Cook
BigY2: 365MDKA Birth:

Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 365 |
---|---|---|---|---|---|---|---|---|
22289783-T-G | 20127897-T-G | DYZ19 | A* | |||||
22312987-C-A | 20151101-C-A | DYZ19 | A* | |||||
28745309-G-A | 26599162-G-A | BY150979 | Y | + | ||||
8573727-T-TCA | 8705686-T-TCA | BY41583 | 10×CA | * | ||||
16583363-C-T | 14471483-C-T | PR5871 | ** | |||||
14473752-AG-A | 12353021-AG-A | ** | ||||||
15076207-A-T | 12964297-A-T | ** | ||||||
23435201-TC-T | 21273315-TC-T | ** | ||||||
18933726-C-A | 16821846-C-A | ** | ||||||
58991306-G-T | 56845159-G-T | ** | ||||||
16278498-C-A | 14166618-C-A | ** | ||||||
18019832-CTTTTTT-C | 15907952-CTTTTTT-C | 22×T | ** | |||||
7990806-C-A | 8122765-C-A | ** | ||||||
7106395-T-C | 7238354-T-C | ** | ||||||
10887521-G-A | ** | |||||||
7317185-C-A | 7449144-C-A | ** | ||||||
28484913-C-A | 26338766-C-A | ** | ||||||
15477290-T-A | 13365410-T-A | ** | ||||||
17960995-C-T | 15849115-C-T | ** | ||||||
23609996-C-A | 21448110-C-A | ** | ||||||
17470881-C-A | 15359001-C-A | ** | ||||||
11005459-A-C | ** | |||||||
10795020-A-G | ** | |||||||
10795023-A-T | ** | |||||||
10795028-G-A | ** | |||||||
10795030-A-C | ** | |||||||
7195214-T-G | 7327173-T-G | ** | ||||||
28033129-CAAAA-C | 25886982-CAAAA-C | P1_Y2 | 17×A | ** | ||||
17883764-C-A | 15771884-C-A | FT54267 | ** | |||||
10845766-A-G | ** | |||||||
5698837-G-T | 5830796-G-T | ** | ||||||
10793135-A-C | ** | |||||||
14529215-C-A | 12417416-C-A | ** | ||||||
17462106-C-A | 15350226-C-A | ** | ||||||
27232194-C-T | 25086047-C-T | P1_g3 | ** | |||||
24728108-C-A | 22581961-C-A | P3_b2 | ** | |||||
24447041-C-A | 22300894-C-A | ** | ||||||
15355074-C-A | 13243193-C-A | ** | ||||||
25556098-A-T | 23409951-A-T | P1_gr1 | ** | |||||
22816351-A-G | 20654465-A-G | ** | ||||||
27570847-A-T | 25424700-A-T | P1_Y2 | ** | |||||
19563159-C-A | 17451279-C-A | ** | ||||||
11031725-C-A | ** | |||||||
19125247-C-A | 17013367-C-A | ** | ||||||
7190614-C-A | 7322573-C-A | ** | ||||||
28531978-C-A | 26385831-C-A | ** | ||||||
17355510-G-GAA | 15243630-G-GAA | 12×A | ** | |||||
26563229-C-A | 24417082-C-A | P1_g2 | ** | |||||
7009178-G-T | 7141137-G-T | ** | ||||||
14390049-C-A | 12269345-C-A | ** | ||||||
6293380-T-G | 6425339-T-G | IR3_Dst | ** | |||||
15423473-TCA-T | 13311593-TCA-T | ** | ||||||
21884451-C-A | 19722565-C-A | ** | ||||||
16905849-T-G | 14793969-T-G | ** | ||||||
21302449-C-A | 19140563-C-A | ** | ||||||
13703434-T-A | 11547758-T-A | ** | ||||||
28591708-C-A | 26445561-C-A | ** | ||||||
15012314-G-TT | 12900402-G-TT | ** | ||||||
13934817-C-A | 11814111-C-A | ** | ||||||
13858041-G-T | 11737335-G-T | ** | ||||||
23545031-T-G | 21383145-T-G | ** | ||||||
56838539-T-C | ** | |||||||
8907614-C-A | 9039573-C-A | ** | ||||||
