Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > DF21/S192 > FGC3213 > ZZ1 > S3058 > S424 > S426 > S190 > FGC3215 > ZZ23 > Y12464 > ZZ25 > Z29545 > Z29546 > F9497

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
163654
FTDNA
163654
BigY2
163654
Manual
Edits
13449858-A-G 11294182-A-G A*
20129651-T-G 18017771-T-G P5_Dst A*
20129655-T-A 18017775-T-A P5_Dst A*
20129659-C-A 18017779-C-A P5_Dst A*
20333065-C-T 18171179-C-T P5_Dst A*
24890954-A-G 22744807-A-G g1 A*
25925715-T-C 23779568-T-C P1_Y1 A*
8521514-C-T 8653473-C-T BY73645 YY+++
13693369-G-A 11537693-G-A BY88773 +***+
15859345-A-G 13747465-A-G BY104566 YY+++
18826054-G-C 16714174-G-C BY124135 YY+++
18882956-AT-A 16771076-AT-A +++
13312157-AC-A 11156481-AC-A ++
17788138-C-A 15676258-C-A FT111761 Y+
17428554-C-A 15316674-C-A FT111704 Y+
14991021-C-A 12879106-C-A CTS3524 **
14991027-C-G 12879112-C-G CTS3525 **
19720733-G-T 17608853-G-T P5_Prx **
27417747-G-A 25271600-G-A P1_g3 **
25709418-G-T 23563271-G-T P1_b3 **
5225260-GTA-G 5357219-GTA-G **
19126468-G-A 17014588-G-A **
17622770-C-A 15510890-C-A **
21922103-AG-A 19760217-AG-A **
24447175-AAG-A 22301028-AAG-A **
18738188-C-A 16626308-C-A **
22352500-T-G 20190614-T-G DYZ19 **
23723544-C-A 21561658-C-A 27×AT**
22241520-G-C 20079634-G-C DYZ19 **
13940983-C-A 11820277-C-A **
2774871-C-A 2906830-C-A **
10682636-A-G **
10682642-G-C **
13457697-ACTCCA-C 11302021-ACTCCA-C **
10841131-G-C **
2683423-C-A 2815382-C-A **
2708483-C-A 2840442-C-A **
2799549-C-T 2931508-C-T **
2810423-A-T 2942382-A-T **
2810431-G-T 2942390-G-T **
2909579-C-A 3041538-C-A **
2981369-T-G 3113328-T-G **
3061173-C-A 3193132-C-A FT74344 **
3147956-G-A 3279915-G-A **
3229141-A-G 3361100-A-G **
3229147-T-A 3361106-T-A **
3250443-C-A 3382402-C-A **
3250573-C-G 3382532-C-G **
3250716-C-T 3382675-C-T **
3250719-T-G 3382678-T-G **
3250720-G-T 3382679-G-T **
3334524-G-T 3466483-G-T **
3347093-A-G 3479052-A-G **
3389601-G-T 3521560-G-T **
3405570-G-A 3537529-G-A **
3443821-T-C 3575780-T-C **
3559768-T-A 3691727-T-A **
3609805-A-T 3741764-A-T **
3609814-T-G 3741773-T-G **
3626855-T-C 3758814-T-C **
3650905-G-T 3782864-G-T **
3654435-A-G 3786394-A-G **
3679152-G-T 3811111-G-T **
3679214-G-T 3811173-G-T **
3734353-G-A 3866312-G-A **
3812127-C-T 3944086-C-T **
3966916-G-T 4098875-G-T **
4016639-C-A 4148598-C-A **
4065297-C-A 4197256-C-A **
4078802-C-A 4210761-C-A **
4081002-C-A 4212961-C-A **
4100863-C-A 4232822-C-A FT275915 **
4129673-C-A 4261632-C-A **
4195860-T-A 4327819-T-A **
4208991-A-G 4340950-A-G **
4240344-C-A 4372303-C-A **
4271808-C-A 4403767-C-A **
4466832-C-A 4598791-C-A **
4505302-C-A 4637261-C-A **
4557391-C-T 4689350-C-T **
4626309-T-A 4758268-T-A **
4626334-T-A 4758293-T-A **
4626764-T-A 4758723-T-A **
4687488-C-A 4819447-C-A FTB85331 **
4696941-G-A 4828900-G-A **
4805426-C-A 4937385-C-A **
4901583-C-A 5033542-C-A **
4902502-A-G 5034461-A-G **
