Smithhart
BigY2: 563428MDKA Birth: United States
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 563428 |
---|---|---|---|---|---|---|---|---|
6328353-G-A | 6460312-G-A | IR3_Dst | A* | |||||
19619019-G-A | 17507139-G-A | P5_Prx | Y | A* | ||||
22305477-C-G | 20143591-C-G | DYZ19 | A* | |||||
19332063-ATTTTG-A | 17220183-ATTTTG-A | 9×TTTTG | + | |||||
22464538-T-A | 20302652-T-A | Z15318 | DYZ19 | + | ||||
6104276-A-G | 6236235-A-G | BY59072 | + | |||||
9841525-A-C | 10003916-A-C | BY81354 | Y | Y | + | |||
13479904-C-T | 11324228-C-T | BY86046 | + | |||||
13646778-G-A | 11491102-G-A | BY86909 | DYZ17 | + | ||||
13692675-G-T | 11536999-G-T | BY88739 | DYZ17 | + | ||||
14410902-C-T | 12290199-C-T | BY95574 | Y | Y | + | |||
17510828-G-A | 15398948-G-A | BY115348 | Y | Y | + | |||
22107670-T-A | 19945784-T-A | BY137678 | Y | Y | + | |||
22466465-C-T | 20304579-C-T | BY47348 | DYZ19 | + | ||||
22859186-G-A | 20697300-G-A | BY141275 | Y | Y | + | |||
23119864-C-T | 20957978-C-T | BY143100 | Y | Y | + | |||
13684819-A-T | 11529143-A-T | DYZ17 | * | |||||
13684821-G-T | 11529145-G-T | DYZ17 | * | |||||
14027913-T-TG | 11907207-T-TG | * | ||||||
22275159-G-C | 20113273-G-C | DYZ19 | * | |||||
22316023-G-T | 20154137-G-T | DYZ19 | * | |||||
21318477-C-A | 19156591-C-A | 19×A | ** | |||||
8568450-G-T | 8700409-G-T | ** | ||||||
22868312-AC-A | 20706426-AC-A | ** | ||||||
13468583-G-A | 11312907-G-A | ** | ||||||
2903359-TTC-T | 3035318-TTC-T | ** | ||||||
7381816-T-A | 7513775-T-A | ** | ||||||
15347080-C-A | 13235199-C-A | ** | ||||||
16250624-G-T | 14138744-G-T | BY1237 Y199 | 28×T | ** | ||||
3332233-TA-T | 3464192-TA-T | 10×A | ** | |||||
13486615-T-A | 11330939-T-A | ** | ||||||
13486598-G-A | 11330922-G-A | ** | ||||||
10945084-A-T | ** | |||||||
10761159-A-T | ** | |||||||
10761165-C-A | ** | |||||||
10761183-C-T | ** | |||||||
8730898-C-A | 8862857-C-A | ** | ||||||
10685532-A-T | ** | |||||||
9516914-A-AT | 9679305-A-AT | 10×T | ** | |||||
28728219-C-A | 26582072-C-A | ** | ||||||
10877811-T-G | ** | |||||||
11677357-G-GTATCA | DYZ17 | ** | ||||||
11677365-TG-T | DYZ17 | ** | ||||||
11677369-A-C | DYZ17 | ** | ||||||
9735605-GT-G | 9897996-GT-G | IR3_Prx | 30×T | ** | ||||
10657242-C-T | ** | |||||||
5852578-C-A | 5984537-C-A | ** | ||||||
10930053-C-A | ** | |||||||
13884174-C-A | 11763468-C-A | ** | ||||||
11011287-A-G | ** | |||||||
15320553-G-A | 13208659-G-A | FTB10900 | ** | |||||
10898865-A-C | ** | |||||||
10800777-C-A | ** | |||||||
13485574-A-T | 11329898-A-T | ** | ||||||
5761291-TA-T | 5893250-TA-T | 8×A | ** | |||||
23476053-C-A | 21314167-C-A | ** | ||||||
13712635-A-C | 11556959-A-C | DYZ17 | ** | |||||
27447462-G-GTT | 25301315-G-GTT | P1_Y2 | ** | |||||
3628378-CGT-C | 3760337-CGT-C | 9×GT | ** | |||||
