Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > Z253 > Z2534 > BY25450 > FGC5618 > FGC5625 > L226 > FGC5660 > Z17669 > ZZ31 > FGC5628 > FGC5659 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
745552
13695052-G-A 11539376-G-A A*
26408787-G-A 24262640-G-A P1_Y1 A*
7290897-T-C 7422856-T-C DC839 YY+
14095138-G-C 11974432-G-C DC842 YY+
7233643-T-C 7365602-T-C DC838 YY+
20920983-A-T 18759097-A-T DC843 P4_Dst +
21239508-C-T 19077622-C-T DC844 YY+
21344540-G-T 19182654-G-T DC845 YY+
21514228-T-A 19352342-T-A DC846 YY+
8234534-A-T 8366493-A-T DC841 YY+
22444935-G-T 20283049-G-T BY52662 DYZ19 +
7349383-G-A 7481342-G-A DC840 YY+
22457974-C-A 20296088-C-A DYZ19 +
9420138-ATATTATTAT-A 9582529-ATATTATTAT-A 14×TAT+
22269383-A-G 20107497-A-G DYZ19 *
10782753-T-G **
10820406-T-A **
10817697-T-G **
10746685-C-T **
10764564-C-CTGTTCCGTAT **
10808657-A-T **
10808652-A-T **
10808605-CCAT-C **
10764574-C-T **
10807380-C-T **
10793980-C-G **
10807360-C-A **
10794002-A-C **
10782797-C-G **
10794708-T-C **
10793910-A-T **
10793918-G-A **
10793942-A-T **
10793953-CCACAT-C **
10794701-C-T **
10794697-A-T **
10794679-C-T **
16860749-C-CA 14748869-C-CA 24×A**
10844883-C-T **
10836527-T-G **
10952234-C-A **
10982305-T-A **
10975683-G-T **
10975670-T-C **
10975656-C-T **
10975654-C-G **
10972658-C-T **
10971038-T-C **
10967528-C-G **
10967523-C-G **
10959061-C-A **
10947696-T-TCACAA **
10836528-C-G **
10947653-T-G **
10946570-TCTCCA-T **
10942211-C-A **
10933095-C-A **
10930974-T-C **
10909683-T-A **
10893327-C-A **
10862724-T-C **
10847947-C-G **
10691196-C-T **
10844864-A-T **
10691198-A-AT **
9839401-C-T 10001792-C-T **
10691190-TC-T **
4900155-C-A 5032114-C-A **
7163162-C-G 7295121-C-G **
7160942-G-A 7292901-G-A **
7158093-G-A 7290052-G-A **
7040580-G-T 7172539-G-T **
7039561-C-G 7171520-C-G **
6277646-A-C 6409605-A-C IR3_Dst **
5869980-T-TA 6001939-T-TA **
5577207-C-A 5709166-C-A **
4931528-C-T 5063487-C-T **
4919387-G-T 5051346-G-T **
4701082-G-T 4833041-G-T **
7287859-C-A 7419818-C-A **
4687657-G-A 4819616-G-A **
4534071-T-G 4666030-T-G **
4382449-C-CAAA 4514408-C-CAAA 17×A**
4382411-C-A 4514370-C-A **
4144076-A-G 4276035-A-G **
3627851-T-C 3759810-T-C **
3593678-A-T 3725637-A-T **
3289224-T-C 3421183-T-C **
3273491-T-G 3405450-T-G **
3158860-T-G 3290819-T-G **
7285622-C-A 7417581-C-A **
7311845-A-C 7443804-A-C **
10684357-C-A **
8786680-A-G 8918639-A-G **
10679274-T-A **
10668174-C-A **
10661030-T-C **
10645918-C-G **
9986151-G-A 10148542-G-A **
10982325-A-T **
9672339-C-A 9834730-C-A IR3_Prx **
9511507-T-C 9673898-T-C **
9469741-C-A 9632132-C-A **
9025617-G-A 9188008-G-A **
8702832-C-TA 8834791-C-TA **
7392146-C-A 7524105-C-A **
8353308-T-A 8485267-T-A **
8350146-T-C 8482105-T-C **
8261173-T-C 8393132-T-C **
8013432-C-A 8145391-C-A **
7990673-C-A 8122632-C-A **
7861217-T-C 7993176-T-C **
7756891-C-A 7888850-C-A **
7444150-T-A 7576109-T-A **
7423258-G-T 7555217-G-T **
7407294-A-T 7539253-A-T **
10982312-A-C **
10989489-C-G **
10982326-C-G **
17638326-C-A 15526446-C-A **
18963805-T-G 16851925-T-G **
18959131-C-G 16847251-C-G **
18959128-T-C 16847248-T-C **
18959116-G-A 16847236-G-A **
18959106-T-C 16847226-T-C **
18580501-C-A 16468621-C-A **