4908192-AG-A 5040151-AG-A **
4969039-C-A 5100998-C-A **
5107443-A-T 5239402-A-T **
5140463-A-G 5272422-A-G **
5190021-T-A 5321980-T-A FT17285 **
5242874-A-C 5374833-A-C **
5318368-T-A 5450327-T-A **
5586104-T-A 5718063-T-A **
5605984-A-G 5737943-A-G **
5673590-G-A 5805549-G-A **
5728329-C-A 5860288-C-A **
5755944-G-T 5887903-G-T **
5869582-C-A 6001541-C-A **
5869962-T-A 6001921-T-A **
5935376-C-A 6067335-C-A **
5936339-A-C 6068298-A-C **
6310814-G-A 6442773-G-A IR3_Dst **
6375599-T-G 6507558-T-G **
6402826-C-A 6534785-C-A **
6465472-C-T 6597431-C-T **
6647023-AT-A 6778982-AT-A **
6748040-C-A 6879999-C-A **
6756879-A-C 6888838-A-C **
6756881-T-C 6888840-T-C **
6756897-A-G 6888856-A-G **
6795262-C-A 6927221-C-A **
6807011-G-T 6938970-G-T **
6874570-C-A 7006529-C-A **
6925630-G-T 7057589-G-T **
6978238-T-C 7110197-T-C **
6981256-C-A 7113215-C-A **
7021779-A-G 7153738-A-G **
7040438-G-T 7172397-G-T **
7043505-G-T 7175464-G-T **
7095188-T-A 7227147-T-A **
7097970-C-A 7229929-C-A **
7098807-G-A 7230766-G-A **
7101061-C-G 7233020-C-G **
7106295-A-G 7238254-A-G **
7131406-CT-C 7263365-CT-C **
7135448-C-A 7267407-C-A **
7142771-C-A 7274730-C-A **
7160414-C-A 7292373-C-A **
7160920-T-A 7292879-T-A **
7166571-C-G 7298530-C-G **
7167629-C-A 7299588-C-A **
7169965-C-A 7301924-C-A **
7186169-C-A 7318128-C-A **
7195299-G-T 7327258-G-T **
7195307-C-G 7327266-C-G 16×A**
7207379-AT-A 7339338-AT-A **
7211319-C-A 7343278-C-A **
7240897-C-A 7372856-C-A **
7286849-A-G 7418808-A-G **
7297141-G-T 7429100-G-T **
7302348-C-A 7434307-C-A **
7317034-T-C 7448993-T-C **
7333007-G-A 7464966-G-A FT96128 **
7340416-C-G 7472375-C-G **
7349182-C-A 7481141-C-A **
7362316-T-G 7494275-T-G **
7414269-C-A 7546228-C-A **
7423911-T-C 7555870-T-C **
7432367-C-A 7564326-C-A **
7436304-A-G 7568263-A-G **
7578918-C-A 7710877-C-A **
7635991-G-A 7767950-G-A **
7645181-T-G 7777140-T-G **
7664305-C-A 7796264-C-A **
7670960-G-A 7802919-G-A **
7704564-C-A 7836523-C-A **
7832141-C-CTTTA 7964100-C-CTTTA **
7869198-C-A 8001157-C-A **
7990973-C-A 8122932-C-A FT67222 **
8073461-C-A 8205420-C-A **
8073981-T-A 8205940-T-A **
8075737-G-C 8207696-G-C **
8075819-A-C 8207778-A-C **
8172709-T-A 8304668-T-A **
8172710-G-A 8304669-G-A **
8172711-AG-A 8304670-AG-A **
8253566-C-A 8385525-C-A **
8279893-C-A 8411852-C-A **
8325663-T-G 8457622-T-G **
8345901-A-G 8477860-A-G **
8345911-A-G 8477870-A-G **
8698750-C-A 8830709-C-A **
8735074-C-A 8867033-C-A Y87857 **
8736213-A-C 8868172-A-C **
8736294-T-A 8868253-T-A **
8761652-T-G 8893611-T-G **
8811220-C-A 8943179-C-A **
9056639-C-A **
9056948-C-A **
8976821-A-C 9139212-A-C **
8987665-C-A 9150056-C-A **
9075409-T-C 9237800-T-C **
9143245-T-C 9305636-T-C **
9173561-T-C 9335952-T-C **
9397966-C-A 9560357-C-A **
9442186-C-A 9604577-C-A **
9442343-G-C 9604734-G-C **
9672312-T-A 9834703-T-A IR3_Prx **
9807875-C-A 9970266-C-A **
9810922-G-T 9973313-G-T **
9820415-A-T 9982806-A-T **