10691024-C-G | ** | |||||||
10937854-C-A | ** | |||||||
10840054-C-T | ** | |||||||
10930001-T-C | ** | |||||||
24283373-G-T | 22137226-G-T | P3_t1 | ** | |||||
15743698-C-A | 13631818-C-A | ** | ||||||
18263856-CAAAA-C | 16151976-CAAAA-C | 26×A | ** | |||||
13468577-C-G | 11312901-C-G | ** | ||||||
7461779-G-T | 7593738-G-T | IR1_L | ** | |||||
10969951-T-G | ** | |||||||
27699979-G-T | 25553832-G-T | P1_Y2 | ** | |||||
10938389-A-C | ** | |||||||
13468600-C-G | 11312924-C-G | ** | ||||||
13468605-A-G | 11312929-A-G | ** | ||||||
10663628-G-A | ** | |||||||
10808662-A-T | ** | |||||||
8792830-TTTCC-T | 8924789-TTTCC-T | 6×TTCC | ** | |||||
14255088-C-A | 12134382-C-A | ** | ||||||
15940304-C-A | 13828424-C-A | ** | ||||||
4178995-C-A | 4310954-C-A | ** | ||||||
10870248-G-T | ** | |||||||
10825192-T-G | ** | |||||||
10825206-AC-T | ** | |||||||
13803228-C-A | 11682522-C-A | DYZ17 | ** | |||||
10866291-C-A | ** | |||||||
10687289-A-T | ** | |||||||
11022983-A-T | ** | |||||||
10962645-C-A | ** | |||||||
8105396-C-CA | 8237355-C-CA | 10×A | ** | |||||
10630618-CC-A | ** | |||||||
8075991-C-A | 8207950-C-A | ** | ||||||
10785783-G-T | ** | |||||||
10785785-C-T | ** | |||||||
10977100-C-A | ** | |||||||
23126758-C-A | 20964872-C-A | ** | ||||||
10935307-C-A | ** | |||||||
7228491-C-A | 7360450-C-A | ** | ||||||
21135086-G-C | 18973200-G-C | ** | ||||||
21135096-ATT-A | 18973210-ATT-A | 8×T | ** | |||||
24254146-AC-A | 22107999-AC-A | P3_b1 | ** | |||||
23471058-G-A | 21309172-G-A | ** | ||||||
9440271-C-A | 9602662-C-A | ** | ||||||
10817307-C-A | ** | |||||||
4179012-G-T | 4310971-G-T | ** | ||||||
14887841-C-A | 12775907-C-A | ** | ||||||
18631801-C-A | 16519921-C-A | ** | ||||||
26228636-C-A | 24082489-C-A | P1_Y1 | ** | |||||
11014090-C-A | ** | |||||||
10992681-T-C | ** | |||||||
22300826-G-T | 20138940-G-T | DYZ19 | ** | |||||
19727393-T-A | 17615513-T-A | P5_Prx | ** | |||||
10841816-C-A | ** | |||||||
8711335-C-A | 8843294-C-A | ** | ||||||
18086241-C-A | 15974361-C-A | ** | ||||||
10895763-T-G | ** | |||||||
20774944-A-T | 18613058-A-T | P4_Prx | ** | |||||
7767658-A-AT | 7899617-A-AT | 8×T | ** | |||||
10624884-T-A | ** | |||||||
13928026-C-A | 11807320-C-A | ** | ||||||
22649582-C-A | 20487696-C-A | ** | ||||||
14808474-C-A | 12696545-C-A | ** | ||||||
21346293-C-A | 19184407-C-A | ** | ||||||
2767714-C-A | 2899673-C-A | ** | ||||||
16988407-C-A | 14876527-C-A | ** | ||||||
13254622-A-C | 11098946-A-C | ** | ||||||
14702128-C-A | 12590194-C-A | ** | ||||||
2873838-C-A | 3005797-C-A | ** | ||||||
10942131-C-A | ** | |||||||
22970274-C-A | 20808388-C-A | ** | ||||||
9056439-C-A | ** | |||||||
14753223-C-A | 12641292-C-A | ** | ||||||
14049926-C-A | 11929220-C-A | ** | ||||||
15366927-C-A | 13255047-C-A | ** | ||||||