18071351-T-C 15959471-T-C **
17779723-C-A 15667843-C-A **
17756742-T-C 15644862-T-C **
17686733-C-G 15574853-C-G **
17580852-C-A 15468972-C-A **
19122286-C-A 17010406-C-A **
17426344-T-G 15314464-T-G **
17363218-T-C 15251338-T-C **
17313511-T-C 15201631-T-C **
17193095-C-A 15081215-C-A **
17192599-C-A 15080719-C-A **
16989210-C-A 14877330-C-A **
16620428-G-A 14508548-G-A **
16541116-C-A 14429236-C-A **
16060775-A-T 13948895-A-T **
16045787-C-A 13933907-C-A **
18993577-C-A 16881697-C-A **
19394049-T-A 17282169-T-A **
15909812-C-A 13797932-C-A **
24070755-A-C 21924608-A-C P3_b1 **
56841241-G-A **
56840193-C-A **
56838845-T-TGA **
56761500-C-G **
56761490-A-C **
28641009-C-A 26494862-C-A **
26228677-C-A 24082530-C-A P1_Y1 **
26228672-C-A 24082525-C-A P1_Y1 **
26124455-A-C 23978308-A-C P1_Y1 **
24523386-C-A 22377239-C-A **
23554906-A-G 21393020-A-G **
19479376-T-G 17367496-T-G **
23311322-G-C 21149436-G-C **
23189940-T-C 21028054-T-C **
22529681-C-A 20367795-C-A **
22068621-C-G 19906735-C-G **
21614701-C-A 19452815-C-A **
21319958-A-C 19158072-A-C **
21148553-C-A 18986667-C-A **
20643237-G-GATAC 18481351-G-GATAC P4_Prx **
20536926-G-T 18375040-G-T P5_Dst **
19517744-A-C 17405864-A-C **
19479728-TGCGC-T 17367848-TGCGC-T **
16033827-C-A 13921947-C-A **
15786009-T-G 13674129-T-G **
10982338-T-A **
13329508-T-G 11173832-T-G **
13521093-C-A 11365417-C-A **
13478176-G-C 11322500-G-C **
13476235-G-T 11320559-G-T **
13476181-AG-A 11320505-AG-A **
13461788-A-G 11306112-A-G **
13461758-C-G 11306082-C-G **
13458005-C-T 11302329-C-T **
13457724-T-TG 11302048-T-TG **
13453332-TCC-T 11297656-TCC-T **
13329510-A-C 11173834-A-C **
13323492-GACAAAA-G 11167816-GACAAAA-G **
13643287-C-A 11487611-C-A **
13319591-C-A 11163915-C-A **
11028153-A-TT **
11028148-TC-T **
11011302-A-T **
11003911-A-T **
10989540-A-T **
10989491-C-CT **
3051435-T-C 3183394-T-C **
10988585-TATTCC-T **
10987646-A-T **
10983792-C-A **
13601869-C-A 11446193-C-A **
13643291-T-G 11487615-T-G **
15749536-C-A 13637656-C-A **
14561249-C-A 12449450-C-A **
15617938-T-C 13506058-T-C Y25274 **
15556906-C-T 13445026-C-T **
15365849-CAGGTGGGA-C 13253969-CAGGTGGGA-C **
15210883-G-T 13098969-G-T **
15181757-C-T 13069843-C-T **
15123812-C-A 13011899-C-A **
14948829-A-C 12836903-A-C **
14932056-C-A 12820121-C-A **
14746110-C-T 12634179-C-T **
14689225-G-T 12577291-G-T **
14522477-C-G 12410678-C-G **
13857931-G-T 11737225-G-T **
14413172-C-A 12292469-C-A **
14354470-G-T 12233765-G-T **
14200501-T-G 12079795-T-G **
14159721-T-G 12039015-T-G **
14152300-T-G 12031594-T-G **
14040878-C-A 11920172-C-A **
14036192-C-A 11915486-C-A **
14012370-G-A 11891664-G-A **
13935669-C-A 11814963-C-A **
13893698-G-A 11772992-G-A **
13859510-A-C 11738804-A-C **
3152155-C-A 3284114-C-A **
4929293-C-A 5061252-C-A **
10925526-T-C **
10667007-T-G **
13457975-C-A 11302299-C-A **
10862715-C-T **
5524383-C-A 5656342-C-A **
10747022-C-T **
10841998-C-T **
21515859-TCTC-T 19353973-TCTC-T **
10975650-T-C **
10841953-C-T **
5874256-C-A 6006215-C-A **
10667009-C-CATTAG **
10956578-C-A **
18039349-A-T 15927469-A-T **
22333860-C-A 20171974-C-A DYZ19 **
10667028-C-GTGTTA **
10925521-T-C **
13461039-A-C 11305363-A-C **