9820498-G-A 9982889-G-A **
9820506-C-CCT 9982897-C-CCT **
9820513-A-C 9982904-A-C **
9820530-T-C 9982921-T-C **
9822620-A-G 9985011-A-G **
9891717-C-A 10054108-C-A **
9942283-T-A 10104674-T-A **
9942931-C-A 10105322-C-A **
9963326-C-A 10125717-C-A **
9997907-C-A 10160298-C-A **
10023845-C-A 10186236-C-A **
10037794-C-A 10200185-C-A **
10050283-C-A 10212674-C-A **
10050729-C-A 10213120-C-A **
10651862-C-T **
10652948-T-C **
10654637-A-T **
10659062-T-A **
10659938-C-A **
10667013-C-CTATT **
10667014-C-CGGGTTA **
10672573-C-A **
10672606-T-C **
10673887-C-T BY83668 **
10673899-A-ATTCTGTTCCT **
10673912-C-CTATTT **
10673919-A-ATTACT **
10693822-T-A **
10753260-C-A **
10754921-C-A **
10763016-C-CTTTCA **
10763081-C-A **
10763098-T-G **
10763099-T-TA **
10763101-C-CCTAA **
10763150-C-G **
10770470-T-G **
10770526-T-A **
10781123-A-T **
10794690-C-A **
10796655-T-A **
10801806-C-A **
10811123-T-C **
10813051-C-T **
10818651-C-A **
10819636-C-A **
10819705-C-A **
10833155-C-A **
10860208-C-A **
10863367-A-C **
10868899-A-G **
10868902-C-G **
10875234-C-A **
10887959-T-A **
10916373-A-G **
10919169-A-T **
10921419-T-C **
10924519-C-A **
10924590-C-A **
10929482-C-A **
10935444-T-C **
10935448-A-C **
10935497-C-A **
10958537-A-T **
10962973-C-A **
10964832-C-A **
10964856-C-A **
10968135-C-A **
10973659-T-A **
10977113-C-A **
10986734-T-C **
10987753-A-ACACTC **
10989491-CTCCG-C **
10989668-G-C **
10992973-C-T **
10995670-C-A **
11000294-G-T **
11013966-T-C **
11013980-C-A **
11016087-C-A **
11028139-C-A **
13195877-T-A 11040201-T-A **
13215341-C-A 11059665-C-A **
13216507-C-A 11060831-C-A **
13248838-C-A 11093162-C-A **
13302151-C-T 11146475-C-T **
13316084-C-A 11160408-C-A **
13329188-G-A 11173512-G-A **
13409260-T-C 11253584-T-C **
13441596-G-A 11285920-G-A **
13441601-G-A 11285925-G-A **
13441608-T-A 11285932-T-A **
13441617-A-C 11285941-A-C **
13441631-AG-A 11285955-AG-A **
13461098-T-G 11305422-T-G **
13462260-C-A 11306584-C-A **
13474849-C-A 11319173-C-A **
13505480-C-T 11349804-C-T **
13520785-C-A 11365109-C-A **
13620826-C-A 11465150-C-A **
13642486-C-A 11486810-C-A **
13642488-A-T 11486812-A-T **
11644891-A-T **
11653415-T-C **
11659906-C-A **
13809525-A-T 11688819-A-T **
13855769-C-A 11735063-C-A **
13870475-C-A 11749769-C-A **
13874078-G-T 11753372-G-T **
13890846-G-T 11770140-G-T FT150940 **
13895206-C-A 11774500-C-A **
13895957-C-A 11775251-C-A **
13898814-A-T 11778108-A-T **
13902241-C-A 11781535-C-A **
13902294-C-G 11781588-C-G **
13938654-C-G 11817948-C-G **
13960599-G-T 11839893-G-T **
13960745-G-C 11840039-G-C **
13961568-A-G 11840862-A-G **
13975849-C-A 11855143-C-A **
14022105-C-A 11901399-C-A **
14025649-G-A 11904943-G-A **
14059490-C-A 11938784-C-A **
14073916-C-A 11953210-C-A **
14086087-C-A 11965381-C-A **
14089859-C-A 11969153-C-A **
14176372-G-A 12055666-G-A Y49094 **
14183341-A-T 12062635-A-T **
14195232-G-A 12074526-G-A **
