Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > Z295/S1217 > S25783 > CTS4065 > 15548847GACAC-G > A5001

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
243919
22313417-G-T 20151531-G-T DYZ19 A*
20627720-G-A 18465834-G-A P4_Prx A*
6291921-A-G 6423880-A-G IR3_Dst A*
25893689-T-C 23747542-T-C P1_Y1 A*
19791118-A-G 17679238-A-G P5_Prx A*
28816563-G-C 26670416-G-C A*
21618836-C-T 19456950-C-T BY134244 YY+
14499229-C-G 12387434-C-G BY96187 YY+
23089972-G-A 20928086-G-A BY142904 YY+
16339597-G-A 14227717-G-A BY107061 YY+
16304977-C-T 14193097-C-T BY106808 YY+
7098270-G-A 7230229-G-A BY63328 Y+
22174461-A-G 20012575-A-G BY138142 YY+
22437006-G-T 20275120-G-T BY218260 DYZ19 +
23573452-G-A 21411566-G-A BY146406 YY+
14477295-T-G 12356564-T-G BY95984 YY+
22661682-G-T 20499796-G-T BY139850 YY+
22163251-C-T 20001365-C-T FGC12267 YY+
16762575-A-G 14650695-A-G BY109913 YY+
9026829-G-A 9189220-G-A BY77474 Y+
24478905-CAT-C 22332758-CAT-C +
21169634-C-T 19007748-C-T BY130848 YY+
10032012-G-T 10194403-G-T BY83186 Y+
15261-G-A +
8036496-A-G 8168455-A-G BY69529 YY+
22437005-G-T 20275119-G-T BY218259 DYZ19 +
18808619-C-A 16696739-C-A BY123999 YY+
18593630-G-C 16481750-G-C BY122421 YY+
19140997-T-C 17029117-T-C BY126658 YY+
17934699-C-T 15822819-C-T BY118530 YY+
17509769-G-T 15397889-G-T BY115330 YY+
17909743-C-T 15797863-C-T BZ4529 YY+
17255248-T-C 15143368-T-C BY113312 YY+
19432716-T-C 17320836-T-C BY129016 YY+
16610360-G-GT 14498480-G-GT 10×T*
22231066-T-A 20069180-T-A DYZ19 *
13842818-CAATGG-C 11722112-CAATGG-C 5×AATGG*
28792869-T-A 26646722-T-A *
10654182-A-C **
9966080-A-C 10128471-A-C **
4598959-C-A 4730918-C-A **
9966078-T-C 10128469-T-C **
4547821-C-A 4679780-C-A **
9966077-A-C 10128468-A-C **
10678343-C-G **
9966071-G-A 10128462-G-A **
9944201-G-T 10106592-G-T **
9849796-G-T 10012187-G-T **
9723827-A-C 9886218-A-C IR3_Prx **
9542062-GT-G 9704453-GT-G IR3_Prx **
10669540-A-G **
10687039-A-T **
10949528-C-CACTAA **
10807104-A-C **
10866343-ACTCC-A **
10852269-C-A **
10845360-C-A **
10840556-C-G **
21584528-G-T 19422642-G-T **
10899034-C-A **
10807062-C-G **
10883844-C-A **
21673191-C-A 19511305-C-A **
4582318-C-A 4714277-C-A **
10795558-C-A **
4871454-T-TA 5003413-T-TA 10×A**
21790529-G-C 19628643-G-C **
21861829-G-C 19699943-G-C **
22085212-G-T 19923326-G-T **
9077116-T-C 9239507-T-C **
5330536-C-A 5462495-C-A **
9063865-T-TG 9226256-T-TG **
6714276-G-T 6846235-G-T **
7339745-A-G 7471704-A-G **
7254948-G-T 7386907-G-T **
5735059-G-T 5867018-G-T **
7200565-C-T 7332524-C-T **
7138984-C-A 7270943-C-A **
6827677-G-T 6959636-G-T **
6775432-AG-A 6907391-AG-A **
6694200-C-G 6826159-C-G **
7471065-C-A 7603024-C-A IR1_L **
6528523-G-T 6660482-G-T **
6522638-G-T 6654597-G-T **
6522466-G-T 6654425-G-T **
6505324-C-A 6637283-C-A **
