Fox
BigY2: 37645, BigY3: 37645MDKA Birth: England
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 37645 |
---|---|---|---|---|---|---|---|---|
28817644-G-T | 26671497-G-T | A* | ||||||
19190068-C-G | 17078188-C-G | BY127085 | Y | Y | + | |||
18892179-G-T | 16780299-G-T | ** | ||||||
8431228-CTTTTT-C | 8563187-CTTTTT-C | 17×T | ** | |||||
17054894-C-T | 14943014-C-T | ** | ||||||
22318441-A-T | 20156555-A-T | BY21015 | DYZ19 | ** | ||||
22619557-A-C | 20457671-A-C | Z22765 | ** | |||||
23435178-TG-T | 21273292-TG-T | ** | ||||||
23829495-G-T | 21667609-G-T | ** | ||||||
28642804-TCA-T | 26496657-TCA-T | ** | ||||||
59001936-G-T | 56855789-G-T | ** | ||||||
13456837-TATTCC-T | 11301161-TATTCC-T | 7×ATTCC | ** | |||||
13140559-A-T | 10630045-A-T | ** | ||||||
4136578-C-A | 4268537-C-A | ** | ||||||
11006443-A-C | ** | |||||||
10802394-T-A | ** | |||||||
8002336-C-A | 8134295-C-A | ** | ||||||
15701073-C-A | 13589193-C-A | ** | ||||||
10996938-G-T | ** | |||||||
23899354-G-T | 21737468-G-T | ** | ||||||
10884142-C-A | ** | |||||||
10800287-G-T | ** | |||||||
10961570-T-A | ** | |||||||
10792755-T-G | ** | |||||||
7188185-C-A | 7320144-C-A | ** | ||||||
10685761-C-T | ** | |||||||
10685777-C-T | ** | |||||||
10800327-T-C | ** | |||||||
14593566-C-A | 12481766-C-A | ** | ||||||
10845577-G-T | ** | |||||||
56843547-C-A | ** | |||||||
14062010-CAAAAAA-C | 11941304-CAAAAAA-C | 34×A | ** | |||||
10753234-C-T | ** | |||||||
10817378-C-A | ** | |||||||
28773685-C-A | 26627538-C-A | ** | ||||||
10877848-C-A | ** | |||||||
10926662-G-A | ** | |||||||
10937472-T-G | ** | |||||||
14755689-C-A | 12643758-C-A | ** | ||||||
7098771-C-A | 7230730-C-A | ** | ||||||
7179900-C-A | 7311859-C-A | ** | ||||||
9034548-G-A | 9196939-G-A | ** | ||||||
16528364-C-A | 14416484-C-A | ** | ||||||
22189262-T-A | 20027376-T-A | ** | ||||||
13962086-C-A | 11841380-C-A | ** | ||||||
10972324-C-A | ** | |||||||
15409592-C-A | 13297712-C-A | ** | ||||||
16045866-G-T | 13933986-G-T | ** | ||||||
11643603-C-A | DYZ17 | ** | ||||||
11006456-T-C | ** | |||||||
20959450-C-A | 18797564-C-A | P4_Dst | ** | |||||
11020249-A-ATTCCT | ** | |||||||
10961358-C-A | ** | |||||||
10911790-C-A | ** | |||||||
8046456-C-A | 8178415-C-A | ** | ||||||
10964833-A-T | ** | |||||||
10669483-C-T | ** | |||||||
10744463-C-T | ** | |||||||
10744468-C-G | ** | |||||||
10744499-C-A | ** | |||||||
10744517-T-G | ** | |||||||
10845595-C-T | ** | |||||||
11650990-C-A | DYZ17 | ** | ||||||
19958286-T-TG | 17846406-T-TG | P5_Prx | ** | |||||
16269356-C-A | 14157476-C-A | ** | ||||||
17334008-A-G | 15222128-A-G | ** | ||||||
10856536-C-A | ** | |||||||
18125533-C-A | 16013653-C-A | ** | ||||||
15137900-C-A | 13025987-C-A | ** | ||||||
21244878-C-A | 19082992-C-A | ** | ||||||
10964822-G-T | ** | |||||||
28816098-G-T | 26669951-G-T | ** | ||||||
28429945-C-A | 26283798-C-A | P1_gr2 | ** | |||||