14557571-G-T | 12445772-G-T | ** | ||||||
16779007-GA-G | 14667127-GA-G | 10×A | ** | |||||
3866026-C-A | 3997985-C-A | ** | ||||||
14527736-C-A | 12415937-C-A | ** | ||||||
10859684-C-A | ** | |||||||
19677913-C-CA | 17566033-C-CA | P5_Prx | ** | |||||
21623840-AG-A | 19461954-AG-A | ** | ||||||
27714357-G-C | 25568210-G-C | P1_Y2 | ** | |||||
9735677-G-T | 9898068-G-T | IR3_Prx | ** | |||||
8269656-C-A | 8401615-C-A | ** | ||||||
23818041-C-A | 21656155-C-A | ** | ||||||
10655134-C-A | ** | |||||||
17355598-C-A | 15243718-C-A | ** | ||||||
3697031-G-T | 3828990-G-T | ** | ||||||
23277398-C-A | 21115512-C-A | ** | ||||||
18256193-T-C | 16144313-T-C | ** | ||||||
20434751-C-A | 18272865-C-A | P5_Dst | ** | |||||
13617970-C-A | 11462294-C-A | ** | ||||||
18255887-GT-G | 16144007-GT-G | ** | ||||||
16905869-T-C | 14793989-T-C | ** | ||||||
10779003-C-A | ** | |||||||
27714369-A-C | 25568222-A-C | P1_Y2 | ** | |||||
4902119-C-A | 5034078-C-A | ** | ||||||
20641661-T-A | 18479775-T-A | P4_Prx | ** | |||||
10896254-G-T | ** | |||||||
10828237-C-A | ** | |||||||
6330117-A-AC | 6462076-A-AC | IR3_Dst | ** | |||||
16295673-C-A | 14183793-C-A | ** | ||||||
22165138-C-A | 20003252-C-A | ** | ||||||
5796680-C-A | 5928639-C-A | ** | ||||||
4226171-G-T | 4358130-G-T | ** | ||||||
19183892-A-T | 17072012-A-T | ** | ||||||
18688254-C-A | 16576374-C-A | ** | ||||||
5220547-C-A | 5352506-C-A | ** | ||||||
23412627-C-A | 21250741-C-A | ** | ||||||
23898947-T-TC | 21737061-T-TC | ** | ||||||
16648173-C-A | 14536293-C-A | ** | ||||||
24875581-C-A | 22729434-C-A | g1 | ** | |||||
6179629-C-T | 6311588-C-T | IR3_Dst | ** | |||||
5204588-C-A | 5336547-C-A | ** | ||||||
17191644-C-A | 15079764-C-A | ** | ||||||
4100781-C-A | 4232740-C-A | ** | ||||||
56845173-G-T | ** | |||||||
6756946-T-A | 6888905-T-A | ** | ||||||
22739543-C-A | 20577657-C-A | ** | ||||||
10773410-C-A | ** | |||||||
10664750-C-A | ** | |||||||
5688385-C-A | 5820344-C-A | ** | ||||||
14191248-C-A | 12070542-C-A | ** | ||||||
10667031-T-G | ** | |||||||
15435181-T-C | 13323301-T-C | ** | ||||||
15435182-G-A | 13323302-G-A | ** | ||||||
8052518-C-A | 8184477-C-A | ** | ||||||
13351051-C-A | 11195375-C-A | ** | ||||||
15076202-A-T | 12964292-A-T | ** | ||||||
21953616-C-A | 19791730-C-A | ** | ||||||
2928310-C-A | 3060269-C-A | ** | ||||||
9013255-C-A | 9175646-C-A | ** | ||||||
18256283-G-A | 16144403-G-A | ** | ||||||
3706729-A-T | 3838688-A-T | ** | ||||||
9942091-C-A | 10104482-C-A | ** | ||||||
18035710-C-T | 15923830-C-T | ** | ||||||
8295530-C-A | 8427489-C-A | ** | ||||||
19337676-C-T | 17225796-C-T | ** | ||||||
10687509-C-A | ** | |||||||
14561812-C-A | 12450013-C-A | ** | ||||||
16277923-C-A | 14166043-C-A | ** | ||||||
26538901-C-T | 24392754-C-T | P1_g2 | ** | |||||
2862892-CAAAAAA-C | 2994851-CAAAAAA-C | 18×A | ** | |||||