8078642-G-T | 8210601-G-T | ** | ||||||
21072235-C-A | 18910349-C-A | ** | ||||||
7087877-T-C | 7219836-T-C | ** | ||||||
15735702-C-A | 13623822-C-A | ** | ||||||
19479973-C-A | 17368093-C-A | ** | ||||||
7052978-C-A | 7184937-C-A | ** | ||||||
21505554-C-A | 19343668-C-A | ** | ||||||
14384355-G-T | 12263651-G-T | ** | ||||||
15777073-C-A | 13665193-C-A | ** | ||||||
28478988-C-A | 26332841-C-A | ** | ||||||
18381705-C-A | 16269825-C-A | P6_Gap | ** | |||||
16943408-TTA-T | 14831528-TTA-T | ** | ||||||
19496123-C-A | 17384243-C-A | ** | ||||||
56841871-C-A | ** | |||||||
21183622-C-A | 19021736-C-A | ** | ||||||
10940860-C-A | ** | |||||||
10801938-T-G | ** | |||||||
8878799-G-T | 9010758-G-T | ** | ||||||
4703231-C-A | 4835190-C-A | ** | ||||||
8762017-C-A | 8893976-C-A | ** | ||||||
15941403-C-A | 13829523-C-A | ** | ||||||
20842639-C-A | 18680753-C-A | P4_Dst | ** | |||||
10663631-C-A | ** | |||||||
16186527-A-C | 14074647-A-C | ** | ||||||
10682741-C-A | ** | |||||||
18195152-C-A | 16083272-C-A | ** | ||||||
18130461-C-A | 16018581-C-A | ** | ||||||
13698815-A-C | 11543139-A-C | DYZ17 | ** | |||||
17718484-T-C | 15606604-T-C | ** | ||||||
14607829-C-A | 12496031-C-A | ** | ||||||
21334564-C-A | 19172678-C-A | ** | ||||||
23066889-C-A | 20905003-C-A | ** | ||||||
10847471-T-C | ** | |||||||
10057280-C-A | 10219671-C-A | ** | ||||||
2672166-G-T | 2804125-G-T | ** | ||||||
2680132-C-T | 2812091-C-T | ** | ||||||
2834248-C-A | 2966207-C-A | ** | ||||||
2873931-A-C | 3005890-A-C | ** | ||||||
2981332-A-G | 3113291-A-G | ** | ||||||
2991480-A-G | 3123439-A-G | ** | ||||||
2991593-C-A | 3123552-C-A | ** | ||||||
3218529-T-G | 3350488-T-G | ** | ||||||
3296399-C-A | 3428358-C-A | ** | ||||||
3436253-C-A | 3568212-C-A | ** | ||||||
3656235-C-A | 3788194-C-A | ** | ||||||
3734724-C-A | 3866683-C-A | ** | ||||||
3763516-C-A | 3895475-C-A | ** | ||||||
3936454-G-T | 4068413-G-T | ** | ||||||
3975718-G-T | 4107677-G-T | ** | ||||||
4100864-C-A | 4232823-C-A | ** | ||||||
4135889-C-A | 4267848-C-A | ** | ||||||
4321901-G-T | 4453860-G-T | ** | ||||||
4609933-C-A | 4741892-C-A | ** | ||||||
4672607-G-T | 4804566-G-T | ** | ||||||
4899592-G-T | 5031551-G-T | ** | ||||||
4946349-G-T | 5078308-G-T | ** | ||||||
5091595-C-A | 5223554-C-A | ** | ||||||
5125917-C-A | 5257876-C-A | ** | ||||||
5146484-C-A | 5278443-C-A | ** | ||||||
5194674-G-T | 5326633-G-T | ** | ||||||
5323196-C-A | 5455155-C-A | ** | ||||||
5409367-G-T | 5541326-G-T | ** | ||||||
5644705-A-G | 5776664-A-G | ** | ||||||
5698872-G-T | 5830831-G-T | ** | ||||||
5698877-T-G | 5830836-T-G | ** | ||||||
5758365-G-T | 5890324-G-T | ** | ||||||
5775393-C-A | 5907352-C-A | ** | ||||||
5852640-A-C | 5984599-A-C | ** | ||||||
6080638-TTCTC-T | 6212597-TTCTC-T | 9×TC | ** | |||||