6773436-C-A 6905395-C-A **
14073187-C-CT 11952481-C-CT 27×T**
4081590-C-A 4213549-C-A **
7896908-C-A 8028867-C-A **
10747017-C-G **
10958848-ATGCAT-A **
14354476-T-C 12233771-T-C **
6191301-AAC-A 6323260-AAC-A IR3_Dst **
10964780-T-A **
14926460-C-A 12814525-C-A **
10793933-T-C **
10880307-C-G **
10836486-C-T **
13457968-C-A 11302292-C-A **
15486025-C-A 13374145-C-A **
28808580-T-C 26662433-T-C **
19113723-TAAAA-T 17001843-TAAAA-T 28×A**
19844961-C-A 17733081-C-A P5_Prx **
10847972-C-T **
14544199-G-T 12432400-G-T **
13556293-C-A 11400617-C-A **
28483656-C-A 26337509-C-A **
16240910-C-A 14129030-C-A **
13215379-C-A 11059703-C-A **
24359587-C-CAA 22213440-C-CAA 13×A**
10982304-C-A **
15684165-C-A 13572285-C-A **
3990660-GTC-G 4122619-GTC-G **
2767863-C-A 2899822-C-A **
10793983-C-T **
13937235-C-A 11816529-C-A **
10988632-C-T **
5221042-C-A 5353001-C-A **
19379677-T-A 17267797-T-A **
10892568-C-T **
22127967-G-T 19966081-G-T **
10989501-T-C **
10989515-A-T **
10973632-C-A **
27808854-T-TAA 25662707-T-TAA P1_Y2 10×A**
10967529-A-T **
11018261-T-TCCACA **
11018266-T-G **
11018280-T-C **
15477321-C-A 13365441-C-A **
28497348-C-A 26351201-C-A **
10988556-A-C **
10958833-T-C **
10791003-C-T **
10791001-T-C **
10790995-AT-A **
10790993-T-CC **
17128525-C-A 15016645-C-A **
10860272-G-A **
10926611-G-A **
10964818-A-T **
13458003-T-C 11302327-T-C **
19755784-G-GAA 17643904-G-GAA P5_Prx **
10781515-G-C **
22127975-C-A 19966089-C-A 20×T**
10828843-C-T **
10793901-T-C **
9094308-C-A 9256699-C-A **
10782777-G-T **
10782775-G-T **
11027138-G-T **
10937462-TTCCAA-T **
10660924-G-T **
5858447-C-A 5990406-C-A **
13856361-T-A 11735655-T-A **
25939844-G-T 23793697-G-T P1_Y1 **
19755779-T-G 17643899-T-G A14512 P5_Prx **
10841948-C-A **
19755780-T-G 17643900-T-G A14513 P5_Prx **
10839448-G-T **
10804812-T-C **
10782765-T-A **
19000189-C-A 16888309-C-A **
10759991-A-T **
19755781-T-G 17643901-T-G A14514 P5_Prx **
9793445-A-AT 9955836-A-AT 10×T**
11035327-A-C **
5828971-ACAC-A 5960930-ACAC-A **
22843813-C-A 20681927-C-A **
10936751-G-A **
10683221-C-T **
18192499-C-A 16080619-C-A **
10952246-A-G **
18880241-C-A 16768361-C-A **
28640415-C-A 26494268-C-A **
13811063-T-A 11690357-T-A **
10909681-C-T **
21091321-C-A 18929435-C-A **
9498762-C-A 9661153-C-A **
28775379-C-A 26629232-C-A **
10936771-C-A **
5625988-C-A 5757947-C-A **
13489062-G-C 11333386-G-C **
8748524-C-A 8880483-C-A **
6642409-C-A 6774368-C-A **
14025749-GAGAA-G 11905043-GAGAA-G 5×AGAA**
9983182-C-A 10145573-C-A **
18343602-CTTTTTTT-C 16231722-CTTTTTTT-C P6_Prx 25×T**
10685781-C-A **
14768679-A-T 12656748-A-T PF1650 M5456 CTS3250 **
19300243-G-T 17188363-G-T **
10936769-C-T **
10936784-C-T **
10862759-A-C **
10952247-C-T **
2752595-A-C 2884554-A-C **
2729641-TGTATGTC-T 2861600-TGTATGTC-T **
2708735-T-G 2840694-T-G **
14938401-C-A 12826476-C-A **
10847944-T-C **
10793894-G-A **
11017705-C-A **
10893670-C-T **
15988088-C-A 13876208-C-A **
14504634-C-A 12392839-C-A **
7996969-C-T 8128928-C-T FGC8970 **
10936789-A-T **
10967502-C-T **
13478156-C-A 11322480-C-A **
13803235-A-G 11682529-A-G **
6730314-C-A 6862273-C-A **
10787333-T-C **
8698693-C-A 8830652-C-A **
10936860-T-A **
10936836-CAATTTCACTT-C **