14195232-G-GA 12074526-G-GA **
14245186-G-A 12124480-G-A **
14263358-A-G 12142652-A-G **
14283437-C-A 12162731-C-A **
14293804-C-A 12173098-C-A **
14295597-A-G 12174891-A-G **
14302027-G-T 12181321-G-T **
14395683-A-T 12274979-A-T **
14397374-C-A 12276670-C-A **
14397501-C-A 12276797-C-A **
14428811-C-T 12308086-C-T **
14431312-C-A 12310585-C-A **
14432327-T-C 12311600-T-C **
14471798-A-G 12351067-A-G **
12379259-C-A **
14495756-C-A 12383953-C-A **
14501900-C-A 12390105-C-A **
14508738-T-C 12396943-T-C **
14508748-A-G 12396953-A-G **
14511404-C-A 12399609-C-A **
14526876-T-C 12415077-T-C **
14549558-A-C 12437759-A-C **
14561908-C-T 12450109-C-T **
14562817-G-A 12451017-G-A **
14564038-T-C 12452238-T-C **
14593713-C-A 12481913-C-A **
14635577-T-C 12523646-T-C **
14649530-C-A 12537595-C-A **
14704360-T-A 12592426-T-A **
14712586-A-C 12600653-A-C **
14753173-C-A 12641242-C-A **
14779595-C-A 12667665-C-A **
14795106-A-G 12683177-A-G **
14858658-C-A 12746724-C-A **
14908328-T-A 12796395-T-A **
15034942-C-A 12923030-C-A **
15168786-C-A 13056872-C-A **
15177540-C-A 13065626-C-A **
15309709-T-A 13197813-T-A **
15309719-G-A 13197823-G-A **
15309727-G-A 13197831-G-A **
15315393-C-A 13203498-C-A **
15320759-T-A 13208877-T-A **
15324099-C-A 13212217-C-A **
15334531-C-A 13222649-C-A **
15358642-C-T 13246761-C-T **
15358650-C-T 13246769-C-T **
15358666-G-C 13246785-G-C **
15364056-T-G 13252176-T-G **
15388001-C-A 13276121-C-A **
15401870-T-A 13289990-T-A 9×A**
15430556-C-A 13318676-C-A **
15433090-C-A 13321210-C-A **
15433501-C-A 13321621-C-A **
15468614-C-A 13356734-C-A **
15593190-C-A 13481310-C-A **
15622595-CT-C 13510715-CT-C **
15653743-C-A 13541863-C-A **
15712073-A-C 13600193-A-C **
15739924-A-G 13628044-A-G **
15740753-C-A 13628873-C-A **
15776813-C-A 13664933-C-A **
15786518-A-T 13674638-A-T **
15844632-G-A 13732752-G-A **
15866312-G-A 13754432-G-A **
15898983-A-G 13787103-A-G **
15904136-C-A 13792256-C-A **
15904148-TCA-T 13792268-TCA-T **
15909244-T-G 13797364-T-G **
15928480-G-T 13816600-G-T **
15997384-A-G 13885504-A-G **
16000248-C-A 13888368-C-A **
16037318-C-A 13925438-C-A **
16054283-C-A 13942403-C-A **
16056996-C-A 13945116-C-A **
16060685-C-A 13948805-C-A **
16089715-C-A 13977835-C-A **
16092716-T-G 13980836-T-G **
16115825-T-C 14003945-T-C P8_Prx **
16177297-C-T 14065417-C-T **
16220669-C-A 14108789-C-A **
16242984-T-C 14131104-T-C **
16272297-T-C 14160417-T-C **
16294943-G-T 14183063-G-T **
16324114-G-T 14212234-G-T **
16340988-C-T 14229108-C-T **
16345100-T-C 14233220-T-C **
16427616-G-T 14315736-G-T **
16429665-G-T 14317785-G-T **
16464878-C-A 14352998-C-A **
16485770-C-A 14373890-C-A Y96485 ALK189 **
16505169-C-A 14393289-C-A **
16526727-T-C 14414847-T-C **
16528308-C-A 14416428-C-A **
16588294-C-G 14476414-C-G **
16602658-C-A 14490778-C-A **
16607583-C-A 14495703-C-A **
16622081-T-A 14510201-T-A **
