Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > FGC11134 > ZZ44 > ZZ46

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
B84593
22310280-A-C 20148394-A-C DYZ19 A*
24636349-C-CT 22490202-C-CT P3_t2 17×TA*
6249782-C-T 6381741-C-T IR3_Dst A*
6295131-A-G 6427090-A-G IR3_Dst A*
20704159-T-C 18542273-T-C P4_Prx A*
18375528-G-A 16263648-G-A P6_Prx A*
21623520-A-AAC 19461634-A-AAC 19×ACA*
16916334-G-T 14804454-G-T BY111073 YY+
21759694-T-G 19597808-T-G BY135245 YY+
9406274-T-C 9568665-T-C BY79268 YY+
9160386-A-C 9322777-A-C BY78657 +
22474823-A-T 20312937-A-T BY34074 DYZ19 +
13810632-T-G 11689926-T-G BY90224 +
20817776-G-A 18655890-G-A Y105199 P4_Gap +
19020478-C-A 16908598-C-A BY125553 YY+
16497533-G-A 14385653-G-A BY108222 YY+
8486577-C-T 8618536-C-T BY73303 YY+
7801105-C-T 7933064-C-T BY67771 YY+
16255794-C-T 14143914-C-T BY106413 YY+
15980075-A-T 13868195-A-T BY105279 YY+
2862254-T-A 2994213-T-A BY56887 YY+
2882493-G-T 3014452-G-T BY57038 YY+
22439840-G-T 20277954-G-T DYZ19 +
17023231-T-G 14911351-T-G BY111821 YY+
6156564-C-A 6288523-C-A BY59364 IR3_Dst +
17132401-AATAACC-A 15020521-AATAACC-A +
17704129-A-G 15592249-A-G BY116789 YY+
18870383-C-A 16758503-C-A BY124409 YY+
19061879-C-A 16949999-C-A BY125937 YY+
16850522-C-T 14738642-C-T BY15276ZS7222 BY15276 YY+
18160992-C-A 16049112-C-A YY+
18395723-T-A 16283843-T-A BY31276 P6_Gap 27×TA+
18789253-C-T 16677373-C-T BY123924 YY+
18117804-T-G 16005924-T-G BY120215 YY+
17340711-C-G 15228831-C-G BY113984 YY+
24278187-A-C 22132040-A-C P3_b1 *
20105742-T-TTATCTATCTATC 17993862-T-TTATCTATCTATC P5_Dst 14×TATC*
12384494-GTGGATGGATGGA-G *
24522166-A-ATC 22376019-A-ATC 14×TC*
22255611-A-T 20093725-A-T DYZ19 *
6918869-TACAC-T 7050828-TACAC-T 18×AC*
28808181-A-T 26662034-A-T *
7088084-A-G 7220043-A-G **
6165662-CAAA-C 6297621-CAAA-C IR3_Dst 13×A**
6201828-A-G 6333787-A-G IR3_Dst **
7084584-C-A 7216543-C-A **
6317853-A-T 6449812-A-T IR3_Dst **
7019212-T-G 7151171-T-G **
6317869-A-T 6449828-A-T IR3_Dst **
10686657-A-G **
6786704-C-A 6918663-C-A **
6751966-C-A 6883925-C-A **
10686641-CATTCT-C **
6317879-A-T 6449838-A-T IR3_Dst **
6317877-A-T 6449836-A-T IR3_Dst **
10686622-A-C **
7269977-C-A 7401936-C-A **
7138421-A-C 7270380-A-C **
8973924-G-T 9136315-G-T **
9915970-C-T 10078361-C-T **
9915979-A-G 10078370-A-G **
9918977-C-A 10081368-C-A **
9915957-AT-A 10078348-AT-A **
9993343-C-A 10155734-C-A **
10026295-C-A 10188686-C-A 12×T**
10655086-TTCC-T **
9153526-T-C 9315917-T-C **
8786678-G-A 8918637-G-A **
7197535-C-A 7329494-C-A **
8736813-C-A 8868772-C-A **
8080319-G-T 8212278-G-T **
8076242-A-C 8208201-A-C **
7990440-C-A 8122399-C-A **
9915962-C-G 10078353-C-G **
7248193-C-A 7380152-C-A **
7242526-T-A 7374485-T-A **
7235196-CA-C 7367155-CA-C **
20714944-G-T 18553058-G-T P4_Prx **