6120197-T-C | 6252156-T-C | ** | ||||||
6144676-A-G | 6276635-A-G | IR3_Dst | ** | |||||
6287042-G-T | 6419001-G-T | IR3_Dst | ** | |||||
6455415-G-T | 6587374-G-T | ** | ||||||
6582415-C-G | 6714374-C-G | ** | ||||||
6713365-G-T | 6845324-G-T | ** | ||||||
6887539-C-A | 7019498-C-A | ** | ||||||
7008754-C-A | 7140713-C-A | ** | ||||||
7087896-C-T | 7219855-C-T | ** | ||||||
7101481-C-A | 7233440-C-A | ** | ||||||
7108331-T-G | 7240290-T-G | ** | ||||||
7123691-C-A | 7255650-C-A | ** | ||||||
7138822-C-A | 7270781-C-A | ** | ||||||
7153886-C-A | 7285845-C-A | ** | ||||||
7195293-G-T | 7327252-G-T | ** | ||||||
7218279-G-T | 7350238-G-T | ** | ||||||
7221286-C-A | 7353245-C-A | ** | ||||||
7247524-C-A | 7379483-C-A | ** | ||||||
7311661-C-A | 7443620-C-A | ** | ||||||
7322529-C-A | 7454488-C-A | ** | ||||||
7333122-C-A | 7465081-C-A | FT121338 | ** | |||||
7340859-G-T | 7472818-G-T | ** | ||||||
7355943-C-A | 7487902-C-A | ** | ||||||
7359329-T-G | 7491288-T-G | ** | ||||||
7363242-T-A | 7495201-T-A | ** | ||||||
7371751-C-A | 7503710-C-A | Y84015 | ** | |||||
7381806-T-C | 7513765-T-C | ** | ||||||
7381828-G-C | 7513787-G-C | ** | ||||||
7412857-C-A | 7544816-C-A | FTB35406 | ** | |||||
7646519-G-T | 7778478-G-T | ** | ||||||
7649243-C-A | 7781202-C-A | ** | ||||||
7706290-C-A | 7838249-C-A | ** | ||||||
7717874-C-A | 7849833-C-A | ** | ||||||
8070047-C-A | 8202006-C-A | ** | ||||||
8072877-G-A | 8204836-G-A | FT89090 | ** | |||||
8163840-C-A | 8295799-C-A | ** | ||||||
8166635-T-C | 8298594-T-C | ** | ||||||
8282302-C-A | 8414261-C-A | ** | ||||||
8753853-G-T | 8885812-G-T | ** | ||||||
8855189-C-A | 8987148-C-A | ** | ||||||
9119736-G-C | ** | |||||||
9123406-G-T | ** | |||||||
8987677-C-A | 9150068-C-A | ** | ||||||
9355918-C-A | 9518309-C-A | ** | ||||||
9592988-TTTTTTTGTTTGTG-T | 9755379-TTTTTTTGTTTGTG-T | IR3_Prx | ** | |||||
9742539-G-T | 9904930-G-T | IR3_Prx | ** | |||||
9774405-C-A | 9936796-C-A | ** | ||||||
9847434-A-G | 10009825-A-G | ** | ||||||
9859191-TC-T | 10021582-TC-T | ** | ||||||
9871621-C-A | 10034012-C-A | ** | ||||||
9937018-C-A | 10099409-C-A | ** | ||||||
9979069-T-A | 10141460-T-A | ** | ||||||
10067503-G-A | 10229894-G-A | ** | ||||||
10070069-T-A | 10232460-T-A | ** | ||||||
10654598-C-A | ** | |||||||
10654823-C-A | ** | |||||||
10671017-A-ATTTT | ** | |||||||
10773984-C-A | ** | |||||||
10783126-C-A | ** | |||||||
10800250-T-G | ** | |||||||
10800264-G-A | ** | |||||||
10801874-T-A | ** | |||||||
10807945-C-A | ** | |||||||
10817403-C-A | ** | |||||||
10827432-C-T | FT432981 | ** | ||||||
10840391-A-G | ** | |||||||
10840756-C-A | ** | |||||||
10840874-C-A | ** | |||||||
10841326-C-A | ** | |||||||
10847454-C-T | ** | |||||||
10847464-T-C | ** | |||||||
10847466-C-G | ** | |||||||
10847474-C-T | ** | |||||||
