Hall

FTDNA: 151706, BigY2: 151706

Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > FGC3213 > ZZ1 > S3058 > S424 > LSC > LSC1 > LSC1a > ZZ23 > Y12464 > Z29551 > Z29556

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
151706		BigY2
151706		Manual
Edits
6221982-C-T 6353941-C-T IR3_Dst ***A*
24252295-G-T 22106148-G-T P3_b1 ***A*
6345765-C-T 6477724-C-T A5385 ++
11665260-GA-G **
14107552-C-A 11986846-C-A **
14080001-G-T 11959295-G-T **
14073220-G-A 11952514-G-A **
14067304-C-A 11946598-C-A **
13960506-G-A 11839800-G-A **
13932811-T-C 11812105-T-C **
13927481-C-A 11806775-C-A **
56876445-GAA-G **
11663091-T-G **
14160301-G-T 12039595-G-T **
13690251-A-G 11534575-A-G **
13633869-A-T 11478193-A-T **
13608748-G-T 11453072-G-T **
13579582-C-T 11423906-C-T **
13347926-A-C 11192250-A-C **
13327577-C-A 11171901-C-A **
13218763-T-A 11063087-T-A **
14158243-C-A 12037537-C-A **
14272471-C-G 12151765-C-G **
14176472-C-A 12055766-C-A **
14532058-T-C 12420259-T-C **
14986156-C-A 12874224-C-A **
14949082-A-G 12837156-A-G **
14765218-C-A 12653287-C-A **
14757809-T-C 12645878-T-C **
14599014-G-T 12487214-G-T **
14574669-C-A 12462869-C-A **
14558060-C-A 12446261-C-A **
14531208-A-T 12419409-A-T **
13205428-C-A 11049752-C-A **
14471813-C-A 12351082-C-A **
14458405-A-T 12337678-A-T **
14456158-C-A 12335431-C-A **
14430323-G-A 12309596-G-A **
14421580-G-T 12300855-G-T Y91391 **
14358410-GAAAA-G 12237705-GAAAA-G 14×A**
14300141-G-A 12179435-G-A **
13213933-G-A 11058257-G-A **
11030681-A-C **
13200379-C-A 11044703-C-A **
10949589-A-G **
10959074-T-C **
10949637-C-T **
10949625-C-T **
10949624-A-G **
10949615-T-C **
13488729-C-T 11333053-C-T **
10949598-C-A **
10949578-C-CCCTCT **
10968221-C-A **
10928816-C-A **
10913627-C-A **
10895863-T-G **
10883046-T-G **
10866567-A-C **
10866563-A-T **
10866551-G-T **
10968216-C-CTCCTA **
10968252-C-T **
15012570-C-T 12900658-C-T **
10978934-C-A **
11026746-C-A **
11021481-C-A **
11003797-C-A **
11000355-C-A **
10997484-T-C **
10996440-C-A **
10992240-C-A **
10977268-T-C **
10968261-T-C **
10977257-T-C **
10977239-A-C **
10977236-A-T **
10972674-T-C **
10968279-C-T **
10968272-T-G **
10968265-T-A **
15012560-G-A 12900648-G-A **
15171286-T-C 13059372-T-C **
15168086-C-A 13056172-C-A FGC66103 **
22730012-C-A 20568126-C-A **
23276571-G-T 21114685-G-T **
23199318-T-A 21037432-T-A **
23098040-C-A 20936154-C-A **
23004106-T-C 20842220-T-C **
22949958-A-T 20788072-A-T **
22869028-T-A 20707142-T-A **
22768293-C-A 20606407-C-A **
22614887-C-T 20453001-C-T **
23434222-TA-T 21272336-TA-T 9×A**