3026251-A-T 3158210-A-T **
5769709-G-C 5901668-G-C **
9639133-C-A 9801524-C-A IR3_Prx **
24673186-C-T 22527039-C-T P3_b2 **
6791633-C-A 6923592-C-A **
21744008-T-C 19582122-T-C **
8379564-C-A 8511523-C-A **
14391682-C-A 12270978-C-A **
8170447-C-A 8302406-C-A **
22253121-G-GT 20091235-G-GT DYZ19 **
18263453-C-A 16151573-C-A **
10749087-C-A **
2916240-G-GT 3048199-G-GT 11×T**
10749082-C-A **
21895564-C-A 19733678-C-A **
22001822-A-T 19839936-A-T **
10799620-C-G **
13854431-C-A 11733725-C-A **
10987993-C-A **
19438615-A-G 17326735-A-G **
10821951-CTAT-C **
10889229-A-C **
14562920-C-A 12451120-C-A **
4965185-TAA-T 5097144-TAA-T 20×A**
5644614-G-T 5776573-G-T **
4527359-C-A 4659318-C-A **
5612801-A-C 5744760-A-C **
5562626-T-A 5694585-T-A **
5523576-C-A 5655535-C-A **
5231911-T-A 5363870-T-A **
5231890-CTTT-C 5363849-CTTT-C 22×T**
5146489-C-A 5278448-C-A **
5093296-C-A 5225255-C-A **
5073558-C-A 5205517-C-A **
3922945-A-C 4054904-A-C **
7330316-C-A 7462275-C-A **
21211229-G-T 19049343-G-T **
3627735-GGAAAA-G 3759694-GGAAAA-G **
3020837-T-C 3152796-T-C **
2853568-C-A 2985527-C-A **
10983197-A-G **
10918352-G-T **
19337633-C-CTT 17225753-C-CTT 22×T**
4069592-C-A 4201551-C-A **
4889896-C-A 5021855-C-A **
10693933-C-A **
10924337-GACTCT-G **
10752861-G-T **
14867092-CTTTTTT-C 12755162-CTTTTTT-C 17×T**
16355083-T-A 14243203-T-A **
16336921-G-TT 14225041-G-TT **
16008096-G-A 13896216-G-A **
19692985-A-C 17581105-A-C P5_Prx **
15652823-C-A 13540943-C-A **
15596015-C-A 13484135-C-A **
15468331-G-A 13356451-G-A **
15342614-A-C 13230733-A-C **
15201343-C-A 13089429-C-A **
14755734-C-A 12643803-C-A **
16437476-C-A 14325596-C-A **
14701223-A-G 12589289-A-G **
14563504-T-A 12451704-T-A **
14539495-C-G 12427696-C-G **
14527058-A-T 12415259-A-T **
14527035-C-A 12415236-C-A **
14509997-C-A 12398202-C-A **
14174878-G-T 12054172-G-T **
14032477-C-A 11911771-C-A **
13962269-C-A 11841563-C-A **
16429237-T-C 14317357-T-C **
16462486-G-T 14350606-G-T **
13936309-G-T 11815603-G-T **
17147457-TTTTC-T 15035577-TTTTC-T **
19016189-C-A 16904309-C-A **
19016187-C-A 16904307-C-A **
19132557-C-A 17020677-C-A **
18190161-C-A 16078281-C-A **
17547950-C-A 15436070-C-A **
17546212-A-C 15434332-A-C **
17518772-T-G 15406892-T-G **
17374289-G-C 15262409-G-C **
17199445-C-A 15087565-C-A **
17104194-C-A 14992314-C-A **
16474746-T-G 14362866-T-G **
16720004-T-A 14608124-T-A **
16704890-T-G 14593010-T-G **
16704887-G-C 14593007-G-C **
16704871-T-A 14592991-T-A **
16704847-G-T 14592967-G-T **
16704837-T-G 14592957-T-G **
16631682-C-A 14519802-C-A **
16617771-G-T 14505891-G-T **
16577619-C-A 14465739-C-A **
19216313-C-A 17104433-C-A **
13938582-T-C 11817876-T-C **
13929278-T-C 11808572-T-C **
10778610-G-T **
13718495-C-A 11562819-C-A **
10949052-A-C **
10949047-G-C **
10949030-T-C **