16624703-T-G 14512823-T-G **
16640155-C-A 14528275-C-A **
16667937-G-T 14556057-G-T **
16702329-A-G 14590449-A-G **
16738219-C-A 14626339-C-A **
16786076-G-T 14674196-G-T **
16855332-A-C 14743452-A-C **
17004528-G-T 14892648-G-T **
17085691-T-G 14973811-T-G **
17092594-C-A 14980714-C-A **
17158606-C-A 15046726-C-A **
17199497-AT-A 15087617-AT-A 8×T**
17246992-T-G 15135112-T-G **
17270547-C-A 15158667-C-A **
17313497-A-G 15201617-A-G **
17370995-T-C 15259115-T-C **
17381367-G-C 15269487-G-C **
17490210-C-A 15378330-C-A **
17502860-C-A 15390980-C-A **
17504835-C-T 15392955-C-T **
17512599-C-A 15400719-C-A **
17575534-T-A 15463654-T-A **
17597912-A-G 15486032-A-G **
17638223-T-C 15526343-T-C **
17770220-C-CACGATTCATGCCATT 15658340-C-CACGATTCATGCCATT **
17770228-G-A 15658348-G-A **
17770244-C-T 15658364-C-T **
17770250-T-C 15658370-T-C **
17770265-C-A 15658385-C-A **
17770274-C-T 15658394-C-T **
17770275-A-G 15658395-A-G **
17782704-T-G 15670824-T-G **
17834415-T-G 15722535-T-G **
17840046-C-A 15728166-C-A **
17859844-C-A 15747964-C-A **
17865424-G-A 15753544-G-A **
17898112-A-G 15786232-A-G **
17923655-A-G 15811775-A-G **
17923675-A-G 15811795-A-G **
17926453-C-A 15814573-C-A **
18127659-C-A 16015779-C-A **
18174597-C-A 16062717-C-A **
18185153-G-T 16073273-G-T **
18191329-C-A 16079449-C-A **
18206683-C-A 16094803-C-A **
18211094-C-A 16099214-C-A **
18256212-C-T 16144332-C-T **
18343633-G-A 16231753-G-A P6_Prx **
18344530-T-TGA 16232650-T-TGA P6_Prx **
18395844-C-A 16283964-C-A P6_Gap **
18524347-T-C 16412467-T-C P6_Dst **
18605212-T-G 16493332-T-G **
18659736-C-A 16547856-C-A **
18742327-C-T 16630447-C-T **
18742340-G-T 16630460-G-T **
18767729-C-A 16655849-C-A **
18867333-C-T 16755453-C-T **
18867338-TC-T 16755458-TC-T **
18869064-C-A 16757184-C-A **
18989677-C-G 16877797-C-G **
19052443-G-A 16940563-G-A **
19078507-C-A 16966627-C-A **
19079063-G-T 16967183-G-T **
19079289-T-C 16967409-T-C **
19121847-T-C 17009967-T-C **
19122120-C-A 17010240-C-A **
19126462-T-AAAAAAAAAA 17014582-T-AAAAAAAAAA **
19126480-T-C 17014600-T-C **
19223229-C-A 17111349-C-A **
19248023-C-A 17136143-C-A **
19296909-G-A 17185029-G-A **
19300676-C-A 17188796-C-A **
19312253-C-A 17200373-C-A **
19385091-A-G 17273211-A-G **
19449148-G-A 17337268-G-A **
19449166-A-G 17337286-A-G **
19479458-C-A 17367578-C-A **
19663384-C-G 17551504-C-G P5_Prx **
19732411-T-TCGAA 17620531-T-TCGAA P5_Prx **
19844933-C-A 17733053-C-A P5_Prx **
20101729-C-CATAT 17989849-C-CATAT P5_Dst **
20312788-T-TC 18150902-T-TC P5_Dst **
20332149-T-C 18170263-T-C P5_Dst **
20434713-C-A 18272827-C-A P5_Dst **
20614900-A-G 18453014-A-G P4_Prx **
20637660-GTC-T 18475774-GTC-T P4_Prx **
20637682-G-C 18475796-G-C P4_Prx **
20830333-C-A 18668447-C-A P4_Gap **
20840953-C-A 18679067-C-A P4_Gap **
20865358-A-ACC 18703472-A-ACC P4_Dst **
20865408-C-T 18703522-C-T P4_Dst **
20865415-G-A 18703529-G-A P4_Dst **
21054454-C-A 18892568-C-A **