15422068-C-A | 13310188-C-A | ** | ||||||
17633684-TAC-T | 15521804-TAC-T | ** | ||||||
16829397-C-A | 14717517-C-A | ** | ||||||
6953286-C-A | 7085245-C-A | ** | ||||||
18816877-C-A | 16704997-C-A | ** | ||||||
16354244-C-A | 14242364-C-A | ** | ||||||
14430343-A-G | 12309616-A-G | ** | ||||||
15928398-GC-T | 13816518-GC-T | ** | ||||||
15161044-C-A | 13049130-C-A | ** | ||||||
11009950-C-A | ** | |||||||
7759219-G-T | 7891178-G-T | ** | ||||||
21489204-C-A | 19327318-C-A | ** | ||||||
16905857-C-G | 14793977-C-G | ** | ||||||
16424481-A-G | 14312601-A-G | ** | ||||||
9075389-C-A | 9237780-C-A | ** | ||||||
16216838-C-A | 14104958-C-A | ** | ||||||
10796749-C-A | ** | |||||||
14200622-C-A | 12079916-C-A | ** | ||||||
27952091-GTATATATATATATATATATA-G | 25805944-GTATATATATATATATATATA-G | P1_Y2 | 19×TA | ** | ||||
14473769-C-A | 12353038-C-A | ** | ||||||
3835076-C-A | 3967035-C-A | ** | ||||||
9824024-C-A | 9986415-C-A | ** | ||||||
10807945-C-A | ** | |||||||
13200453-C-A | 11044777-C-A | ** | ||||||
14278366-C-A | 12157660-C-A | ** | ||||||
22914489-C-A | 20752603-C-A | ** | ||||||
3093443-C-A | 3225402-C-A | ** | ||||||
24472515-G-A | 22326368-G-A | FGC51299 | ** | |||||
15179198-T-A | 13067284-T-A | ** | ||||||
9307428-G-T | 9469819-G-T | ** | ||||||
19391237-G-T | 17279357-G-T | ** | ||||||
19044332-C-A | 16932452-C-A | ** | ||||||
2696441-C-A | 2828400-C-A | ** | ||||||
2696557-C-A | 2828516-C-A | ** | ||||||
2721959-C-A | 2853918-C-A | ** | ||||||
2747778-TATAA-T | 2879737-TATAA-T | ** | ||||||
2853654-G-A | 2985613-G-A | ** | ||||||
3289974-G-T | 3421933-G-T | ** | ||||||
3345756-T-C | 3477715-T-C | ** | ||||||
3467237-C-A | 3599196-C-A | ** | ||||||
3716911-C-A | 3848870-C-A | ** | ||||||
3785302-C-A | 3917261-C-A | ** | ||||||
4114673-T-A | 4246632-T-A | ** | ||||||
4123900-A-G | 4255859-A-G | ** | ||||||
4338679-C-A | 4470638-C-A | ** | ||||||
4338755-C-A | 4470714-C-A | ** | ||||||
4563260-A-T | 4695219-A-T | ** | ||||||
4709912-C-A | 4841871-C-A | ** | ||||||
4757337-T-C | 4889296-T-C | ** | ||||||
4840181-C-T | 4972140-C-T | ** | ||||||
4889442-G-C | 5021401-G-C | ** | ||||||
4899618-G-T | 5031577-G-T | ** | ||||||
5291635-C-A | 5423594-C-A | ** | ||||||
5350539-G-T | 5482498-G-T | ** | ||||||
5669322-G-C | 5801281-G-C | ** | ||||||
5864023-C-A | 5995982-C-A | ** | ||||||
5886164-A-C | 6018123-A-C | ** | ||||||
5990252-A-G | 6122211-A-G | ** | ||||||
6123317-C-A | 6255276-C-A | ** | ||||||
6293364-TTTTG-T | 6425323-TTTTG-T | IR3_Dst | ** | |||||
6295397-T-A | 6427356-T-A | IR3_Dst | ** | |||||
6359652-A-C | 6491611-A-C | ** | ||||||
6441348-C-A | 6573307-C-A | ** | ||||||
6459108-G-T | 6591067-G-T | ** | ||||||
6631752-C-A | 6763711-C-A | ** | ||||||
6645457-C-G | 6777416-C-G | ** | ||||||