10849716-T-G | ** | |||||||
10857797-C-A | ** | |||||||
10870189-C-A | ** | |||||||
10880725-T-A | ** | |||||||
10906812-G-T | ** | |||||||
10925244-G-A | ** | |||||||
10929984-C-CGTTTCATTCTGTACT | ** | |||||||
10930011-C-TGCCAG | ** | |||||||
10930059-C-T | ** | |||||||
10937594-C-A | ** | |||||||
10949125-C-A | ** | |||||||
10954130-A-G | ** | |||||||
10955401-C-T | ** | |||||||
10964040-T-C | ** | |||||||
10980350-C-G | ** | |||||||
11011008-C-A | ** | |||||||
11022963-AT-A | ** | |||||||
11031250-C-A | ** | |||||||
13214399-C-A | 11058723-C-A | ** | ||||||
13447181-G-T | 11291505-G-T | ** | ||||||
13454403-A-T | 11298727-A-T | ** | ||||||
13592543-C-A | 11436867-C-A | ** | ||||||
11646633-G-T | DYZ17 | ** | ||||||
11651476-G-T | DYZ17 | ** | ||||||
13801391-G-T | 11680685-G-T | DYZ17 | ** | |||||
13947649-C-A | 11826943-C-A | ** | ||||||
14142431-C-A | 12021725-C-A | ** | ||||||
14272583-C-A | 12151877-C-A | ** | ||||||
14330747-C-A | 12210041-C-A | ** | ||||||
14408632-C-A | 12287930-C-A | ** | ||||||
14452185-C-A | 12331458-C-A | ** | ||||||
14490881-C-A | 12370150-C-A | ** | ||||||
12374988-C-T | ** | |||||||
14512426-G-A | 12400631-G-A | ** | ||||||
14516775-C-A | 12404976-C-A | ** | ||||||
14553042-C-A | 12441243-C-A | ** | ||||||
14564845-T-G | 12453045-T-G | ** | ||||||
14586783-C-A | 12474983-C-A | ** | ||||||
14681777-C-A | 12569843-C-A | ** | ||||||
14689070-C-A | 12577136-C-A | ** | ||||||
14724584-C-A | 12612652-C-A | ** | ||||||
14811009-G-A | 12699080-G-A | ** | ||||||
14826567-T-TA | 12714634-T-TA | ** | ||||||
14837008-AT-A | 12725075-AT-A | 8×T | ** | |||||
14900800-C-A | 12788867-C-A | ** | ||||||
15321494-C-A | 13209612-C-A | ** | ||||||
15376980-G-T | 13265100-G-T | ** | ||||||
15391189-C-A | 13279309-C-A | ** | ||||||
15584661-C-A | 13472781-C-A | ** | ||||||
15680078-A-C | 13568198-A-C | ** | ||||||
15701178-G-T | 13589298-G-T | ** | ||||||
15823198-G-C | 13711318-G-C | ** | ||||||
15880073-TTATAAGA-T | 13768193-TTATAAGA-T | ** | ||||||
15901234-C-A | 13789354-C-A | ** | ||||||
15901493-C-A | 13789613-C-A | ** | ||||||
15926739-T-G | 13814859-T-G | ** | ||||||
15926789-T-G | 13814909-T-G | ** | ||||||
16012469-G-T | 13900589-G-T | ** | ||||||
16232420-C-A | 14120540-C-A | ** | ||||||
16434627-C-A | 14322747-C-A | ** | ||||||
16445955-C-A | 14334075-C-A | ** | ||||||
16489838-T-C | 14377958-T-C | FT96700 | ** | |||||
16577733-C-A | 14465853-C-A | ** | ||||||
16603412-C-A | 14491532-C-A | ** | ||||||
16603437-T-C | 14491557-T-C | ** | ||||||
16625063-A-C | 14513183-A-C | ** | ||||||
16631649-C-A | 14519769-C-A | ** | ||||||
16686068-C-A | 14574188-C-A | ** | ||||||
16867549-C-A | 14755669-C-A | ** | ||||||
16943388-C-A | 14831508-C-A | ** | ||||||
16962818-G-A | 14850938-G-A | ** | ||||||