10936828-A-T **
10936804-T-C **
10936789-A-ATCCAC **
10943360-C-A **
56841188-GT-G **
13476210-T-C 11320534-T-C **
23056086-C-A 20894200-C-A **
10952214-C-A **
14953376-C-A 12841450-C-A **
10950039-C-A **
10662146-G-C **
56841207-G-A **
56838844-G-T **
13457997-G-T 11302321-G-T **
16471527-C-A 14359647-C-A **
10947669-C-A **
10761221-A-G **
10761220-A-G **
15963977-T-G 13852097-T-G **
10801526-C-T **
58971887-CATAT-C 56825740-CATAT-C 12×AT**
26228681-C-A 24082534-C-A P1_Y1 **
10748243-T-A **
14300084-C-A 12179378-C-A **
10773650-C-A **
10936856-G-C **
2758860-AAG-A 2890819-AAG-A **
4920947-G-T 5052906-G-T **
16050962-C-T 13939082-C-T **
10971969-TTCCAC-T **
56841198-C-T **
14474769-C-A 12354038-C-A **
23044194-C-A 20882308-C-A **
13461828-G-A 11306152-G-A **
2708724-C-T 2840683-C-T **
9531232-GT-G 9693623-GT-G IR3_Prx **
28727928-C-A 26581781-C-A **
10796658-A-T **
10793970-C-G **
28798642-A-T 26652495-A-T **
10989529-C-T **
22429817-G-T 20267931-G-T DYZ19 **
2981247-G-T 3113206-G-T **
13461067-C-A 11305391-C-A ***
23578753-G-T 21416867-G-T ***
23435702-TTGA-GA,T 21273816-TTGA-GA,T ***
8470395-G-GT 8602354-G-GT 10×T***
23202970-C-A 21041084-C-A ***
23381967-C-G 21220081-C-G BY144940 ***
28784568-A-G 26638421-A-G ***
22698922-C-A 20537036-C-A ***
22561516-C-A 20399630-C-A ***
13488805-C-A 11333129-C-A ***
19123295-C-A 17011415-C-A ***
56830350-T-C,G ***
17004633-G-GA 14892753-G-GA 9×A***
15641935-G-GA 13530055-G-GA 11×A***
13456313-C-A 11300637-C-A ***
56828630-A-G ***
10755366-C-T ***
13461073-C-T 11305397-C-T ***
10755433-A-G ***
2783734-CAAA-C 2915693-CAAA-C 15×A***
10992876-T-A,G ***
20723277-CTT-C 18561391-CTT-C P4_Prx 15×T***
13455105-CACCCT-G 11299429-CACCCT-G ***
10971115-C-A ***
17004618-CAAA-C,CAA 14892738-CAAA-C,CAA 14×A***
11000445-T-TTCTC ***
10973614-T-TTCCAC ***
10848016-C-A ***
10847989-C-A ***
10847974-T-C ***
16913280-G-GTT 14801400-G-GTT 10×T***
22173954-GAAA-G 20012068-GAAA-G 16×A***
10975415-C-A ***
5107725-C-A 5239684-C-A ***
10658500-G-A,T ***
10016906-C-A 10179297-C-A ***
13460983-C-G 11305307-C-G ***
8736336-A-G 8868295-A-G ***
8321435-CTT-C,CTTTT 8453394-CTT-C,CTTTT 15×T***
8036357-A-G 8168316-A-G ***
21425339-CTTTTTTTT-C 19263453-CTTTTTTTT-C 24×T***
17274959-T-C 15163079-T-C BY52063 ***
10971121-A-C ***
13482489-G-A 11326813-G-A ***
17279463-TAGATGC-T 15167583-TAGATGC-T ***
19395643-T-TA 17283763-T-TA 10×A***
17235406-C-A 15123526-C-A ***
16819886-C-A 14708006-C-A ***
16702232-C-A 14590352-C-A ***
22938812-ATT-A 20776926-ATT-A 14×T***
10657362-C-T ***
15682178-T-A 13570298-T-A BY103290 ***
15138352-C-A 13026439-C-A ***
14949216-A-AT 12837290-A-AT ***
14053691-A-T 11932985-A-T ***
8672932-C-A 8804891-C-A ***
13478400-A-T 11322724-A-T ***
13482496-G-A 11326820-G-A ***
13453115-A-T 11297439-A-T ***
13461836-A-T 11306160-A-T ***
13461802-C-G 11306126-C-G ***
13461794-G-A 11306118-G-A ***
15980721-T-TAA 13868841-T-TAA 17×A***
13231554-C-A 11075878-C-A ***
10848023-T-A ***
34187-C-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 745552931402176528387572606
Used in age calculations931402176528387572606
Counts of SNPs88
Variant counts last updated 2018-07-20 17:57:59.



Big Tree Main Page