21182391-G-A 19020505-G-A **
21196456-C-A 19034570-C-A **
21211511-A-C 19049625-A-C **
21427821-TA-T 19265935-TA-T **
21447815-T-C 19285929-T-C **
21457505-G-T 19295619-G-T **
21467938-C-G 19306052-C-G **
21531518-C-A 19369632-C-A **
21665735-A-C 19503849-A-C **
21836266-G-T 19674380-G-T **
21863855-G-A 19701969-G-A **
21875808-G-C 19713922-G-C **
21919368-G-T 19757482-G-T **
21987350-A-G 19825464-A-G **
22048489-C-A 19886603-C-A **
22078108-C-A 19916222-C-A **
22089932-T-A 19928046-T-A **
22167270-T-C 20005384-T-C **
22167272-G-C 20005386-G-C **
22167274-T-C 20005388-T-C **
22170219-T-G 20008333-T-G **
22201749-A-T 20039863-A-T **
22205610-G-T 20043724-G-T **
22205617-C-A 20043731-C-A **
22210529-A-G 20048643-A-G **
22241464-A-G 20079578-A-G DYZ19 **
22241481-T-G 20079595-T-G DYZ19 **
22352476-T-A 20190590-T-A DYZ19 **
22352498-T-G 20190612-T-G DYZ19 **
22447684-G-A 20285798-G-A DYZ19 **
22447691-C-T 20285805-C-T DYZ19 **
22520787-TCAAA-T 20358901-TCAAA-T **
22659520-C-A 20497634-C-A **
22659717-G-T 20497831-G-T **
22732859-C-A 20570973-C-A **
22797998-G-A 20636112-G-A **
22849517-A-C 20687631-A-C **
22884895-C-A 20723009-C-A FTB49587 **
22914638-C-A 20752752-C-A **
22954670-T-A 20792784-T-A **
23087598-C-A 20925712-C-A **
23119949-C-A 20958063-C-A **
23142297-G-T 20980411-G-T **
23144340-C-A 20982454-C-A **
23199722-A-G 21037836-A-G **
23199871-A-T 21037985-A-T **
23255920-C-T 21094034-C-T **
23345625-T-C 21183739-T-C **
23357272-C-A 21195386-C-A **
23361043-C-A 21199157-C-A **
23401390-C-A 21239504-C-A **
24205368-C-A 22059221-C-A P3_b1 **
24220971-G-T 22074824-G-T P3_b1 **
24300815-T-TTG 22154668-T-TTG P3_t1 **
24363741-C-A 22217594-C-A **
24384945-T-A 22238798-T-A **
24422553-C-A 22276406-C-A **
24513675-C-A 22367528-C-A **
24600636-C-A 22454489-C-A P3_t2 **
25709419-A-G 23563272-A-G P1_b3 **
25709420-G-GT 23563273-G-GT P1_b3 **
25709432-C-G 23563285-C-G P1_b3 **
25709437-T-C 23563290-T-C P1_b3 **
26139480-T-TA 23993333-T-TA P1_Y1 **
26286025-G-T 24139878-G-T P1_Y1 **
26394678-T-G 24248531-T-G P1_Y1 **
26415663-C-A 24269516-C-A P1_Y1 **
27546775-G-C 25400628-G-C P1_Y2 **
27546782-C-A 25400635-C-A P1_Y2 **
27576075-A-C 25429928-A-C P1_Y2 **
27603561-T-G 25457414-T-G P1_Y2 **
27862605-A-G 25716458-A-G P1_Y2 **
27873089-C-A 25726942-C-A P1_Y2 **
27952051-T-A 25805904-T-A P1_Y2 **
28229025-T-A 26082878-T-A P1_b4 **
28462270-G-T 26316123-G-T **
28496859-C-A 26350712-C-A **
28506113-A-C 26359966-A-C **
28521663-C-T 26375516-C-T **
28542416-CAAAAA-C 26396269-CAAAAA-C 17×A**
28545145-T-G 26398998-T-G **
28545801-A-G 26399654-A-G **
28614873-C-A 26468726-C-A **
28617561-A-C 26471414-A-C **
28622090-G-T 26475943-G-T **
28633624-C-A 26487477-C-A **
28643824-C-A 26497677-C-A **
28698843-C-A 26552696-C-A **
28701898-A-T 26555751-A-T **
28704708-T-C 26558561-T-C **
28720211-C-A 26574064-C-A **
28734304-C-A 26588157-C-A **