17033851-C-A | 14921971-C-A | ** | ||||||
17039118-C-A | 14927238-C-A | ** | ||||||
17177206-G-T | 15065326-G-T | ** | ||||||
17301258-AAAAG-A | 15189378-AAAAG-A | ** | ||||||
17353651-G-A | 15241771-G-A | ** | ||||||
17353682-A-C | 15241802-A-C | ** | ||||||
17353683-G-A | 15241803-G-A | ** | ||||||
17372063-C-A | 15260183-C-A | ** | ||||||
17397248-A-C | 15285368-A-C | ** | ||||||
17397253-A-ATT | 15285373-A-ATT | 16×T | ** | |||||
17498854-G-T | 15386974-G-T | ** | ||||||
17504349-C-A | 15392469-C-A | ** | ||||||
17538394-T-A | 15426514-T-A | ** | ||||||
17622716-C-A | 15510836-C-A | ** | ||||||
17869551-C-A | 15757671-C-A | ** | ||||||
17943996-C-A | 15832116-C-A | ** | ||||||
17947004-C-T | 15835124-C-T | ** | ||||||
17978486-C-A | 15866606-C-A | ** | ||||||
17994847-G-T | 15882967-G-T | P7_Prx | ** | |||||
18020402-T-G | 15908522-T-G | ** | ||||||
18139593-G-C | 16027713-G-C | ** | ||||||
18147633-C-A | 16035753-C-A | ** | ||||||
18385187-A-G | 16273307-A-G | P6_Gap | ** | |||||
18389306-A-C | 16277426-A-C | P6_Gap | ** | |||||
18397428-C-A | 16285548-C-A | P6_Gap | ** | |||||
18704207-G-A | 16592327-G-A | ** | ||||||
18736175-C-A | 16624295-C-A | ** | ||||||
18892053-C-A | 16780173-C-A | ** | ||||||
18948279-C-A | 16836399-C-A | ** | ||||||
18982547-CAAAAAAAAA-C | 16870667-CAAAAAAAAA-C | 39×A | ** | |||||
19075549-C-A | 16963669-C-A | ** | ||||||
19146691-C-T | 17034811-C-T | ** | ||||||
19322437-C-A | 17210557-C-A | ** | ||||||
19340600-C-A | 17228720-C-A | ** | ||||||
19378025-A-G | 17266145-A-G | ** | ||||||
19389564-C-A | 17277684-C-A | ** | ||||||
19477486-G-T | 17365606-G-T | ** | ||||||
19509733-C-A | 17397853-C-A | ** | ||||||
19668717-G-T | 17556837-G-T | P5_Prx | ** | |||||
20084465-C-A | 17972585-C-A | P5_Dst | ** | |||||
21048168-C-A | 18886282-C-A | ** | ||||||
21135091-A-G | 18973205-A-G | ** | ||||||
21379388-G-T | 19217502-G-T | ** | ||||||
21394211-C-A | 19232325-C-A | ** | ||||||
21437529-T-C | 19275643-T-C | ** | ||||||
21534619-A-G | 19372733-A-G | ** | ||||||
21672294-C-A | 19510408-C-A | ** | ||||||
21691054-C-A | 19529168-C-A | ** | ||||||
21713364-A-G | 19551478-A-G | ** | ||||||
21713407-C-T | 19551521-C-T | ** | ||||||
21713419-A-G | 19551533-A-G | ** | ||||||
21722221-C-A | 19560335-C-A | ** | ||||||
21951963-C-A | 19790077-C-A | ** | ||||||
21953171-C-A | 19791285-C-A | ** | ||||||
22058415-AGCAT-A | 19896529-AGCAT-A | ** | ||||||
22207280-G-A | 20045394-G-A | ** | ||||||
22300879-A-G | 20138993-A-G | DYZ19 | ** | |||||
22647488-A-T | 20485602-A-T | ** | ||||||
22706875-C-A | 20544989-C-A | ** | ||||||
22723403-A-T | 20561517-A-T | ** | ||||||
22775966-C-A | 20614080-C-A | ** | ||||||
22839725-C-A | 20677839-C-A | ** | ||||||
22886342-C-A | 20724456-C-A | ** | ||||||
22965197-C-A | 20803311-C-A | ** | ||||||