10941592-C-A **
10940747-C-A **
10937435-AATTCCATTCC-A **
10924410-T-C **
10924393-A-G **
10924378-A-G **
20045195-C-A 17933315-C-A P5_Prx **
10949061-A-T **
10880291-CCATA-C **
10868667-C-A **
10868363-C-A **
10849791-A-G **
10837849-T-G **
10837845-C-T **
10837832-AT-A **
10807469-G-T **
20641715-G-A 18479829-G-A P4_Prx **
10778806-G-T **
10949057-C-T **
10949070-A-C **
13914576-A-C 11793870-A-C **
13214643-A-C 11058967-A-C **
13885752-C-A 11765046-C-A **
13846784-C-A 11726078-C-A **
13821418-G-A 11700712-G-A **
13718484-G-T 11562808-G-T **
13488687-G-C 11333011-G-C **
13488676-G-A 11333000-G-A **
19739405-T-G 17627525-T-G P5_Prx **
13421160-T-C 11265484-T-C **
13228214-A-C 11072538-A-C **
13214621-A-C 11058945-A-C **
10963569-C-T **
11034030-G-T **
11015918-C-A **
11015905-T-C **
11015893-C-CATCAG **
11015882-C-A **
10989144-T-TCTAAC **
10986449-C-T **
10976304-C-A **
10971890-T-A **
10964606-C-A **
56830150-T-C **
56877723-G-T **
14354498-C-A 12233793-C-A **
11001967-C-T **
23787081-C-A 21625195-C-A **
24240580-G-A 22094433-G-A P3_b1 **
10987169-CTCCAT-C **
14887925-A-AT 12775991-A-AT 10×T**
17597744-GAA-G 15485864-GAA-G 14×A**
24267223-G-GCGCA 22121076-G-GCGCA P3_b1 15×CA**
10849205-C-T **
10849197-A-G **
10849195-G-C **
10849150-C-A **
20848064-GT-G 18686178-GT-G P4_Dst **
11003780-C-A **
10925672-C-CT **
10925669-CA-C **
13488704-T-A 11333028-T-A **
10746998-C-A **
10746964-A-T **
9979151-C-A 10141542-C-A **
13488713-GCCA-G 11333037-GCCA-G **
10924379-C-T **
10763288-T-A **
10843020-C-A **
23786342-C-T 21624456-C-T **
10755392-ATCTCT-A **
13457810-C-G 11302134-C-G **
23439910-T-G 21278024-T-G F26077 **
10993567-T-C **
22011557-CAAAA-C 19849671-CAAAA-C 21×A**
5426425-C-A 5558384-C-A **
10821947-CTT-C **
10988545-C-T **
10849819-T-C BY83909 **
10849793-C-A **
10849792-T-G **
10849784-C-G **
10849741-C-A **
10844160-T-C **
23579240-A-G 21417354-A-G **
9959883-A-AAT 10122274-A-AAT **
10982286-G-T **
10686584-T-A **
19622065-C-A 17510185-C-A P5_Prx **
23475478-T-G 21313592-T-G **
13217484-A-T 11061808-A-T **
10951051-A-T **
13865589-C-A 11744883-C-A **
23825062-ATAT-A 21663176-ATAT-A **
22069581-C-A 19907695-C-A **
10801693-A-C **
13457781-G-GGGTT 11302105-G-GGGTT **
13457724-TC-T 11302048-TC-T **
28699104-C-A 26552957-C-A **
58862697-T-C 56728174-A-G **
58996556-AG-A 56850409-AG-A **
28591253-C-G 26445106-C-G **
28591286-A-C 26445139-A-C **
59016919-C-T 56870772-C-T **
59012870-C-T 56866723-C-T **
59012773-A-G 56866626-A-G **
58996578-T-C 56850431-T-C **
28655475-C-A 26509328-C-A **
14528411-C-A 12416612-C-A **
3563184-G-A 3695143-G-A **
28567443-C-A 26421296-C-A **
2795554-TA-T 2927513-TA-T **
14097945-A-ATT 11977239-A-ATT 23×T**
19377447-A-G 17265567-A-G **
22447928-C-T 20286042-C-T DYZ19 **
7646930-T-A 7778889-T-A BY13593 Y19291A2368 **