28742363-C-A 26596216-C-A **
28800728-A-T 26654581-A-T **
56828259-C-A **
56847140-C-G **
56847169-G-C **
56847215-T-A **
56849648-A-G **
24228-A-T **
16537-G-T **
16548-T-C **
28796992-A-G 26650845-A-G **
28797007-G-A 26650860-G-A **
16550-G-C **
26344423-CTT-C 24198276-CTT-C P1_Y1 28×T**
3433899-G-A 3565858-G-A **
6260321-A-ACC 6392280-A-ACC IR3_Dst **
13932187-T-C 11811481-T-C **
18055538-T-A 15943658-T-A **
19385491-T-A 17273611-T-A **
19788314-A-G 17676434-A-G P5_Prx **
20687749-A-T 18525863-A-T P4_Prx **
24300063-G-T 22153916-G-T P3_t1 **
25925997-A-T 23779850-A-T P1_Y1 **
27924444-T-TC 25778297-T-TC P1_Y2 **
9967561-TGTTGA-T 10129952-TGTTGA-T ***
13453416-T-G 11297740-T-G ***
28792402-C-T 26646255-C-T ***
13832601-C-T 11711895-C-T FT104823 ***
22427321-A-G 20265435-A-G DYZ19 ***
13862173-A-G 11741467-A-G FT22399 ***
13858598-C-T 11737892-C-T ***
25240239-CTT-C 23094092-CTT-C P2_r1 22×T***
13453415-A-G 11297739-A-G ***
13867485-T-C 11746779-T-C ***
13868229-T-C 11747523-T-C ***
16715034-GGT-G 14603154-GGT-G 10×GT***
10020396-G-T 10182787-G-T ***
13842227-A-C 11721521-A-C ***
13867483-C-T 11746777-C-T ***
13813551-T-C 11692845-T-C FTA52567 ***
13869408-T-A 11748702-T-A ***
13869414-G-A 11748708-G-A ***
13869426-A-ATCGTT 11748720-A-ATCGTT ***
58819638-C-T 56771233-G-A ***
58974063-A-G 56827916-A-G ***
3641089-C-T 3773048-C-T ***
6126444-G-C 6258403-G-C ZS5053 ***
9174799-CATAG-C 9337190-CATAG-C ***
13447093-ATTCTATTACT-A 11291417-ATTCTATTACT-A ***
13451141-T-C 11295465-T-C ***
13451161-T-A 11295485-T-A ***
13465054-C-A 11309378-C-A ***
13483942-T-A 11328266-T-A ***
13600365-AAG-A 11444689-AAG-A ***
13714031-G-A 11558355-G-A ***
13714034-G-A 11558358-G-A ***
13723300-A-C 11567624-A-C ***
13723301-T-C 11567625-T-C ***
13723302-AAATGG-C 11567626-AAATGG-C 4×AATGG***
13808679-G-A 11687973-G-A ***
13838977-CAACAA-C 11718271-CAACAA-C ***
13842228-G-A 11721522-G-A ***
13853065-G-C 11732359-G-C ***
13862166-GAACTT-G 11741460-GAACTT-G ***
13866952-C-A 11746246-C-A ***
13869401-T-A 11748695-T-A ***
17872657-G-T 15760777-G-T ***
22237713-C-T 20075827-C-T DYZ19 ***
22237714-T-A 20075828-T-A DYZ19 ***
22427337-C-A 20265451-C-A DYZ19 ***
23747205-C-T 21585319-C-T 29×T***
23761608-A-AAAG,G 21599722-A-AAAG,G 23×AAG***
24244597-TGTC-T 22098450-TGTC-T P3_b1 ***
24830469-C-A 22684322-C-A P3_b2 ***
25166749-A-G 23020602-A-G g1 ***
25323006-G-T 23176859-G-T P2_r1 ***
25524693-C-CTTTT 23378546-C-CTTTT P1_gr1 33×T***
25819473-TA-T 23673326-TA-T P1_b3 11×A***
26392991-T-TCTCACACA 24246844-T-TCTCACACA P1_Y1 15×CA***
58974003-T-A 56827856-T-A ***
2763795-C-A 2895754-C-A 8×A***
13582582-T-C 11426906-T-C ***
16962683-TTTCC-T 14850803-TTTCC-T 5×TTCC***
22255188-C-A 20093302-C-A DYZ19 ***
17662010-ATGTGTGTG-A 15550130-ATGTGTGTG-A 21×TG***
13451187-CCTTT-C,CCACT 11295511-CCTTT-C,CCACT ***
13464965-CT-C,CC 11309289-CT-C,CC ***
15309739-C-A,CAA 13197843-C-A,CA 41×A***