5742081-A-T 5874040-A-T **
6359688-G-T 6491647-G-T **
5837377-G-T 5969336-G-T **
7414041-A-G 7546000-A-G **
7985545-A-G 8117504-A-G **
4893451-A-G 5025410-A-G **
8666745-TTTTG-T 8798704-TTTTG-T **
22101001-T-C 19939115-T-C **
5999586-C-A 6131545-C-A **
8973602-G-T 9135993-G-T **
9110471-G-T **
9056336-C-A **
8855366-T-C 8987325-T-C **
8774481-T-G 8906440-T-G **
5443427-C-A 5575386-C-A **
7985551-C-T 8117510-C-T **
8100599-C-A 8232558-C-A **
5514413-G-T 5646372-G-T **
8062504-A-C 8194463-A-C **
8062502-T-A 8194461-T-A **
10960380-A-C **
7996960-T-G 8128919-T-G **
7985568-AT-A 8117527-AT-A **
5645130-C-A 5777089-C-A **
10956308-C-A **
11008288-T-G **
10960385-T-G **
15301023-G-A 13189122-G-A **
15862514-A-C 13750634-A-C **
15763268-G-T 13651388-G-T **
15744032-C-A 13632152-C-A **
15742479-A-G 13630599-A-G **
15655272-C-T 13543392-C-T **
15631750-C-A 13519870-C-A **
15503274-GT-G 13391394-GT-G **
15475321-C-A 13363441-C-A **
19746887-G-GTT 17635007-G-GTT P5_Prx **
19733027-A-T 17621147-A-T P5_Prx **
15111464-C-A 12999551-C-A **
14977326-T-G 12865401-T-G **
14766685-C-A 12654754-C-A **
14715887-C-A 12603954-C-A **
14382784-C-A 12262080-C-A **
14367670-C-A 12246966-C-A **
14181570-A-G 12060864-A-G **
14120332-G-A 11999626-G-A **
15890827-T-A 13778947-T-A **
19656214-TCTAAAATTTA-T 17544334-TCTAAAATTTA-T P5_Prx **
14107070-C-A 11986364-C-A **
19610352-A-T 17498472-A-T P5_Prx **
18873825-T-C 16761945-T-C **
18796597-G-T 16684717-G-T **
18796463-G-T 16684583-G-T **
18767868-G-T 16655988-G-T **
19459222-G-T 17347342-G-T **
18411395-A-G 16299515-A-G P6_Gap **
18210907-G-C 16099027-G-C **
18190558-G-A 16078678-G-A **
17927432-CA-C 15815552-CA-C **
16021526-G-T 13909646-G-T **
17568464-C-A 15456584-C-A **
17480185-A-C 15368305-A-C **
17217443-G-A 15105563-G-A **
17130444-C-T 15018564-C-T **
17053215-A-G 14941335-A-G **
16522966-C-A 14411086-C-A **
16412471-C-A 14300591-C-A **
16344449-C-T 14232569-C-T **
16199736-A-T 14087856-A-T **
14107100-G-T 11986394-G-T **
14050075-T-C 11929369-T-C **
10960399-A-C **
11019479-C-G **
13446556-A-T 11290880-A-T **
13446538-T-A 11290862-T-A **
13446526-A-G 11290850-A-G **
13295415-A-C 11139739-A-C **
13217525-G-A 11061849-G-A **
11035144-G-T **
11034116-T-C **
11021394-T-G **
11008292-TCCACG-T **
13446570-C-T 11290894-C-T **
4463027-G-T 4594986-G-T **
11001551-T-C **
11001520-ACAT-A **
10987506-TTCCATTC-T **
10983520-G-GCATTC **
10978230-T-G **
10967517-C-CGGTTTGAAGG **
10960401-C-CCAATG **
13446561-A-C 11290885-A-C **
13447857-T-A 11292181-T-A **
14050069-A-T 11929363-A-T **
13579405-A-G 11423729-A-G **
14025007-C-A 11904301-C-A **
14005930-C-A 11885224-C-A **
13971514-A-G 11850808-A-G **
13907365-C-A 11786659-C-A **
13866299-C-A 11745593-C-A **
20489684-C-A 18327798-C-A P5_Dst **