56728148-T-A **
20424788-TGAAGGAAG-T 18262902-TGAAGGAAG-T P5_Dst 14×GAAG**
56843162-G-T **
56866744-G-T **
19377443-A-G 17265563-A-G BY25021 **
18082920-G-T 15971040-G-T 11×T**
28530729-C-A 26384582-C-A **
26055587-A-G 23909440-A-G P1_Y1 **
10667009-C-CATTAG **
26138580-A-T 23992433-A-T P1_Y1 **
26392966-A-T 24246819-A-T P1_Y1 **
10951033-T-C **
10935521-C-T **
6948230-C-A 7080189-C-A **
26393007-AC-A 24246860-AC-A P1_Y1 **
19622095-G-T 17510215-G-T P5_Prx **
10655060-T-TCCA **
10982182-T-C **
10667028-C-GTGTTA **
10667007-T-G **
19022455-C-A 16910575-C-A BY125587 **
27894401-CCTAACTTTTTAA-C 25748254-CCTAACTTTTTAA-C P1_Y2 **
19622087-G-T 17510207-G-T P5_Prx **
10889750-AATTCCATTCC-A **
13710817-G-C 11555141-G-C **
10985321-C-A **
7280952-C-CT 7412911-C-CT 26×T**
15971696-A-C 13859816-A-C **
4388790-G-T 4520749-G-T **
13962042-CTTTTT-C 11841336-CTTTTT-C 28×T**
21170319-G-GT 19008433-G-GT 14×T**
8288815-TAA-T 8420774-TAA-T 23×A**
10990854-T-C **
10993571-A-C **
11003727-C-G **
10849837-T-C **
10750839-T-A **
3563094-TA-T 3695053-TA-T 8×A**
13488738-G-C 11333062-G-C **
13488706-C-T 11333030-C-T **
11014527-T-G **
3834726-C-A 3966685-C-A **
4271307-C-A 4403266-C-A **
15012747-C-T 12900835-C-T **
13488712-C-CTTG 11333036-C-CTTG **
13717516-A-T 11561840-A-T **
10926693-C-A **
10849807-T-A **
10849803-T-A **
10926732-C-T **
3301427-C-CA 3433386-C-CA 12×A**
10926682-G-T **
11015915-T-C **
22634982-C-A 20473096-C-A **
2682732-C-A 2814691-C-A **
10964704-C-A **
11028167-C-A **
10926688-C-G **
7017233-C-A 7149192-C-A **
56834869-C-A **
11015878-C-T **
10990825-C-T **
22103410-A-G 19941524-A-G **
10982270-C-T **
10982234-C-G **
10982176-G-A **
10749079-T-C **
25990668-C-A 23844521-C-A P1_Y1 **
10951052-A-G **
10951024-T-A **
10971939-T-G **
10828805-C-A **
8270079-G-T 8402038-G-T **
18184963-A-AT 16073083-A-AT 8×T**
10799649-A-G **
15280312-C-A 13168411-C-A **
22625032-C-A 20463146-C-A **
10982280-C-A **
19271576-C-A 17159696-C-A **
10849835-C-G **
10849822-T-A **
10773163-T-A **
14499530-A-C 12387735-A-C **
10655989-T-C **
10655998-T-C **
10982206-T-C **
10849814-A-C **
11014529-T-C **
27971752-AAC-A 25825605-AAC-A P1_Y2 **
6682213-T-G 6814172-T-G **
10989109-C-T **
23475487-G-A 21313601-G-A **
16409013-CTTT-C 14297133-CTTT-C 18×T**
15380283-G-T 13268403-G-T **
21945378-C-A 19783492-C-A **
22798006-T-A 20636120-T-A **
10849811-T-A **
5011567-T-A 5143526-T-A **
10849809-T-C **
13453194-C-A 11297518-C-A **
15986617-CTT-C 13874737-CTT-C 12×T**
13710846-C-A 11555170-C-A **
13710831-GGAATA-G 11555155-GGAATA-G **
10982240-A-T **
22833979-T-C 20672093-T-C **
10764535-A-C **
10764523-C-T **
10764519-C-A **
5214363-C-A 5346322-C-A **
14994372-C-A 12882457-C-A **
10655057-T-TCGACTGC **
14546578-C-A 12434779-C-A **
10926700-T-A **