22315953-G-GT 20154067-G-GT DYZ19 ***
2881529-G-A 3013488-G-A ***
3640897-T-C 3772856-T-C ***
4902616-A-C 5034575-A-C ***
6650698-C-A 6782657-C-A ***
6827184-G-T 6959143-G-T ***
6918595-C-A 7050554-C-A ***
6922735-C-A 7054694-C-A ***
7724606-T-C 7856565-T-C ***
7776369-G-T 7908328-G-T ***
7866227-A-T 7998186-A-T ***
8049825-G-A 8181784-G-A BY193483 ***
8052890-C-A 8184849-C-A ***
8668118-C-A 8800077-C-A ***
8719039-C-A 8850998-C-A ***
9422913-C-A 9585304-C-A ***
10034269-G-A 10196660-G-A ***
10797970-CGTTCC-A,AACTCC ***
10911769-C-A ***
10958538-T-A ***
10958567-A-G ***
10965585-A-G ***
10989498-C-A ***
10989499-C-A ***
10989501-T-A ***
10989516-C-A ***
13296115-C-A 11140439-C-A ***
13456499-T-C 11300823-T-C ***
13468263-AG-A 11312587-AG-A ***
11643757-T-C ***
13856776-C-A 11736070-C-A ***
13857911-GA-G 11737205-GA-G ***
13944748-C-A 11824042-C-A ***
14572972-C-A 12461172-C-A ***
15305810-C-A 13193909-C-A ***
15605218-AT-A,ATT 13493338-AT-A,ATT 13×T***
15882483-A-G 13770603-A-G ***
15963965-CT-C 13852085-CT-C 9×T***
16420686-C-A 14308806-C-A ***
16949975-C-A 14838095-C-A ***
17895210-A-T 15783330-A-T ***
18108804-C-A 15996924-C-A ***
18709843-T-C 16597963-T-C ***
19103856-A-T 16991976-A-T ***
19136729-C-A 17024849-C-A ***
19492888-C-A 17381008-C-A ***
22102540-C-A 19940654-C-A ***
22200784-C-G,G 20038898-C-G,G ***
22200888-C-A 20039002-C-A ***
22201031-C-A 20039145-C-A ***
22210650-C-G 20048764-C-G ***
22210671-A-G 20048785-A-G ***
23196347-T-C 21034461-T-C ***
23455294-C-T 21293408-C-T ***
23834228-A-ATT 21672342-A-ATT 14×T***
27883510-C-A 25737363-C-A P1_Y2 ***
28510789-T-C 26364642-T-C ***
28617866-T-A 26471719-T-A ***
28648909-AT-A 26502762-AT-A 8×T***
56829781-C-A,G ***
56830213-C-T ***
19231319-CTTTTT-C 17119439-CTTTTT-C 24×T***
10914546-G-C ***
6776497-CAAAAAA-C 6908456-CAAAAAA-C 28×A***
2900757-G-A 3032716-G-A FT377157 ***
7383851-CAA-C,CA 7515810-CAA-C,CA 24×A***
9508531-CTTTT-C,CTTT 9670922-CTTTT-C,CTTT 25×T***
16574806-A-G 14462926-A-G ***
22245558-T-C 20083672-T-C DYZ19 ***
22255193-A-G 20093307-A-G DYZ19 ***
22447049-C-A 20285163-C-A DYZ19 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit POSITION-REF-ALT (hg19) POSITION-REF-ALT (hg38) Note
1636546704979-C-T6836938-C-TThere are 12 valid reads and 11 have T, the other has a C.
Manual14242365-CATATG-C12121659-CATATG-CAbout 46 positive reads.
Manual9369647-T-C9532038-T-C39C 236T and about 10 rows not aligned properly.
Manual8997231-G-A9159622-G-A8 reads total. 7 are A, 1 is G.
Manual18060345-C-T15948465-C-T4 reads, all T.
Manual24173105-G-A22026958-G-A81A 6C 300G 1T
Manual23272845-G-GA21110959-G-GA2 reads, both show the insertion.
Manual26594618-A-ATGTG24448471-A-ATGTGThis is an STR. About 11 regions cover this region. 7 reads show an increase of 2*(TG), 2 reads show an increase of 3*(TG) and two reads match the reference sequence.
Manual18382652-T-A16270772-T-A4 reads, all A.