6652602-C-A | 6784561-C-A | ** | ||||||
6756944-T-A | 6888903-T-A | ** | ||||||
6759193-T-G | 6891152-T-G | ** | ||||||
6778960-C-A | 6910919-C-A | ** | ||||||
6855501-C-A | 6987460-C-A | ** | ||||||
6888546-G-T | 7020505-G-T | ** | ||||||
6888584-G-A | 7020543-G-A | ** | ||||||
6901251-A-G | 7033210-A-G | ** | ||||||
6981412-A-T | 7113371-A-T | ** | ||||||
6983795-C-G | 7115754-C-G | ** | ||||||
7123671-T-A | 7255630-T-A | ** | ||||||
7299651-G-T | 7431610-G-T | ** | ||||||
7311162-T-G | 7443121-T-G | ** | ||||||
7418687-G-A | 7550646-G-A | FT273472 | ** | |||||
7462618-G-A | 7594577-G-A | IR1_L | ** | |||||
7524648-C-G | 7656607-C-G | ** | ||||||
7590475-G-T | 7722434-G-T | ** | ||||||
7775063-G-A | 7907022-G-A | ** | ||||||
7886549-C-A | 8018508-C-A | ** | ||||||
7923607-A-G | 8055566-A-G | ** | ||||||
7938161-G-A | 8070120-G-A | 15×A | ** | |||||
8431194-C-A | 8563153-C-A | ** | ||||||
8672901-A-G | 8804860-A-G | ** | ||||||
8720084-G-A | 8852043-G-A | ** | ||||||
9110434-G-C | ** | |||||||
9356929-C-A | 9519320-C-A | ** | ||||||
9441590-C-T | 9603981-C-T | ** | ||||||
9456553-C-A | 9618944-C-A | ** | ||||||
9499494-A-C | 9661885-A-C | ** | ||||||
9502547-G-C | 9664938-G-C | ** | ||||||
9907455-C-T | 10069846-C-T | ** | ||||||
9966110-C-A | 10128501-C-A | ** | ||||||
10652123-A-C | ** | |||||||
10655782-C-T | ** | |||||||
10686291-C-T | ** | |||||||
10778869-G-C | ** | |||||||
10789185-C-A | ** | |||||||
10794580-T-C | ** | |||||||
10796771-C-A | ** | |||||||
10800925-C-A | ** | |||||||
10816677-T-C | ** | |||||||
10835622-C-A | ** | |||||||
10844095-G-C | ** | |||||||
10844120-T-C | ** | |||||||
10846811-C-T | ** | |||||||
10859671-A-G | ** | |||||||
10859808-C-T | ** | |||||||
10860871-C-A | ** | |||||||
10863645-C-A | ** | |||||||
10863663-T-A | ** | |||||||
10878039-C-A | ** | |||||||
10888912-C-A | ** | |||||||
10894752-T-A | ** | |||||||
10911023-G-T | ** | |||||||
10916487-C-A | ** | |||||||
10918727-C-A | ** | |||||||
10921808-C-CATTGA | ** | |||||||
10921895-C-T | ** | |||||||
10924325-T-TCCACA | ** | |||||||
10925450-G-T | ** | |||||||
10926820-C-T | ** | |||||||
10929065-C-A | ** | |||||||
10933893-A-G | ** | |||||||
10939603-A-C | ** | |||||||
10952343-T-A | ** | |||||||
10957862-C-T | ** | |||||||
10958473-C-A | ** | |||||||
10997901-C-A | ** | |||||||
11010038-C-A | ** | |||||||
11019731-C-A | ** | |||||||
11021727-G-T | ** | |||||||
13484565-C-A | 11328889-C-A | ** | ||||||
13601965-A-T | 11446289-A-T | ** | ||||||
11659735-TG-T | ** | |||||||
11665573-T-A | ** | |||||||
11676328-A-T | ** | |||||||
13818073-T-A | 11697367-T-A | ** | ||||||
13870390-G-C | 11749684-G-C | ** | ||||||
13871307-A-C | 11750601-A-C | ** | ||||||
14079719-T-A | 11959013-T-A | ** | ||||||
14180629-C-A | 12059923-C-A | ** | ||||||
14224418-C-A | 12103712-C-A | ** | ||||||