22537275-C-CA 20375389-C-CA 15×A**
22425345-C-A 20263459-C-A DYZ19 **
22309896-C-CAAGA 20148010-C-CAAGA DYZ19 **
22183059-T-C 20021173-T-C **
22040835-G-A 19878949-G-A **
21954497-T-C 19792611-T-C **
21912226-C-A 19750340-C-A **
23356581-C-A 21194695-C-A **
23440657-C-A 21278771-C-A **
21834243-C-A 19672357-C-A **
28478242-C-A 26332095-C-A **
56848078-G-T **
56763501-G-T **
28622247-A-G 26476100-A-G **
28613167-G-C 26467020-G-C **
28551151-C-A 26405004-C-A **
28494610-G-T 26348463-G-T **
28492416-T-C 26346269-T-C **
28460971-G-A 26314824-G-A **
23793407-C-A 21631521-C-A **
28091456-A-ACAG 25945309-A-ACAG P1_Y2 **
27461864-C-A 25315717-C-A P1_Y2 **
26061484-T-C 23915337-T-C P1_Y1 **
24513390-C-A 22367243-C-A **
24446794-G-T 22300647-G-T **
24369540-C-A 22223393-C-A **
24302817-A-AT 22156670-A-AT P3_t1 **
21840919-T-C 19679033-T-C **
21709158-A-AT 19547272-A-AT 10×T**
10866532-C-A **
16424548-T-C 14312668-T-C **
17399576-TA-T 15287696-TA-T **
17270437-C-A 15158557-C-A **
16827396-C-A 14715516-C-A **
16689779-A-G 14577899-A-G **
16677149-C-T 14565269-C-T **
16605516-C-A 14493636-C-A **
16503770-G-A 14391890-G-A **
16272050-T-G 14160170-T-G **
17713845-ATCT-A 15601965-ATCT-A **
16070657-T-C 13958777-T-C **
16045318-C-A 13933438-C-A **
15858005-C-A 13746125-C-A **
15767164-G-T 13655284-G-T **
15685224-G-T 13573344-G-T **
15398321-C-T 13286441-C-T **
15338850-C-A 13226968-C-A **
17490202-C-A 15378322-C-A **
17714028-A-G 15602148-A-G **
21700595-GAAAAAAA-G 19538709-GAAAAAAA-G 17×A**
19415529-C-T 17303649-C-T **
21495435-C-A 19333549-C-A **
21201833-C-A 19039947-C-A **
21182397-CTTT-C 19020511-CTTT-C 20×T**
21033556-A-T 18871670-A-T **
20352202-C-T 18190316-C-T P5_Dst **
19809863-T-TG 17697983-T-TG P5_Prx **
19416572-A-G 17304692-A-G **
19314705-G-A 17202825-G-A **
17997452-G-A 15885572-G-A P7_Gap **
19272121-C-A 17160241-C-A **
19250757-T-A 17138877-T-A **
19228916-C-G 17117036-C-G **
18989822-C-A 16877942-C-A **
18565327-A-G 16453447-A-G **
18412214-T-A 16300334-T-A P6_Gap **
18190617-C-A 16078737-C-A **
10866548-A-G **
10949599-G-T **
10859193-T-C **
5674695-C-A 5806654-C-A **
5949849-TA-T 6081808-TA-T **
5867392-G-T 5999351-G-T **
5824231-C-A 5956190-C-A **
5797060-G-A 5929019-G-A **
5756095-G-T 5888054-G-T **
5742731-A-G 5874690-A-G **
5443294-C-A 5575253-C-A **
6347810-G-T 6479769-G-T **
5420704-G-A 5552663-G-A **
5336697-T-TAA 5468656-T-TAA 12×A**
5200353-G-T 5332312-G-T **
4926244-G-T 5058203-G-T **
4869144-G-A 5001103-G-A **
4869130-G-T 5001089-G-T **
4748820-T-C 4880779-T-C **
6096409-G-T 6228368-G-T **