18709788-C-A | 16597908-C-A | ** | ||||||
23142043-C-A | 20980157-C-A | ** | ||||||
10685804-T-TATCAC | ** | |||||||
13209506-C-A | 11053830-C-A | ** | ||||||
23368-G-A | ** | |||||||
16843207-C-A | 14731327-C-A | ** | ||||||
8214303-G-T | 8346262-G-T | ** | ||||||
18785371-G-A | 16673491-G-A | ** | ||||||
13940898-G-A | 11820192-G-A | ** | ||||||
18305636-G-T | 16193756-G-T | P6_Prx | ** | |||||
15909270-C-A | 13797390-C-A | ** | ||||||
10867727-G-T | ** | |||||||
13323279-A-AG | 11167603-A-AG | ** | ||||||
16073019-C-A | 13961139-C-A | ** | ||||||
6652574-C-A | 6784533-C-A | ** | ||||||
9441696-C-A | 9604087-C-A | ** | ||||||
23204366-C-A | 21042480-C-A | ** | ||||||
16581385-C-A | 14469505-C-A | ** | ||||||
4080932-C-A | 4212891-C-A | ** | ||||||
10772685-G-T | ** | |||||||
14443137-C-A | 12322410-C-A | BY161790 | ** | |||||
28808623-T-G | 26662476-T-G | ** | ||||||
10860550-C-A | ** | |||||||
21183622-C-A | 19021736-C-A | ** | ||||||
7704866-C-A | 7836825-C-A | ** | ||||||
10767846-C-CATTAT | ** | |||||||
10767850-C-G | ** | |||||||
10767852-A-G | ** | |||||||
10767870-C-A | ** | |||||||
10655938-C-A | ** | |||||||
16476291-C-T | 14364411-C-T | ** | ||||||
16033716-C-A | 13921836-C-A | ** | ||||||
10050237-C-A | 10212628-C-A | ** | ||||||
22128527-C-A | 19966641-C-A | 9×T | ** | |||||
10845552-C-T | ** | |||||||
10845580-T-A | ** | |||||||
10845614-A-G | ** | |||||||
10845626-C-A | ** | |||||||
23186328-C-A | 21024442-C-A | FT26474 | ** | |||||
6368136-C-A | 6500095-C-A | ** | ||||||
14338948-C-A | 12218243-C-A | ** | ||||||
15404162-C-A | 13292282-C-A | ** | ||||||
11006479-C-A | ** | |||||||
16445853-C-A | 14333973-C-A | ** | ||||||
10809267-C-A | ** | |||||||
17517262-C-A | 15405382-C-A | ** | ||||||
5537475-C-A | 5669434-C-A | ** | ||||||
10922467-G-A | ** | |||||||
2689672-G-T | 2821631-G-T | ** | ||||||
2728065-G-T | 2860024-G-T | ** | ||||||
2766698-G-A | 2898657-G-A | ** | ||||||
2803589-G-T | 2935548-G-T | ** | ||||||
2824461-T-G | 2956420-T-G | ** | ||||||
2860220-C-A | 2992179-C-A | ** | ||||||
2884087-C-G | 3016046-C-G | ** | ||||||
3271687-C-T | 3403646-C-T | ** | ||||||
3347431-C-G | 3479390-C-G | ** | ||||||
3405592-T-G | 3537551-T-G | ** | ||||||
3500614-C-A | 3632573-C-A | ** | ||||||
3782765-G-T | 3914724-G-T | ** | ||||||
4080959-G-A | 4212918-G-A | ** | ||||||
4201263-G-T | 4333222-G-T | ** | ||||||
4201274-G-A | 4333233-G-A | ** | ||||||
4201278-G-T | 4333237-G-T | ** | ||||||
4213043-C-A | 4345002-C-A | ** | ||||||
4351598-G-T | 4483557-G-T | ** | ||||||
4351616-T-G | 4483575-T-G | ** | ||||||
4396626-G-T | 4528585-G-T | ** | ||||||
4417302-G-T | 4549261-G-T | ** | ||||||
4465264-A-T | 4597223-A-T | ** | ||||||
4576411-C-A | 4708370-C-A | ** | ||||||
4610176-A-C | 4742135-A-C | ** | ||||||
4754013-C-A | 4885972-C-A | ** | ||||||
4770235-G-T | 4902194-G-T | ** | ||||||
4863296-G-T | 4995255-G-T | ** | ||||||