14363455-G-T | 12242750-G-T | ** | ||||||
14398434-C-A | 12277730-C-A | ** | ||||||
14502697-A-G | 12390902-A-G | ** | ||||||
14509959-T-A | 12398164-T-A | ** | ||||||
14514328-G-T | 12402533-G-T | ** | ||||||
14516825-C-A | 12405026-C-A | ** | ||||||
14580810-C-A | 12469010-C-A | Y91737 | ** | |||||
14658361-C-A | 12546426-C-A | ** | ||||||
14704258-T-A | 12592324-T-A | ** | ||||||
14711957-C-A | 12600024-C-A | ** | ||||||
14722527-A-G | 12610595-A-G | ** | ||||||
14724635-G-T | 12612703-G-T | ** | ||||||
14743442-C-T | 12631511-C-T | ** | ||||||
14764972-C-T | 12653041-C-T | ** | ||||||
14795808-G-T | 12683879-G-T | ** | ||||||
14867131-G-T | 12755201-G-T | ** | ||||||
14912872-T-C | 12800939-T-C | ** | ||||||
14986296-C-A | 12874364-C-A | ** | ||||||
14989030-G-A | 12877096-G-A | ** | ||||||
15060811-A-C | 12948903-A-C | ** | ||||||
15076198-G-T | 12964288-G-T | ** | ||||||
15094002-A-G | 12982090-A-G | ** | ||||||
15215936-A-G | 13104022-A-G | ** | ||||||
15422064-C-A | 13310184-C-A | ** | ||||||
15435224-T-C | 13323344-T-C | ** | ||||||
15468392-A-T | 13356512-A-T | ** | ||||||
15468423-A-C | 13356543-A-C | ** | ||||||
15468643-C-A | 13356763-C-A | ** | ||||||
15491929-G-T | 13380049-G-T | ** | ||||||
15491931-G-T | 13380051-G-T | ** | ||||||
15577035-A-T | 13465155-A-T | ** | ||||||
15665634-A-G | 13553754-A-G | ** | ||||||
15685056-T-C | 13573176-T-C | ** | ||||||
15688462-A-G | 13576582-A-G | ** | ||||||
15773476-C-A | 13661596-C-A | ** | ||||||
15773550-C-T | 13661670-C-T | ** | ||||||
15941548-C-A | 13829668-C-A | ** | ||||||
16030011-C-T | 13918131-C-T | ** | ||||||
16038121-T-G | 13926241-T-G | ** | ||||||
16042798-C-A | 13930918-C-A | ** | ||||||
16056231-C-A | 13944351-C-A | ** | ||||||
16085757-C-A | 13973877-C-A | ** | ||||||
16278979-C-A | 14167099-C-A | ** | ||||||
16308153-ATGTG-A | 14196273-ATGTG-A | ** | ||||||
16354208-A-G | 14242328-A-G | ** | ||||||
16406905-A-G | 14295025-A-G | ** | ||||||
16451831-C-A | 14339951-C-A | ** | ||||||
16490894-T-C | 14379014-T-C | ** | ||||||
16514476-C-A | 14402596-C-A | ** | ||||||
16621419-C-G | 14509539-C-G | ** | ||||||
16631551-C-A | 14519671-C-A | ** | ||||||
16648185-G-T | 14536305-G-T | ** | ||||||
16710135-T-A | 14598255-T-A | ** | ||||||
16783338-G-C | 14671458-G-C | ** | ||||||
16823930-G-T | 14712050-G-T | ** | ||||||
16823942-G-A | 14712062-G-A | ** | ||||||
16823952-T-A | 14712072-T-A | 17×A | ** | |||||
16944557-G-A | 14832677-G-A | ** | ||||||
16989257-A-G | 14877377-A-G | ** | ||||||
17030980-G-A | 14919100-G-A | ** | ||||||
17048055-A-C | 14936175-A-C | ** | ||||||
17152862-A-G | 15040982-A-G | ** | ||||||
17246877-C-A | 15134997-C-A | ** | ||||||
17297119-G-C | 15185239-G-C | ** | ||||||
17306255-T-C | 15194375-T-C | ** | ||||||
17385302-G-A | 15273422-G-A | ** | ||||||
