T 24168545-G-T P1_Y1 **
10815325-T-C **
19600513-G-A 17488633-G-A P5_Prx **
10668962-C-A **
10804458-C-G **
10812655-A-T **
10991261-A-ATTTTG **
10965038-G-T **
28506593-C-A 26360446-C-A **
22132429-C-A 19970543-C-A **
10693724-CATTCT-C **
15361288-C-A 13249408-C-A **
14605881-G-T 12494083-G-T **
16765517-C-A 14653637-C-A **
10938323-A-T **
10938359-T-G **
4687554-C-A 4819513-C-A **
10818723-C-T **
10938368-A-C **
10841961-T-TTGCAATCGAGTTGAA **
10938375-T-C **
10818717-A-G **
10818716-C-T **
19023336-C-A 16911456-C-A **
10880975-T-C **
11037084-T-C **
9088874-C-A 9251265-C-A **
10878458-C-A **
10751719-T-C **
17480203-C-A 15368323-C-A **
11033701-C-A **
10630553-C-T **
7100769-C-A 7232728-C-A **
21821569-C-A 19659683-C-A **
4889348-C-A 5021307-C-A **
10804485-A-C **
13869152-A-T 11748446-A-T ***
22723386-C-CA,CAA 20561500-C-CA,CAA 17×A***
13570959-A-C 11415283-A-C ***
22111121-CT-C 19949235-CT-C ***
13869114-G-T 11748408-G-T ***
10663788-A-T ***
10999480-G-T ***
10663810-T-TTAGTA ***
23431345-C-A 21269459-C-A ***
10826525-C-A ***
10663794-C-T ***
13453148-C-A 11297472-C-A ***
16905870-CAAAA-C 14793990-CAAAA-C 25×A***
10663766-C-G ***
58838619-C-G 56752252-G-C ***
3990664-CAA-C 4122623-CAA-C 18×A***
8702810-G-GTT 8834769-G-GTT 21×T***
2844149-GTT-G 2976108-GTT-G 16×T***
23127414-C-CAA 20965528-C-CAA 24×A***
15865549-CTTT-C 13753669-CTTT-C 22×T***
2850858-C-CT 2982817-C-CT 13×T***
56742751-G-T ***
28801485-T-A 26655338-T-A ***
56831305-A-T ***
18612759-G-GTA 16500879-G-GTA 15×TA***
22919325-GTTT-G 20757439-GTTT-G 20×T***
58988510-G-T 56842363-G-T ***
9944104-A-T 10106495-A-T ***
13463089-C-T 11307413-C-T ***
19417194-C-A 17305314-C-A ***
10999865-ATT-A,ATA ***
3831377-C-A 3963336-C-A ***
13468319-A-G 11312643-A-G ***
3332191-C-A 3464150-C-A ***
18019832-CTTTTTT-C 15907952-CTTTTTT-C 22×T***
7126524-CTTT-C 7258483-CTTT-C 23×T***
10987222-C-CGTTTG,G ***
58990201-G-T 56844054-G-T ***
13477719-G-C 11322043-G-C ***
10973967-C-CC,CT ***
10689013-C-T ***
22949512-C-CTT 20787626-C-CTT 17×T***
16734846-C-A 14622966-C-A ***
3274807-C-A 3406766-C-A ***
14526955-C-A 12415156-C-A ***
9347988-C-A 9510379-C-A 8×TG***
18925242-C-A 16813362-C-A ***
10984028-C-A ***
18570127-C-A 16458247-C-A ***
22974431-C-A 20812545-C-A ***
10965562-T-C ***
13453242-T-A 11297566-T-A ***
56836928-T-A ***
14143075-C-A 12022369-C-A ***
16913422-CAA-C,CAAA 14801542-CAA-C,CAAA 21×A***
10656928-C-A ***
10997085-G-T ***
21946454-A-G 19784568-A-G ***
14938035-G-T 12826110-G-T ***
16226132-A-C 14114252-A-C ***
10678618-C-G ***
10686188-A-G ***
10797941-ACTCTT-A,ACTC ***
13461394-T-G 11305718-T-G ***
13461402-G-T 11305726-G-T ***
13461407-C-T 11305731-C-T ***
13461433-C-G 11305757-C-G ***
15606985-A-T 13495105-A-T ***
13461444-G-A 11305768-G-A ***
9892472-G-T 10054863-G-T ***
56829273-C-G ***
22159649-A-G 19997763-A-G ***
11676813-AGTGG-A,AATTA ***
10940890-C-A ***
22634820-C-CT 20472934-C-CT 14×T***
10768596-A-G,T ***
10813056-T-C ***
11014530-T-A ***
13866339-GTAATCGAGTT-G 11745633-GTAATCGAGTT-G ***
16768601-C-CT 14656721-C-CT 17×T***
15669964-CA-C,CAA 13558084-CA-C,CAA 18×A***
10999887-T-A ***
11027038-G-T ***
10682690-C-A ***
10804725-G-A ***
3271601-CTT-C,CTTT 3403560-CTT-C,CTTT 14×T***
13463860-C-A 11308184-C-A ***
18616784-GTT-G 16504904-GTT-G 15×T***
15971761-GT-G 13859881-GT-G 11×T***
7990130-G-T 8122089-G-T ***
8151445-G-T 8283404-G-T ***
21905283-CAAAA-C,CAAA 19743397-CAAAA-C,CAAA 16×A***
8387743-C-T 8519702-C-T ***
16003836-C-A 13891956-C-A ***
56841846-T-A,G ***
13463090-G-A 11307414-G-A ***
10788593-C-A ***
10755396-CTGTTT-C,CTGTTC ***
13489501-C-A 11333825-C-A ***
10969886-T-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: N16476940378576497457554574
Used in age calculations940378576497457554574
Counts of SNPs32
Variant counts last updated 2018-06-30 15:49:47.


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