4867555-TCACACACA-T | 4999514-TCACACACA-T | 19×CA | ** | |||||
4961501-T-C | 5093460-T-C | ** | ||||||
5135124-C-A | 5267083-C-A | ** | ||||||
5335915-A-T | 5467874-A-T | ** | ||||||
5675356-C-T | 5807315-C-T | ** | ||||||
5707288-C-A | 5839247-C-A | ** | ||||||
5865132-A-T | 5997091-A-T | ** | ||||||
5910760-C-A | 6042719-C-A | ** | ||||||
6096792-C-A | 6228751-C-A | ** | ||||||
6131942-A-T | 6263901-A-T | ** | ||||||
6134329-G-T | 6266288-G-T | ** | ||||||
6210425-G-T | 6342384-G-T | IR3_Dst | ** | |||||
6210427-T-G | 6342386-T-G | IR3_Dst | ** | |||||
6389895-C-A | 6521854-C-A | ** | ||||||
6424859-C-A | 6556818-C-A | ** | ||||||
6534758-G-A | 6666717-G-A | ** | ||||||
6651640-A-T | 6783599-A-T | ** | ||||||
6653964-C-A | 6785923-C-A | ** | ||||||
6715197-G-T | 6847156-G-T | ** | ||||||
6741273-A-G | 6873232-A-G | ** | ||||||
6751588-A-G | 6883547-A-G | ** | ||||||
6751607-G-T | 6883566-G-T | ** | ||||||
6751625-T-G | 6883584-T-G | ** | ||||||
6838522-G-A | 6970481-G-A | FT223717 | ** | |||||
6861574-G-T | 6993533-G-T | ** | ||||||
6861579-C-G | 6993538-C-G | ** | ||||||
6922918-C-A | 7054877-C-A | ** | ||||||
6944772-C-A | 7076731-C-A | ** | ||||||
6944773-C-A | 7076732-C-A | ** | ||||||
6944783-T-C | 7076742-T-C | ** | ||||||
6971713-C-T | 7103672-C-T | ** | ||||||
7021859-C-T | 7153818-C-T | ** | ||||||
7039965-C-T | 7171924-C-T | ** | ||||||
7101590-T-G | 7233549-T-G | ** | ||||||
7132858-G-T | 7264817-G-T | ** | ||||||
7157963-G-T | 7289922-G-T | ** | ||||||
7158992-C-A | 7290951-C-A | ** | ||||||
7204898-AT-A | 7336857-AT-A | ** | ||||||
7243848-T-A | 7375807-T-A | ** | ||||||
7243854-G-T | 7375813-G-T | ** | ||||||
7336236-A-C | 7468195-A-C | ** | ||||||
7412984-C-A | 7544943-C-A | ** | ||||||
7470507-GT-G | 7602466-GT-G | IR1_L | ** | |||||
7476836-C-G | 7608795-C-G | IR1_L | ** | |||||
7631013-C-A | 7762972-C-A | ** | ||||||
7631162-C-A | 7763121-C-A | ** | ||||||
7701456-C-A | 7833415-C-A | ** | ||||||
7829625-G-C | 7961584-G-C | ** | ||||||
7869190-A-C | 8001149-A-C | ** | ||||||
7869193-A-C | 8001152-A-C | ** | ||||||
7869204-G-T | 8001163-G-T | ** | ||||||
8046347-C-A | 8178306-C-A | ** | ||||||
8216398-C-A | 8348357-C-A | ** | ||||||
8350818-C-A | 8482777-C-A | ** | ||||||
8690217-T-TC | 8822176-T-TC | ** | ||||||
8704281-C-A | 8836240-C-A | ** | ||||||
8720604-C-A | 8852563-C-A | ** | ||||||
8732789-G-T | 8864748-G-T | ** | ||||||
8741830-A-C | 8873789-A-C | ** | ||||||
8785599-A-C | 8917558-A-C | ** | ||||||
9119248-C-G | ** | |||||||
9119262-T-G | ** | |||||||
9034562-G-A | 9196953-G-A | ** | ||||||
9034566-A-G | 9196957-A-G | ** | ||||||
9046914-G-T | 9209305-G-T | ** | ||||||
9079254-G-C | 9241645-G-C | ** | ||||||
9081634-C-A | 9244025-C-A | ** | ||||||
9144295-G-T | 9306686-G-T | ** | ||||||
9223106-G-T | 9385497-G-T | ** | ||||||
9354011-C-A | 9516402-C-A | ** | ||||||
9475299-C-A | 9637690-C-A | ** | ||||||