14398256-TTAA-T 12277552-TTAA-T **
10983157-G-A **
10983155-C-A **
5219480-C-A 5351439-C-A **
22640783-A-G 20478897-A-G **
13711400-G-T 11555724-G-T **
18328813-G-T 16216933-G-T P6_Prx **
10926687-C-T **
14176323-C-A 12055617-C-A **
14612846-C-A 12501044-C-A **
16027734-C-A 13915854-C-A **
19520865-AAG-A 17408985-AAG-A **
9956378-AAAG-A 10118769-AAAG-A 8×AAG**
18443494-C-T 16331614-C-T P6_Dst **
10926728-C-G **
10982185-AATCAC-A **
22645782-C-A 20483896-C-A **
13705504-T-A 11549828-T-A **
13711410-G-T 11555734-G-T **
22422796-C-G 20260910-C-G DYZ19 **
22264573-T-A 20102687-T-A DYZ19 ***
28798830-G-T 26652683-G-T ***
20830313-C-A 18668427-C-A P4_Gap ***
22436842-G-T 20274956-G-T DYZ19 ***
22099757-C-A 19937871-C-A ***
28370023-G-GAA 26223876-G-GAA P1_gr2 ***
21443330-C-A 19281444-C-A ***
23512106-C-A 21350220-C-A ***
8644547-C-CTA 8776506-C-CTA 8×TA***
18827890-C-A 16716010-C-A ***
10965576-T-C ***
13461716-G-A 11306040-G-A ***
13489072-G-T 11333396-G-T BY86226 ***
13489064-C-G 11333388-C-G ***
22173954-GAA-G 20012068-GAA-G 16×A***
17332750-CAA-C 15220870-CAA-C 22×A***
13457779-T-A 11302103-T-A ***
13457766-C-G 11302090-C-G ***
13457763-T-C 11302087-T-C ***
23789508-C-A 21627622-C-A ***
13939060-C-A 11818354-C-A ***
16271807-G-GAA 14159927-G-GAA 19×A***
14453709-GAAA-G 12332982-GAAA-G 18×A***
8747696-TGAGAGA-T,TGA 8879655-TGAGAGA-T,TGA 18×GA***
13488655-G-A 11332979-G-A ***
6916924-AT-A 7048883-AT-A 11×T***
23532817-ATG-A 21370931-ATG-A 10×TG***
17408357-C-A 15296477-C-A Z14756 ***
13485649-T-A 11329973-T-A ***
16087962-AAT-A 13976082-AAT-A 8×AT***
8914172-CATT-C 9046131-CATT-C 13×ATT***
17794253-G-GTTCTTTCT 15682373-G-GTTCTTTCT 10×TTCT***
58977398-G-C,T 56831251-G-C,T ***
58977391-A-C 56831244-A-C ***
11014432-A-C,T ***
14774253-CTT-C 12662322-CTT-C 28×T***
16520992-C-CA,CAA 14409112-C-CA,CAA 16×A***
13482956-C-G 11327280-C-G ***
15740594-C-A 13628714-C-A ***
13476989-C-G 11321313-C-G ***
10894021-C-A ***
10790513-C-A ***
10776502-C-CTAATG ***
8914246-G-T 9046205-G-T ***
8751668-C-A 8883627-C-A ***
3716903-C-A 3848862-C-A ***
5911748-C-A 6043707-C-A ***
13983546-A-AGAAGGAAG 11862840-A-AGAAGGAAG 11×GAAG***
10986852-C-A ***
14413210-CAAAA-C,CAAA 12292507-CAAAA-C,CAAA 23×A***
15057738-A-ATT 12945830-A-ATT 18×T***
56829173-CTATTC-C,CCATTA ***
7098983-G-T 7230942-G-T ***
10988695-C-A ***
10965591-T-C ***
10818845-T-C ***
10818844-T-A ***
2979296-CTT-C,CT 3111255-CTT-C,CT 15×T***
14464165-ATT-A,ATTT 12343438-ATT-A,ATTT 18×T***
10955423-G-GTCCTT ***
10818858-C-T ***
13461704-C-G 11306028-C-G ***
11653424-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B84593952388077935627696647
Used in age calculations952388077935627696647
Counts of SNPs2020
Variant counts last updated 2018-06-18 21:27:49.



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