17402593-C-A | 15290713-C-A | ** | ||||||
17482917-C-A | 15371037-C-A | ** | ||||||
17482919-G-A | 15371039-G-A | ** | ||||||
17482920-T-G | 15371040-T-G | ** | ||||||
17482924-C-A | 15371044-C-A | ** | ||||||
17489711-G-A | 15377831-G-A | ** | ||||||
17626550-C-A | 15514670-C-A | ** | ||||||
17722461-C-A | 15610581-C-A | ** | ||||||
17728778-G-C | 15616898-G-C | ** | ||||||
17735429-A-G | 15623549-A-G | ** | ||||||
17752148-G-C | 15640268-G-C | ** | ||||||
17879473-A-G | 15767593-A-G | ** | ||||||
17951678-A-G | 15839798-A-G | ** | ||||||
18035722-G-C | 15923842-G-C | ** | ||||||
18040340-T-C | 15928460-T-C | ** | ||||||
18108606-C-A | 15996726-C-A | ** | ||||||
18150538-C-A | 16038658-C-A | ** | ||||||
18233396-G-T | 16121516-G-T | ** | ||||||
18569602-C-A | 16457722-C-A | ** | ||||||
18584018-A-T | 16472138-A-T | ** | ||||||
18593458-T-A | 16481578-T-A | ** | ||||||
18645842-G-T | 16533962-G-T | ** | ||||||
18687754-T-A | 16575874-T-A | ** | ||||||
18748734-G-T | 16636854-G-T | ** | ||||||
18844014-G-C | 16732134-G-C | ** | ||||||
18880158-C-A | 16768278-C-A | ** | ||||||
18906220-C-A | 16794340-C-A | ** | ||||||
18915304-T-C | 16803424-T-C | ** | ||||||
18949705-A-G | 16837825-A-G | ** | ||||||
19042558-C-A | 16930678-C-A | ** | ||||||
19125181-C-A | 17013301-C-A | ** | ||||||
19298801-C-G | 17186921-C-G | ** | ||||||
19302009-G-T | 17190129-G-T | ** | ||||||
19337679-A-C | 17225799-A-C | ** | ||||||
19358689-C-A | 17246809-C-A | ** | ||||||
19377098-G-A | 17265218-G-A | ** | ||||||
19391215-G-T | 17279335-G-T | ** | ||||||
19433208-G-A | 17321328-G-A | ** | ||||||
19446046-C-A | 17334166-C-A | ** | ||||||
19522573-T-A | 17410693-T-A | ** | ||||||
19527828-C-A | 17415948-C-A | ** | ||||||
19792998-T-TG | 17681118-T-TG | P5_Prx | ** | |||||
19847693-CT-C | 17735813-CT-C | P5_Prx | ** | |||||
20032111-A-AC | 17920231-A-AC | P5_Prx | ** | |||||
20101810-C-A | 17989930-C-A | P5_Dst | ** | |||||
20306010-G-T | 18144124-G-T | P5_Dst | ** | |||||
20631082-A-T | 18469196-A-T | P4_Prx | ** | |||||
20631103-G-C | 18469217-G-C | P4_Prx | ** | |||||
20631138-G-T | 18469252-G-T | P4_Prx | ** | |||||
20840258-C-A | 18678372-C-A | P4_Gap | ** | |||||
21111734-A-C | 18949848-A-C | ** | ||||||
21116023-C-T | 18954137-C-T | ** | ||||||
21118468-A-G | 18956582-A-G | ** | ||||||
21130647-A-G | 18968761-A-G | ** | ||||||
21146322-A-C | 18984436-A-C | ** | ||||||
21146328-G-A | 18984442-G-A | FT118881 | ** | |||||
21146344-C-T | 18984458-C-T | ** | ||||||
21146345-A-G | 18984459-A-G | ** | ||||||
21146350-T-C | 18984464-T-C | ** | ||||||
21146352-A-G | 18984466-A-G | ** | ||||||
21177374-C-A | 19015488-C-A | ** | ||||||
21187334-C-A | 19025448-C-A | ** | ||||||
21238633-C-A | 19076747-C-A | ** | ||||||
21240653-C-A | 19078767-C-A | ** | ||||||