6446110-G-T 6578069-G-T **
4547729-T-A 4679688-T-A **
7160978-G-A 7292937-G-A **
7316597-G-A 7448556-G-A **
7304757-C-A 7436716-C-A **
7276837-A-G 7408796-A-G **
7241985-C-A 7373944-C-A **
7196472-C-T 7328431-C-T **
7195183-G-A 7327142-G-A **
7165303-T-G 7297262-T-G **
7156936-T-C 7288895-T-C **
6491353-C-A 6623312-C-A **
7094380-T-C 7226339-T-C **
7001658-CT-C 7133617-CT-C 11×T**
6770250-GA-G 6902209-GA-G **
10852078-G-C **
6645531-G-A 6777490-G-A **
6593494-A-T 6725453-A-T **
6514246-GC-G 6646205-GC-G **
4626300-C-A 4758259-C-A **
4521878-C-A 4653837-C-A **
7316611-G-A 7448570-G-A **
16842867-A-ATG 14730987-A-ATG 22×TG**
13347887-G-A 11192211-G-A **
15865549-C-CT 13753669-C-CT 22×T**
13461038-C-G 11305362-C-G **
13139553-T-C 10629039-T-C **
4230145-A-G 4362104-A-G **
7383846-T-C 7515805-T-C **
13588226-T-A 11432550-T-A **
10686091-G-T **
13347930-CAT-C 11192254-CAT-C **
13347924-A-G 11192248-A-G **
14052814-T-A 11932108-T-A Y818 **
28581630-GATATATAT-G 26435483-GATATATAT-G 19×AT**
15012591-C-T 12900679-C-T **
13320727-C-A 11165051-C-A **
13139638-T-C 10629124-T-C **
13347908-CAA-C 11192232-CAA-C **
16904660-TC-T 14792780-TC-T **
4521612-TAAAAA-T 4653571-TAAAAA-T 17×A**
3706722-A-G 3838681-A-G **
4308279-A-G 4440238-A-G **
4302286-C-T 4434245-C-T **
4241818-C-T 4373777-C-T **
4129750-C-T 4261709-C-T **
4070781-C-A 4202740-C-A **
3965646-C-A 4097605-C-A **
3955547-C-A 4087506-C-A **
3491652-G-T 3623611-G-T **
14458406-T-C 12337679-T-C **
3396726-C-A 3528685-C-A **
3367088-C-A 3499047-C-A **
3301380-G-T 3433339-G-T **
3178867-C-A 3310826-C-A **
2785320-T-C 2917279-T-C **
2758840-C-T 2890799-C-T **
2689617-C-A 2821576-C-A **
7316603-T-C 7448562-T-C **
6730235-T-C 6862194-T-C **
7316614-G-A 7448573-G-A **
10629135-T-C **
10629034-T-G **
10629044-T-C **
10629052-C-T **
10629054-T-G **
10750895-G-A **
10629072-C-T **
10629074-C-G **
10629082-CAA-C **
10785671-C-A **
10629088-A-ACAT **
10629091-CT-C **
10629125-T-C **
7316615-C-A 7448574-C-A **
9964218-A-T 10126609-A-T **
10766719-C-A **
10764685-C-A **
10651473-C-A **
10660472-C-CCATTG **
10757105-C-A **
10660484-A-T **
10661920-A-G **
10666348-C-A **
10668876-C-A **
10755327-C-A **
10687013-G-T **
10690818-G-T **
10693348-C-A **
9965509-G-T 10127900-G-T **
10629061-C-T **
10796802-T-C **
8694289-C-A 8826248-C-A **
7329423-C-A 7461382-C-A **
7363176-T-A 7495135-T-A **
7384597-T-C 7516556-T-C **
10840333-C-A **
7670719-C-T 7802678-C-T **
7721415-C-A 7853374-C-A **
7869309-C-A 8001268-C-A **
7986079-GA-G 8118038-GA-G 8×A**
10805996-CA-C **
8230458-C-A 8362417-C-A **