13711370-G-C 11555694-G-C **
13705524-T-TCTACC 11549848-T-TCTACC **
13579404-C-T 11423728-C-T **
13450114-CCCCATCCCATCCCATTCTATTCCATTCCAT-C 11294438-CCCCATCCCATCCCATTCTATTCCATTCCAT-C **
13579403-G-C 11423727-G-C **
13555631-C-A 11399955-C-A **
13502410-C-A 11346734-C-A **
13461704-C-A 11306028-C-A **
13455601-CTCCAT-C 11299925-CTCCAT-C **
13454643-G-A 11298967-G-A **
13454642-T-C 11298966-T-C **
21379077-G-A 19217191-G-A **
21555392-T-G 19393506-T-G **
4472987-C-A 4604946-C-A **
4123980-A-C 4255939-A-C **
4417405-C-A 4549364-C-A **
10971256-A-T **
10686512-ACTCCG-A **
24485331-T-C 22339184-T-C **
28788015-G-T 26641868-G-T **
28787991-TGGAACA-T 26641844-TGGAACA-T **
11001546-T-C **
10754959-T-A **
18925401-C-A 16813521-C-A **
8261185-G-GA 8393144-G-GA 9×A**
10971249-C-T **
13579416-A-C 11423740-A-C **
10971241-A-AAG **
10971238-TCC-T **
14384654-G-T 12263950-G-T **
13218966-C-CAA 11063290-C-CAA 21×A**
18343602-C-T 16231722-C-T P6_Prx 25×T**
11001401-C-A **
26100550-C-A 23954403-C-A P1_Y1 **
10821317-C-A **
26391520-C-A 24245373-C-A P1_Y1 **
16506721-C-A 14394841-C-A **
13446588-TC-T 11290912-TC-T **
26495113-G-A 24348966-G-A P1_Y1 **
10982802-C-A **
23311328-C-A 21149442-C-A **
28597843-CTTT-C 26451696-CTTT-C 15×T**
4256750-G-T 4388709-G-T **
5447011-C-A 5578970-C-A **
6534787-C-A 6666746-C-A **
8908075-C-A 9040034-C-A **
10684281-C-T **
10767847-A-ATTATACTGCG **
18422919-C-A 16311039-C-A P6_Gap **
10890338-C-T **
56835535-C-T **
11034878-G-T **
11034857-TCCATGA-T **
10684276-C-T **
24112608-G-T 21966461-G-T P3_b1 **
10779272-C-A **
15392432-C-A 13280552-C-A **
14566237-C-A 12454437-C-A **
13705490-G-C 11549814-G-C **
15789705-C-A 13677825-C-A **
16136070-T-TA 14024190-T-TA P8_Dst **
14992887-A-T 12880972-A-T **
13446618-T-A 11290942-T-A **
18611693-C-A 16499813-C-A **
28462265-G-T 26316118-G-T **
28481134-C-T 26334987-C-T S26259 **
13446608-CT-C 11290932-CT-C **
13446606-A-AC 11290930-A-AC **
10807070-C-T **
14107084-C-A 11986378-C-A **
22356669-G-T 20194783-G-T FGC53776 DYZ19 **
13857590-GGGCTC-G 11736884-GGGCTC-G **
28657538-C-A 26511391-C-A **
5393294-G-GGAA 5525253-G-GGAA 10×GAA**
28788018-A-C 26641871-A-C **
13712566-CT-C 11556890-CT-C **
7985566-C-T 8117525-C-T **
7152991-C-A 7284950-C-A **
16933315-C-A 14821435-C-A **
18965981-T-G 16854101-T-G S477 Z191 **
56841526-C-A **
56860632-G-T **
24376232-G-A 22230085-G-A **
13468478-C-A 11312802-C-A **
10755378-A-T **
14622212-C-CA 12510410-C-CA 10×A**
27714219-C-A 25568072-C-A P1_Y2 **
10982834-A-T **
27546812-C-T 25400665-C-T P1_Y2 **
27570833-A-T 25424686-A-T P1_Y2 **
27836382-TTTTATATGTCA-T 25690235-TTTTATATGTCA-T P1_Y2 **
6682116-C-A 6814075-C-A **
4215449-G-T 4347408-G-T **
3804768-C-A 3936727-C-A **
27914117-G-T 25767970-G-T P1_Y2 **
15433501-C-A 13321621-C-A **