9487686-G-T | 9650077-G-T | ** | ||||||
9512378-C-A | 9674769-C-A | ** | ||||||
9618355-A-T | 9780746-A-T | IR3_Prx | ** | |||||
9739008-T-G | 9901399-T-G | IR3_Prx | ** | |||||
9837149-C-A | 9999540-C-A | ** | ||||||
9852954-G-T | 10015345-G-T | ** | ||||||
9853006-T-G | 10015397-T-G | ** | ||||||
9853007-G-T | 10015398-G-T | ** | ||||||
9857280-G-T | 10019671-G-T | ** | ||||||
9936309-C-A | 10098700-C-A | ** | ||||||
9952378-C-A | 10114769-C-A | ** | ||||||
10660928-T-C | ** | |||||||
10669487-T-TCCACC | ** | |||||||
10669535-A-G | ** | |||||||
10687016-T-G | ** | |||||||
10693507-C-T | ** | |||||||
10763091-C-CAATAT | ** | |||||||
10764582-T-TCCGAA | ** | |||||||
10775940-C-T | ** | |||||||
10790466-C-T | ** | |||||||
10796269-C-A | ** | |||||||
10800299-C-T | ** | |||||||
10800322-T-C | ** | |||||||
10809244-A-C | ** | |||||||
10823676-C-A | ** | |||||||
10825457-T-A | ** | |||||||
10825630-T-G | ** | |||||||
10832953-C-A | ** | |||||||
10832975-T-G | ** | |||||||
10833019-A-T | ** | |||||||
10833027-C-A | ** | |||||||
10833500-C-A | ** | |||||||
10836101-C-A | ** | |||||||
10836554-C-G | ** | |||||||
10844295-T-A | ** | |||||||
10860393-A-G | ** | |||||||
10860447-A-C | ** | |||||||
10861285-G-A | ** | |||||||
10862977-C-A | ** | |||||||
10863021-C-A | ** | |||||||
10866144-C-A | ** | |||||||
10867749-T-G | ** | |||||||
10877907-A-T | ** | |||||||
10877924-A-G | ** | |||||||
10877945-A-T | ** | |||||||
10881575-C-A | ** | |||||||
10888454-C-A | ** | |||||||
10898975-CATTAA-C | ** | |||||||
10911289-T-A | ** | |||||||
10922459-C-T | ** | |||||||
10927920-A-C | ** | |||||||
10932247-T-G | ** | |||||||
10932339-C-A | ** | |||||||
10934726-CG-C | ** | |||||||
10937164-A-G | ** | |||||||
10937219-A-G | ** | |||||||
10944806-C-G | ** | |||||||
10946047-T-G | ** | |||||||
10956079-A-T | ** | |||||||
10961462-TC-A | ** | |||||||
10961544-T-TACCAC | ** | |||||||
10961611-C-A | ** | |||||||
10964021-C-A | ** | |||||||
10964034-C-A | ** | |||||||
10964546-C-T | FT164991 | ** | ||||||
10964597-C-T | ** | |||||||
10985894-C-A | ** | |||||||
10987243-T-C | ** | |||||||
10996972-G-T | ** | |||||||
10998758-A-C | ** | |||||||
10998908-A-G | ** | |||||||
10998923-A-G | ** | |||||||
11000201-C-A | ** | |||||||
11006448-A-G | FT393431 | ** | ||||||
11006454-C-T | ** | |||||||
11006461-C-T | ** | |||||||
11006493-CCATTT-C | ** | |||||||
11006504-C-A | ** | |||||||
11006513-C-G | ** | |||||||
11018828-A-T | ** | |||||||
13197064-C-A | 11041388-C-A | ** | ||||||
13227298-G-T | 11071622-G-T | ** | ||||||
13228014-A-G | 11072338-A-G | ** | ||||||
13506995-G-A | 11351319-G-A | ** | ||||||
13511364-G-C | 11355688-G-C | ** | ||||||
13557799-T-G | 11402123-T-G | ** | ||||||
11643614-G-T | DYZ17 | ** | ||||||
11650954-C-A | DYZ17 | ** | ||||||
11671261-G-A | DYZ17 | ** | ||||||
11672498-G-T | DYZ17 | ** | ||||||
11672502-G-T | DYZ17 | ** | ||||||