8353288-C-A 8485247-C-A **
8379547-C-A 8511506-C-A **
8389660-C-T 8521619-C-T **
8389705-A-G 8521664-A-G **
10749580-G-T **
9163047-C-A 9325438-C-A **
10796816-C-G **
8776689-C-A 8908648-C-A **
8854096-AC-A 8986055-AC-A **
8913546-C-T 9045505-C-T **
9108758-G-T **
10772448-T-G ***
56835503-A-C,T ***
10754983-A-T ***
21094738-G-GA 18932852-G-GA 10×A***
28633534-C-A 26487387-C-A ***
22010480-G-A 19848594-G-A ***
10754988-A-G ***
28635707-C-A 26489560-C-A ***
56835505-C-CCAATT ***
28798834-C-A 26652687-C-A ***
13809661-A-G 11688955-A-G ***
56834942-C-A ***
10772453-T-A ***
14926462-CA-C 12814527-CA-C 26×A***
10772422-A-C ***
10796788-G-A ***
24508205-CTTT-C,CTT 22362058-CTTT-C,CTT 22×T***
13140537-C-A 10630023-C-A ***
24672590-ATT-A 22526443-ATT-A P3_b2 9×T***
28796369-C-CCATGG 26650222-C-CCATGG ***
10796787-T-C ***
28805769-A-AATGCC 26659622-A-AATGCC ***
10772440-C-T ***
4302064-A-G 4434023-A-G ***
10964286-G-T ***
18752943-T-C 16641063-T-C F22866 ***
7562059-C-A 7694018-C-A ***
7645953-C-A 7777912-C-A ***
14771126-CTTTTT-C 12659195-CTTTTT-C 16×T***
14910798-AT-A,ATT 12798865-AT-A,ATT 21×T***
14143123-C-A 12022417-C-A ***
15780033-C-A 13668153-C-A ***
16354413-C-A 14242533-C-A ***
6124187-C-A 6256146-C-A ***
9870282-G-A 10032673-G-A ***
5871862-T-A 6003821-T-A ***
9945868-A-AG 10108259-A-AG ***
17204151-C-A 15092271-C-A ***
18143936-T-A 16032056-T-A ***
18569842-T-A 16457962-T-A ***
18872156-TTTTCTTTCTTTC-T,TTTTC 16760276-TTTTCTTTCTTTC-T,TTTTC 16×TTTC***
22829644-CAAAA-C 20667758-CAAAA-C 18×A***
10991237-T-A ***
2774663-CTT-C,CT 2906622-CTT-C,CT 18×T***
3116256-C-A 3248215-C-A ***
22490517-C-T 20328631-C-T DYZ19 ***
10682552-C-CAGTAA ***
3834942-G-A 3966901-G-A ***
10654529-C-A ***
10991238-T-A ***
11000453-C-T ***
4244643-G-A 4376602-G-A ***
10991245-C-T ***
10991249-C-CCGAAA ***
19436722-AAGAAAGAAAGAAAGAA-A,AAGAAAGAAAGAAAGAG 17324842-AAGAAAGAAAGAAAGAA-A,AAGAAAGAAAGAAAGAG ***
11000450-T-C ***
11000451-T-A ***
21461373-TAC-T 19299487-TAC-T 9×AC***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit POSITION-REF-ALT (hg19) POSITION-REF-ALT (hg38) Note
Manual18382652-T-A16270772-T-A4 reads show the T to A mutation. One of the 4 reads has a deletion of an A in the preceding A homopolymer.
Manual22323215-T-A20161329-T-A11 reads, all A.
Manual5188687-C-G5320646-C-GJust one read, a G.
Manual14611351-AG-A12499557-AG-A43 reads cover the region and all but one show the deletion.
Manual13136739-C-T10626225-C-TThere are a large number of reads that don't belong here. Of the 39 that do, we have 36T 3C.