16829274-GA-G 14717394-GA-G 10×A**
10659507-T-C **
11001582-T-A **
11001581-C-T **
27914163-TTTTTATAA-T 25768016-TTTTTATAA-T P1_Y2 **
6426992-T-TA 6558951-T-TA 9×A**
10921524-T-TCCATC **
10921524-T-A **
17702292-C-CT 15590412-C-CT 10×T**
14992886-G-A 12880971-G-A **
27906785-G-T 25760638-G-T P1_Y2 **
23787283-G-T 21625397-G-T **
16676072-C-A 14564192-C-A **
10935607-C-A **
18008612-C-A 15896732-C-A P7_Dst **
10769631-A-T **
10769625-C-T **
10949524-A-C **
24074171-C-A 21928024-C-A P3_b1 **
18053454-C-T 15941574-C-T **
10755483-A-G **
4223441-C-A 4355400-C-A **
4779924-G-T 4911883-G-T **
7723822-G-A 7855781-G-A **
11034125-T-C **
11662556-G-T **
3550713-C-A 3682672-C-A **
11001414-C-A **
11001411-C-G **
13457686-C-A 11302010-C-A **
14196384-C-A 12075678-C-A **
25524725-TTGA-T 23378578-TTGA-T P1_gr1 **
18270287-G-A 16158407-G-A **
28024141-T-G 25877994-T-G P1_Y2 **
14586182-G-T 12474382-G-T **
2962516-C-A 3094475-C-A **
4242919-C-A 4374878-C-A **
4132225-G-T 4264184-G-T **
3998933-T-C 4130892-T-C **
3887161-C-A 4019120-C-A **
3755670-C-A 3887629-C-A **
3589575-G-T 3721534-G-T **
3377188-G-T 3509147-G-T **
3296684-C-A 3428643-C-A **
3244200-C-A 3376159-C-A **
2854773-C-A 2986732-C-A **
11001525-AC-A **
2845821-CAAAAAAAA-C 2977780-CAAAAAAAA-C 28×A**
2791565-G-T 2923524-G-T **
20128594-C-A 18016714-C-A P5_Dst **
9979101-C-A 10141492-C-A **
10660126-C-T **
5845206-G-T 5977165-G-T **
19302358-C-A 17190478-C-A **
6037566-C-A 6169525-C-A **
14100981-G-T 11980275-G-T **
21476440-C-A 19314554-C-A **
8739018-C-A 8870977-C-A **
10660218-G-T **
11034919-C-A **
16152221-AC-A 14040341-AC-A P8_Dst **
18395809-C-A 16283929-C-A P6_Gap **
15952032-T-C 13840152-T-C **
15952026-T-C 13840146-T-C **
13859915-G-GATGCA 11739209-G-GATGCA **
22776620-A-AT 20614734-A-AT **
14389953-C-A 12269249-C-A **
22800748-C-A 20638862-C-A **
11034894-C-T **
10769567-TACCA-T **
10789569-T-G **
22426936-C-A 20265050-C-A DYZ19 **
13712593-G-T 11556917-G-T **
23019968-G-A 20858082-G-A **
28567502-C-A 26421355-C-A **
10773142-C-A **
23065077-C-G 20903191-C-G **
10807053-C-T **
22660649-C-A 20498763-C-A **
18080464-C-A 15968584-C-A **
10769603-C-A **
22767306-A-T 20605420-A-T **
18343590-A-T 16231710-A-T P6_Prx **
2909200-C-A 3041159-C-A **
22483747-C-G 20321861-C-G DYZ19 **
22505457-G-A 20343571-G-A DYZ19 **
22622517-G-T 20460631-G-T **
7396439-C-A 7528398-C-A **
10660138-T-C **
18838814-C-A 16726934-C-A **
8138151-C-A 8270110-C-A **
14107019-C-A 11986313-C-A **
19040849-G-T 16928969-G-T **
13445387-A-G 11289711-A-G **
10769609-G-T **
19755990-T-A 17644110-T-A P5_Prx **
56707214-G-T **
18953042-GGGGA-G 16841162-GGGGA-G 4×GGGA**
28728229-G-A 26582082-G-A ***
24384111-C-A 22237964-C-A ***
24961170-C-A 22815023-C-A g1 ***
23827698-G-T 21665812-G-T ***