11672518-G-T | DYZ17 | ** | ||||||
11673415-T-A | DYZ17 | ** | ||||||
13804139-T-A | 11683433-T-A | DYZ17 | ** | |||||
13809885-A-C | 11689179-A-C | DYZ17 | ** | |||||
13811123-G-T | 11690417-G-T | DYZ17 | ** | |||||
13911216-G-T | 11790510-G-T | ** | ||||||
13940918-G-C | 11820212-G-C | ** | ||||||
14025063-C-G | 11904357-C-G | ** | ||||||
14025940-A-C | 11905234-A-C | ** | ||||||
14025967-G-T | 11905261-G-T | ** | ||||||
14050039-C-A | 11929333-C-A | ** | ||||||
14053668-A-G | 11932962-A-G | ** | ||||||
14101457-C-A | 11980751-C-A | ** | ||||||
14198344-C-A | 12077638-C-A | FT12982 | ** | |||||
14330839-C-A | 12210133-C-A | ** | ||||||
14372201-G-T | 12251497-G-T | ** | ||||||
14372880-CC-A | 12252176-CC-A | ** | ||||||
14384449-C-T | 12263745-C-T | ** | ||||||
14384458-A-T | 12263754-A-T | ** | ||||||
14395551-C-A | 12274847-C-A | ** | ||||||
14451787-C-T | 12331060-C-T | ** | ||||||
14454303-C-T | 12333576-C-T | ** | ||||||
14688379-A-G | 12576445-A-G | ** | ||||||
14702518-C-G | 12590584-C-G | ** | ||||||
14723788-C-A | 12611856-C-A | ** | ||||||
14837045-G-T | 12725112-G-T | ** | ||||||
14879923-C-A | 12767993-C-A | ** | ||||||
14916763-C-A | 12804830-C-A | ** | ||||||
14965211-T-C | 12853286-T-C | ** | ||||||
15051364-C-G | 12939455-C-G | ** | ||||||
15057244-C-T | 12945336-C-T | ** | ||||||
15070562-C-T | 12958653-C-T | ** | ||||||
15130718-G-T | 13018805-G-T | ** | ||||||
15157884-C-A | 13045970-C-A | ** | ||||||
15208168-G-T | 13096254-G-T | ** | ||||||
15237237-C-A | 13125323-C-A | ** | ||||||
15249092-G-C | 13137178-G-C | ** | ||||||
15324917-G-A | 13213035-G-A | ** | ||||||
15332852-C-A | 13220970-C-A | ** | ||||||
15380267-G-T | 13268387-G-T | ** | ||||||
15476324-G-T | 13364444-G-T | ** | ||||||
15476341-T-G | 13364461-T-G | ** | ||||||
15558155-G-T | 13446275-G-T | ** | ||||||
15581124-C-A | 13469244-C-A | ** | ||||||
15588770-C-A | 13476890-C-A | ** | ||||||
15594995-C-T | 13483115-C-T | ** | ||||||
15766944-A-C | 13655064-A-C | ** | ||||||
15781957-G-A | 13670077-G-A | FT296625 | ** | |||||
15789131-G-T | 13677251-G-T | ** | ||||||
15858320-C-T | 13746440-C-T | ** | ||||||
15860036-C-A | 13748156-C-A | ** | ||||||
15903938-T-A | 13792058-T-A | ** | ||||||
15903940-A-C | 13792060-A-C | ** | ||||||
15903954-A-G | 13792074-A-G | ** | ||||||
15904016-C-A | 13792136-C-A | ** | ||||||
15913913-G-T | 13802033-G-T | ** | ||||||
15913928-G-C | 13802048-G-C | ** | ||||||
15913935-G-T | 13802055-G-T | ** | ||||||
15952005-G-C | 13840125-G-C | ** | ||||||
16032404-T-C | 13920524-T-C | ** | ||||||
16270688-G-T | 14158808-G-T | ** | ||||||
16291973-G-T | 14180093-G-T | ** | ||||||
16340476-C-A | 14228596-C-A | ** | ||||||
16423856-C-A | 14311976-C-A | ** | ||||||
16464854-C-A | 14352974-C-A | ** | ||||||
16481119-G-T | 14369239-G-T | ** | ||||||
16481124-T-G | 14369244-T-G | ** | ||||||
16484302-C-A | 14372422-C-A | ** | ||||||