21275613-C-A | 19113727-C-A | ** | ||||||
21379831-C-A | 19217945-C-A | ** | ||||||
21839992-A-T | 19678106-A-T | ** | ||||||
21856761-CCTGG-C | 19694875-CCTGG-C | ** | ||||||
21890969-G-A | 19729083-G-A | ** | ||||||
21993983-C-T | 19832097-C-T | ** | ||||||
22011611-T-C | 19849725-T-C | ** | ||||||
22166782-C-A | 20004896-C-A | ** | ||||||
22173696-A-G | 20011810-A-G | ** | ||||||
22215326-C-A | 20053440-C-A | ** | ||||||
22436796-G-T | 20274910-G-T | DYZ19 | ** | |||||
22739550-C-T | 20577664-C-T | ** | ||||||
22739551-TA-T | 20577665-TA-T | ** | ||||||
22776880-A-G | 20614994-A-G | FT257773 | ** | |||||
22787266-T-C | 20625380-T-C | ** | ||||||
22867244-A-G | 20705358-A-G | ** | ||||||
22893258-G-T | 20731372-G-T | ** | ||||||
23062295-G-A | 20900409-G-A | ** | ||||||
23188601-G-T | 21026715-G-T | ** | ||||||
23190093-G-T | 21028207-G-T | ** | ||||||
23373614-T-A | 21211728-T-A | ** | ||||||
23434140-C-A | 21272254-C-A | ** | ||||||
23493456-G-A | 21331570-G-A | FT284893 | ** | |||||
23808674-C-A | 21646788-C-A | ** | ||||||
23810678-C-A | 21648792-C-A | ** | ||||||
23825226-C-G | 21663340-C-G | ** | ||||||
23837641-T-C | 21675755-T-C | ** | ||||||
23837685-G-A | 21675799-G-A | ** | ||||||
23983364-A-G | 21837217-A-G | FT142716 | ** | |||||
24422073-C-A | 22275926-C-A | ** | ||||||
25056909-C-A | 22910762-C-A | g1 | ** | |||||
25556082-A-G | 23409935-A-G | P1_gr1 | ** | |||||
25938235-G-T | 23792088-G-T | P1_Y1 | ** | |||||
26328667-C-A | 24182520-C-A | P1_Y1 | ** | |||||
27618316-C-A | 25472169-C-A | P1_Y2 | ** | |||||
27714365-C-T | 25568218-C-T | P1_Y2 | ** | |||||
27997714-A-G | 25851567-A-G | P1_Y2 | ** | |||||
28460821-T-C | 26314674-T-C | ** | ||||||
28537199-A-G | 26391052-A-G | ** | ||||||
28545756-A-C | 26399609-A-C | ** | ||||||
56771132-T-TCTTCC | ** | |||||||
56835549-G-T | ** | |||||||
56835806-CGACTC-A | ** | |||||||
56845943-C-A | ** | |||||||
56846258-G-T | ** | |||||||
58977805-G-C | 56831658-G-C | *** | ||||||
22069001-C-A | 19907115-C-A | 14×A | *** | |||||
8125005-A-G | 8256964-A-G | FT295198 | *** | |||||
13483221-C-A | 11327545-C-A | *** | ||||||
7925833-GTT-G | 8057792-GTT-G | 11×T | *** | |||||
56831668-T-C | *** | |||||||
2960054-T-C | 3092013-T-C | *** | ||||||
17678647-TG-T | 15566767-TG-T | *** | ||||||
21690937-T-A | 19529051-T-A | *** | ||||||
16412484-C-A | 14300604-C-A | *** | ||||||
8452180-G-T | 8584139-G-T | *** | ||||||
14745436-A-T | 12633505-A-T | *** | ||||||
4567310-T-A | 4699269-T-A | *** | ||||||
14765711-G-T | 12653780-G-T | *** | ||||||
8274096-C-A | 8406055-C-A | *** | ||||||
17864190-C-A | 15752310-C-A | *** | ||||||
17372419-G-T | 15260539-G-T | *** | ||||||
21414510-AT-A | 19252624-AT-A | 10×T | *** | |||||
6133117-C-A | 6265076-C-A | *** | ||||||
19431416-C-A | 17319536-C-A | *** | ||||||