22998693-G-T | 20836807-G-T | ** | ||||||
23059560-G-T | 20897674-G-T | ** | ||||||
23204382-G-A | 21042496-G-A | ** | ||||||
23311025-C-A | 21149139-C-A | ** | ||||||
23435176-TTTGGG-T | 21273290-TTTGGG-T | ** | ||||||
23465514-G-T | 21303628-G-T | ** | ||||||
23475486-C-T | 21313600-C-T | ** | ||||||
23522667-C-A | 21360781-C-A | ** | ||||||
23625774-T-A | 21463888-T-A | ** | ||||||
23838015-G-T | 21676129-G-T | ** | ||||||
21753059-C-A | ** | |||||||
24502298-C-A | 22356151-C-A | ** | ||||||
27860817-A-G | 25714670-A-G | P1_Y2 | ** | |||||
27967386-C-A | 25821239-C-A | P1_Y2 | ** | |||||
27967386-CAT-C | 25821239-CAT-C | P1_Y2 | ** | |||||
28514601-C-G | 26368454-C-G | ** | ||||||
28598556-C-A | 26452409-C-A | ** | ||||||
28633615-G-C | 26487468-G-C | ** | ||||||
28762338-C-A | 26616191-C-A | ** | ||||||
56763477-G-A | ** | |||||||
56841517-C-A | ** | |||||||
56849659-G-T | ** | |||||||
56857905-G-T | ** | |||||||
21261826-T-TA | 19099940-T-TA | 26×A | *** | |||||
7307494-T-TAG | 7439453-T-TAG | 11×AG | *** | |||||
8757820-A-AT | 8889779-A-AT | 10×T | *** | |||||
2682008-TA-T | 2813967-TA-T | 10×A | *** | |||||
13486559-A-T | 11330883-A-T | *** | ||||||
8703659-AT-A,ATT | 8835618-AT-A,ATT | 18×T | *** | |||||
15324319-CTT-C,CT | 13212437-CTT-C,CT | 25×T | *** | |||||
28545438-C-A | 26399291-C-A | *** | ||||||
10685586-G-C | *** | |||||||
15581093-CTT-C,CT | 13469213-CTT-C,CT | 16×T | *** | |||||
10685529-C-T | *** | |||||||
10978773-C-A | *** | |||||||
15365934-G-T | 13254054-G-T | *** | ||||||
28784420-G-A | 26638273-G-A | *** | ||||||
15392810-TAA-T | 13280930-TAA-T | 13×A | *** | |||||
21961392-C-A | 19799506-C-A | *** | ||||||
5455029-C-A | 5586988-C-A | *** | ||||||
10682547-C-A | BY83692 | *** | ||||||
10934737-T-A,C | *** | |||||||
10934765-A-G,T | *** | |||||||
13468609-G-T | 11312933-G-T | *** | ||||||
15495460-CAAAA-C,CAAA | 13383580-CAAAA-C,CAAA | 16×A | *** | |||||
18923983-G-GAA | 16812103-G-GAA | 22×A | *** | |||||
10880242-C-A | *** | |||||||
56850754-C-CT | *** | |||||||
16989346-C-A | 14877466-C-A | *** | ||||||
22200355-CAAAA-C | 20038469-CAAAA-C | 13×A | *** | |||||
14096618-TA-T,TAA | 11975912-TA-T,TAA | 17×A | *** | |||||
11022956-CCACT-C | *** | |||||||
11022939-C-A | *** | |||||||
13255615-C-A | 11099939-C-A | *** | ||||||
10624851-A-T | *** | |||||||
10624852-T-C | *** | |||||||
3622072-C-A | 3754031-C-A | *** | ||||||
22747717-C-CTT | 20585831-C-CTT | 14×T | *** | |||||
10667788-T-C | *** | |||||||
16575396-G-GA | 14463516-G-GA | 10×A | *** | |||||
21187145-CT-C | 19025259-CT-C | 9×T | *** | |||||
8139737-C-A | 8271696-C-A | *** | ||||||
18401507-C-A | 16289627-C-A | P6_Gap | *** | |||||
10678653-C-A | *** | |||||||
19345954-C-A | 17234074-C-A | *** | ||||||
15744559-C-A | 13632679-C-A | *** | ||||||