22483535-G-T 20321649-G-T DYZ19 ***
56836644-T-A ***
22091490-A-G 19929604-A-G ***
56836655-G-C ***
20640289-T-C 18478403-T-C P4_Prx ***
56836699-C-A ***
56836618-A-T ***
23421278-T-C 21259392-T-C ***
21558718-C-A 19396832-C-A ***
13842725-ATGGAG-A 11722019-ATGGAG-A ***
19318334-C-A 17206454-C-A ***
6953202-TACACAC-T,TAC 7085161-TACACAC-T,TAC 17×AC***
7305542-C-CT 7437501-C-CT 10×T***
5800194-C-A 5932153-C-A ***
10776547-C-T ***
17533824-GAAAAA-G 15421944-GAAAAA-G 21×A***
56836626-G-A ***
24884030-ATT-A 22737883-ATT-A g1 13×T***
10668339-G-C,T ***
21737920-A-C 19576034-A-C BY7116 ***
16594440-C-A 14482560-C-A ***
16028164-C-A 13916284-C-A ***
13472228-AC-A 11316552-AC-A ***
15280833-C-A 13168932-C-A ***
11015925-C-T ***
10658518-C-G,T ***
19345125-C-A 17233245-C-A ***
10764636-A-G ***
10999869-C-T BY84117 ***
15422098-CAA-C,CA 13310218-CAA-C,CA 20×A***
56831494-C-T ***
56834887-G-A ***
17118395-CT-C,CTT 15006515-CT-C,CTT 16×T***
10776519-T-A ***
7146776-G-GTT 7278735-G-GTT 18×T***
16308486-CTTTT-C 14196606-CTTTT-C 25×T***
22100782-C-G 19938896-C-G FGC64125 ***
18414381-AGAAGGAAG-A 16302501-AGAAGGAAG-A P6_Gap 15×GAAG***
8398537-T-TA 8530496-T-TA 13×A***
58982800-G-C 56836653-G-C A18570 ***
14102359-TTCTA-T 11981653-TTCTA-T 9×TCTA***
58982803-T-G 56836656-T-G ***
13488933-T-C,G 11333257-T-C,G ***
56833502-CCACTA-CCACTT,T ***
18933579-CTG-C 16821699-CTG-C ***
10838830-A-G ***
18570181-C-A 16458301-C-A ***
18108555-A-G 15996675-A-G ***
15952005-G-A 13840125-G-A ***
15951997-C-T 13840117-C-T FGC64512 ***
15156869-G-T 13044956-G-T ***
13811083-G-T 11690377-G-T ***
11668594-C-A ***
13585403-C-A 11429727-C-A ***
13483336-G-A 11327660-G-A ***
13454628-T-CA 11298952-T-CA ***
13451980-CACCACTCCACTGCTCTCCAA-C,CTCCACTGCTCTCCAC 11296304-CACCACTCCACTGCTCTCCAA-C,CTCCACTGCTCTCCAC ***
13450411-CTCCATTCCATTCCATTCTAT-C,CTCCATTCCATTCCATTCCAT 11294735-CTCCATTCCATTCCATTCTAT-C,CTCCATTCCATTCCATTCCAT ***
10838843-C-A ***
10838836-TGCCAT-C ***
10796677-C-CAATGTAGTTG ***
13472233-C-CT 11316557-C-CT ***
2784638-C-A 2916597-C-A ***
23352393-C-A 21190507-C-A ***
17302239-TAA-T,TA 15190359-TAA-T,TA 22×A***
16593775-C-A 14481895-C-A ***
13472219-C-T 11316543-C-T ***
14771126-CTTTT-C,CTTT 12659195-CTTTT-C,CTTT 16×T***
18793538-G-T 16681658-G-T ***
6144857-G-T 6276816-G-T IR3_Dst ***
10776520-T-TGCACA ***
7307494-TAG-T 7439453-TAG-T 11×AG***
8535204-GT-G,GTT 8667163-GT-G,GTT 19×T***
8980688-A-G 9143079-A-G ***
10030081-T-C 10192472-T-C ***
10689750-C-A ***
10776500-T-C ***
7222619-C-A 7354578-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 243919944886777462387656488
Used in age calculations944886777462387656488
Counts of SNPs2322
Variant counts last updated 2019-09-10 00:14:25.



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