16656738-C-A | 14544858-C-A | ** | ||||||
16700173-C-A | 14588293-C-A | ** | ||||||
16778027-T-C | 14666147-T-C | ** | ||||||
16929531-G-C | 14817651-G-C | ** | ||||||
17278322-G-T | 15166442-G-T | ** | ||||||
17306287-C-A | 15194407-C-A | ** | ||||||
17333997-C-T | 15222117-C-T | ** | ||||||
17334000-C-A | 15222120-C-A | ** | ||||||
17334004-C-T | 15222124-C-T | ** | ||||||
17334009-T-C | 15222129-T-C | ** | ||||||
17334016-G-C | 15222136-G-C | FGC32367 | ** | |||||
17343091-T-G | 15231211-T-G | ** | ||||||
17420881-T-C | 15309001-T-C | ** | ||||||
17464417-C-A | 15352537-C-A | ** | ||||||
17492173-C-A | 15380293-C-A | ** | ||||||
17544041-C-A | 15432161-C-A | ** | ||||||
17616995-A-AC | 15505115-A-AC | ** | ||||||
17633830-G-A | 15521950-G-A | ** | ||||||
17682546-C-A | 15570666-C-A | ** | ||||||
17714675-C-A | 15602795-C-A | ** | ||||||
17789611-C-A | 15677731-C-A | ** | ||||||
17842242-C-G | 15730362-C-G | ** | ||||||
17863414-G-T | 15751534-G-T | ** | ||||||
18125521-T-G | 16013641-T-G | ** | ||||||
18189574-C-A | 16077694-C-A | ** | ||||||
18305587-A-C | 16193707-A-C | P6_Prx | ** | |||||
18305605-A-C | 16193725-A-C | P6_Prx | ** | |||||
18305606-G-T | 16193726-G-T | P6_Prx | ** | |||||
18305623-A-C | 16193743-A-C | P6_Prx | ** | |||||
18305625-G-T | 16193745-G-T | P6_Prx | ** | |||||
18401300-A-G | 16289420-A-G | P6_Gap | ** | |||||
18480256-G-T | 16368376-G-T | P6_Dst | ** | |||||
18567808-TTATA-T | 16455928-TTATA-T | ** | ||||||
18569672-T-A | 16457792-T-A | ** | ||||||
18625535-G-T | 16513655-G-T | ** | ||||||
18780275-T-A | 16668395-T-A | ** | ||||||
18824487-T-C | 16712607-T-C | ** | ||||||
18838810-C-G | 16726930-C-G | ** | ||||||
18955625-C-A | 16843745-C-A | ** | ||||||
18986049-C-A | 16874169-C-A | FT91296 | ** | |||||
19004785-A-G | 16892905-A-G | ** | ||||||
19031488-G-T | 16919608-G-T | ** | ||||||
19031499-G-T | 16919619-G-T | ** | ||||||
19031503-A-G | 16919623-A-G | ** | ||||||
19031509-T-G | 16919629-T-G | ** | ||||||
19138904-C-T | 17027024-C-T | ** | ||||||
19161094-C-A | 17049214-C-A | ** | ||||||
19183811-TTTC-T | 17071931-TTTC-T | ** | ||||||
19477487-C-A | 17365607-C-A | ** | ||||||
19479375-A-T | 17367495-A-T | ** | ||||||
19504078-G-A | 17392198-G-A | ** | ||||||
19508367-C-A | 17396487-C-A | ** | ||||||
19529768-T-C | 17417888-T-C | ** | ||||||
19531312-G-T | 17419432-G-T | ** | ||||||
19671310-G-T | 17559430-G-T | P5_Prx | ** | |||||
19671606-C-A | 17559726-C-A | FT68894 | P5_Prx | ** | ||||
19794388-C-A | 17682508-C-A | P5_Prx | ** | |||||
19882162-CTTTTTTA-C | 17770282-CTTTTTTA-C | P5_Prx | ** | |||||
20306149-A-T | 18144263-A-T | P5_Dst | ** | |||||
20306168-A-T | 18144282-A-T | P5_Dst | ** | |||||
20569614-C-CAA | 18407728-C-CAA | P5_Dst | 33×A | ** | ||||
20603777-C-G | 18441891-C-G | P5_Dst | ** | |||||
20603788-A-G | 18441902-A-G | P5_Dst | ** | |||||
20603817-A-G | 18441931-A-G | P5_Dst | ** | |||||