10882833-C-A | *** | |||||||
7196046-CTT-C,CT | 7328005-CTT-C,CT | 16×T | *** | |||||
2860491-G-T | 2992450-G-T | *** | ||||||
11002113-C-A | *** | |||||||
23041060-G-T | 20879174-G-T | *** | ||||||
2960045-G-A | 3092004-G-A | *** | ||||||
24446744-G-T | 22300597-G-T | *** | ||||||
23327294-C-A | 21165408-C-A | *** | ||||||
21128240-C-A | 18966354-C-A | *** | ||||||
17050132-G-T | 14938252-G-T | *** | ||||||
56832846-G-GTCCAT,GTCCATTCCAC | *** | |||||||
10956579-CA-C,CT | *** | |||||||
22712971-C-A | 20551085-C-A | *** | ||||||
23342073-G-T | 21180187-G-T | *** | ||||||
8274092-C-A | 8406051-C-A | *** | ||||||
16620036-C-A | 14508156-C-A | *** | ||||||
2649567-C-A | 2781526-C-A | *** | ||||||
2860483-G-T | 2992442-G-T | *** | ||||||
2882559-C-A | 3014518-C-A | *** | ||||||
4071700-T-C | 4203659-T-C | *** | ||||||
4757551-T-C | 4889510-T-C | *** | ||||||
5194086-A-G | 5326045-A-G | *** | ||||||
5555099-GA-G | 5687058-GA-G | *** | ||||||
6037642-C-A | 6169601-C-A | *** | ||||||
6967700-C-A | 7099659-C-A | *** | ||||||
7022163-C-A | 7154122-C-A | *** | ||||||
7075104-C-A | 7207063-C-A | *** | ||||||
7142724-G-A | 7274683-G-A | *** | ||||||
7868208-C-A | 8000167-C-A | *** | ||||||
8138198-A-G | 8270157-A-G | *** | ||||||
9062100-C-A | 9224491-C-A | *** | ||||||
9471644-C-G | 9634035-C-G | *** | ||||||
9811326-C-A | 9973717-C-A | *** | ||||||
9843194-A-C | 10005585-A-C | *** | ||||||
10645967-A-G | *** | |||||||
10664757-T-C | *** | |||||||
10780249-C-A | *** | |||||||
11000452-C-CAACTG,T | *** | |||||||
11014317-C-A | *** | |||||||
13485634-T-G | 11329958-T-G | *** | ||||||
13808743-TGGA-T | 11688037-TGGA-T | *** | ||||||
14078939-C-A | 11958233-C-A | *** | ||||||
14875620-TG-T | 12763690-TG-T | *** | ||||||
14898864-C-A | 12786931-C-A | *** | ||||||
15557124-A-G | 13445244-A-G | 19×AT | *** | |||||
16006663-G-T | 13894783-G-T | *** | ||||||
16057205-TA-T | 13945325-TA-T | *** | ||||||
16307645-T-C | 14195765-T-C | *** | ||||||
16527581-T-C | 14415701-T-C | *** | ||||||
16553800-G-T | 14441920-G-T | *** | ||||||
17950978-C-A | 15839098-C-A | *** | ||||||
18128336-C-A | 16016456-C-A | *** | ||||||
18222369-C-A | 16110489-C-A | *** | ||||||
18256098-G-T | 16144218-G-T | *** | ||||||
18454658-T-C | 16342778-T-C | P6_Dst | *** | |||||
18913319-C-T | 16801439-C-T | *** | ||||||
19270671-C-A | 17158791-C-A | *** | ||||||
21543374-G-T | 19381488-G-T | *** | ||||||
23188158-G-A | 21026272-G-A | FT65422 | *** | |||||
23475273-G-TT | 21313387-G-TT | *** | ||||||
24482152-C-A | 22336005-C-A | *** | ||||||
25088335-C-A | 22942188-C-A | g1 | *** | |||||
25592861-ACTCTCT-A,ACTCT | 23446714-ACTCTCT-A,ACTCT | P1_gr1 | 20×CT | *** | ||||
28549846-G-T | 26403699-G-T | *** | ||||||
28549900-C-A | 26403753-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.