56840137-C-A | *** | |||||||
15864264-C-A | 13752384-C-A | *** | ||||||
14825145-T-A | 12713212-T-A | *** | ||||||
9787241-C-A | 9949632-C-A | *** | ||||||
17490867-C-A | 15378987-C-A | *** | ||||||
3626700-A-G | 3758659-A-G | *** | ||||||
6146470-T-C | 6278429-T-C | IR3_Dst | *** | |||||
6427254-C-A | 6559213-C-A | *** | ||||||
6989107-TAAAAA-T,TAAA | 7121066-TAAAAA-T,TAAA | 23×A | *** | |||||
7164616-G-T | 7296575-G-T | *** | ||||||
7184066-C-A | 7316025-C-A | *** | ||||||
7349515-C-A | 7481474-C-A | *** | ||||||
7770290-G-T | 7902249-G-T | *** | ||||||
7976304-A-G | 8108263-A-G | *** | ||||||
8234398-C-A | 8366357-C-A | *** | ||||||
8408491-C-A | 8540450-C-A | *** | ||||||
8513512-C-A | 8645471-C-A | *** | ||||||
8699871-C-A | 8831830-C-A | *** | ||||||
8801442-C-A | 8933401-C-A | *** | ||||||
9306671-C-A | 9469062-C-A | *** | ||||||
9777568-A-G | 9939959-A-G | *** | ||||||
10798791-C-A | *** | |||||||
10884676-C-A | *** | |||||||
10965551-CTCCATTCCATTCCATTCCATTCCAT-C | *** | |||||||
10978818-ATTTCTTTCT-A | *** | |||||||
11021024-C-A | *** | |||||||
13227884-G-T | 11072208-G-T | *** | ||||||
11669680-G-T | DYZ17 | *** | ||||||
13919377-A-G | 11798671-A-G | *** | ||||||
14215718-C-A | 12095012-C-A | *** | ||||||
14424178-G-T | 12303453-G-T | *** | ||||||
14426037-AAT-A,AATAT | 12305312-AAT-A,AATAT | 8×AT | *** | |||||
14475783-T-C | 12355052-T-C | *** | ||||||
14718817-G-T | 12606885-G-T | *** | ||||||
14807834-C-A | 12695905-C-A | *** | ||||||
15219585-C-A | 13107671-C-A | *** | ||||||
15348220-A-G | 13236339-A-G | *** | ||||||
15481318-C-T | 13369438-C-T | *** | ||||||
15508894-G-A | 13397014-G-A | *** | ||||||
15661592-C-A | 13549712-C-A | *** | ||||||
15731712-C-A | 13619832-C-A | *** | ||||||
15739265-C-A | 13627385-C-A | *** | ||||||
15791420-A-G | 13679540-A-G | *** | ||||||
15976272-C-A | 13864392-C-A | *** | ||||||
16236284-G-T | 14124404-G-T | *** | ||||||
16333714-T-G | 14221834-T-G | *** | ||||||
16813808-C-A | 14701928-C-A | *** | ||||||
17173650-C-A | 15061770-C-A | *** | ||||||
18005760-G-A | 15893880-G-A | P7_Gap | *** | |||||
18554008-T-TA | 16442128-T-TA | 8×A | *** | |||||
18600181-C-A | 16488301-C-A | *** | ||||||
18841225-C-A | 16729345-C-A | *** | ||||||
18884523-C-A | 16772643-C-A | *** | ||||||
21082172-C-A | 18920286-C-A | *** | ||||||
21719909-C-A | 19558023-C-A | *** | ||||||
22098125-C-A | 19936239-C-A | *** | ||||||
22159706-C-A | 19997820-C-A | *** | ||||||
23132126-C-A | 20970240-C-A | *** | ||||||
23378990-C-A | 21217104-C-A | *** | ||||||
23392809-C-A | 21230923-C-A | *** | ||||||
23465910-G-T | 21304024-G-T | *** | ||||||
23534343-T-C | 21372457-T-C | *** | ||||||
23561564-C-A | 21399678-C-A | *** | ||||||
28645684-C-A | 26499537-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.