Haplotype Progression

The data below reveals the progression of changes in the haplotype. The bottom row is the haplotype for this man and above him are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are very much a work in progress, and any suggested modifications are appreciated. I think we can use our vast collection of haplotype data to refine these haplotypes. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.

DYS393
DYS390
DYS19
DYS391
DYS385
DYS426
DYS388
DYS439
DYS389i
DYS392
DYS389ii
DYS458
DYS459
DYS455
DYS454
DYS447
DYS437
DYS448
DYS449
DYS464
DYS460
Y-GATA-H4
YCAII
DYS456
DYS607
DYS576
DYS570
CDY
DYS442
DYS438
DYS531
DYS578
DYF395S1
DYS590
DYS537
DYS641
DYS472
DYF406S1
DYS511
DYS425
DYS413
DYS557
DYS594
DYS436
DYS490
DYS534
DYS450
DYS444
DYS481
DYS520
DYS446
DYS617
DYS568
DYS487
DYS572
DYS640
DYS492
DYS565
DYS710
DYS485
DYS632
DYS495
DYS540
DYS714
DYS716
DYS717
DYS505
DYS556
DYS549
DYS589
DYS522
DYS494
DYS533
DYS636
DYS575
DYS638
DYS462
DYS452
DYS445
Y-GATA-A10
DYS463
DYS441
Y-GGAAT-1B07
DYS525
DYS712
DYS593
DYS650
DYS532
DYS715
DYS504
DYS513
DYS561
DYS552
DYS726
DYS635
DYS587
DYS643
DYS497
DYS510
DYS434
DYS461
DYS435
P312/S1161324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123315916122626191211131210912121011113012132413101020151913241712152412231810141791211
L21/S1451324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123515916122526191211131211912121011113012132413101020151913241712152412231810141791211
DF21/S1921324141111-14121212131329179-1011112515192915-15-17-17111119-231615181836-38121211915-1681010810101223-231610121215812222013121113111112123515916122526191211131211912121011113012132413101020151913241712152412231810141791211
S30581324141011-14121212131329179-1011112515192915-15-17-17111119-231615181836-38121211915-1681010810101223-231610121215812222013121113111112123515916122526191211121211912121011113012132413101020151913241712152412231810141791211
LSC1324141011-14121212131329179-1011112515193015-15-17-17111019-231615181838-38121211915-1691010810101222-231610121215811222014121113111112123115915122526191311121211912121011113012132413101020151913231712152412231810141791211
LSC11324141011-14121212131329179-1011112515193013-15-17-17111019-231615181838-38121211915-1691010810101222-231610121215811222014121113111112123115915122526201311121211912121011113012132413101020151913231712152412231810141791211
LSC1a1324141011-14121212131329189-1011112515193013-15-17-17111019-231615181838-38121211915-1691010810101222-231610121215811222014121113111112123115915122526201311121211912121011113012132413101020151913231712152412231810141791211
ZZ231324141011-14121212131329189-1011112515193013-15-17-17111019-231615181838-38121211915-1691010810101222-231610121215811222014121113111112123115915122526201311131211913121011113012132413101020151913231712152412231810141791211
Y124641324141011-14121212131329189-1011112515193013-15-17-17111019-231615181838-38121211915-1691010810101222-231610121215811222014121113111112123115915122526201311131211913121011113012132413101020151913231712152412231810141791211
Z295511324141011-14121212131329179-911112515193013-15-17-18111019-231615181837-39121211915-1691010810101222-231610121215811222014121113111112123115915122526201311131211913121011113012132413101020151714231712152412231810141791211
Hall1324141011-14121212131329179-911112515193013-15-17-18111019-231515181835-39121211915-1691010810101222-231610121214811222014121113111112123215915122526201311131211913121011113012132413101020151714231712152412231810141791211

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 1517061070583677557097831672
Kit: 151706971545979094697800280
Used in age calculations1070583679094697831672
Counts of SNPs00
Variant counts last updated 2018-06-18 21:08:56.


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