20749622-G-A | 18587736-G-A | P4_Prx | ** | |||||
20749659-A-C | 18587773-A-C | P4_Prx | ** | |||||
20749673-C-T | 18587787-C-T | P4_Prx | ** | |||||
21072389-A-C | 18910503-A-C | ** | ||||||
21076947-G-T | 18915061-G-T | ** | ||||||
21076957-T-G | 18915071-T-G | ** | ||||||
21189101-C-A | 19027215-C-A | F3146 | ** | |||||
21195822-C-A | 19033936-C-A | ** | ||||||
21308207-C-A | 19146321-C-A | ** | ||||||
21372406-C-A | 19210520-C-A | ** | ||||||
21394200-T-C | 19232314-T-C | ** | ||||||
21394240-G-T | 19232354-G-T | ** | ||||||
21394242-A-G | 19232356-A-G | ** | ||||||
21885668-C-A | 19723782-C-A | ** | ||||||
21895507-C-T | 19733621-C-T | ** | ||||||
21935208-C-T | 19773322-C-T | ** | ||||||
21979900-G-T | 19818014-G-T | ** | ||||||
21984281-A-G | 19822395-A-G | ** | ||||||
21984289-C-T | 19822403-C-T | ** | ||||||
21984298-G-C | 19822412-G-C | ** | ||||||
21984302-G-A | 19822416-G-A | ** | ||||||
21984307-T-A | 19822421-T-A | ** | ||||||
21987294-A-G | 19825408-A-G | ** | ||||||
22040956-T-G | 19879070-T-G | ** | ||||||
22052669-C-A | 19890783-C-A | ** | ||||||
22128567-C-A | 19966681-C-A | ** | ||||||
22200436-C-A | 20038550-C-A | ** | ||||||
22247366-A-C | 20085480-A-C | DYZ19 | ** | |||||
22277597-A-G | 20115711-A-G | DYZ19 | ** | |||||
22436103-C-A | 20274217-C-A | DYZ19 | ** | |||||
22436127-A-C | 20274241-A-C | DYZ19 | ** | |||||
22629625-T-A | 20467739-T-A | ** | ||||||
22720498-T-A | 20558612-T-A | ** | ||||||
22720506-C-G | 20558620-C-G | ** | ||||||
22797618-C-A | 20635732-C-A | ** | ||||||
23029940-C-T | 20868054-C-T | ** | ||||||
23049335-C-A | 20887449-C-A | ** | ||||||
23096644-G-T | 20934758-G-T | ** | ||||||
23192041-A-C | 21030155-A-C | ** | ||||||
23311051-G-A | 21149165-G-A | ** | ||||||
23311084-T-C | 21149198-T-C | ** | ||||||
23359393-C-A | 21197507-C-A | ** | ||||||
23449262-G-A | 21287376-G-A | ** | ||||||
23449263-G-A | 21287377-G-A | ** | ||||||
23449272-G-A | 21287386-G-A | ** | ||||||
23449280-T-G | 21287394-T-G | ** | ||||||
23600213-C-A | 21438327-C-A | ** | ||||||
23623472-T-C | 21461586-T-C | ** | ||||||
23625439-G-T | 21463553-G-T | ** | ||||||
23790430-C-A | 21628544-C-A | ** | ||||||
23855753-G-T | 21693867-G-T | ** | ||||||
23899378-G-T | 21737492-G-T | ** | ||||||
23899401-CG-C | 21737515-CG-C | 17×GT | ** | |||||
24305595-G-A | 22159448-G-A | P3_t1 | ** | |||||
24376402-A-T | 22230255-A-T | ** | ||||||
24422066-T-C | 22275919-T-C | ** | ||||||
24422067-G-T | 22275920-G-T | ** | ||||||
24611466-G-A | 22465319-G-A | P3_t2 | ** | |||||
24636818-A-C | 22490671-A-C | P3_t2 | ** | |||||
25912306-T-C | 23766159-T-C | P1_Y1 | ** | |||||
25971069-G-T | 23824922-G-T | P1_Y1 | ** | |||||
25971070-T-G | 23824923-T-G | P1_Y1 | ** | |||||
25971079-T-A | 23824932-T-A | P1_Y1 | ** | |||||
25971092-A-C | 23824945-A-C | P1_Y1 | ** | |||||
25971108-C-G | 23824961-C-G | P1_Y1 | ** | |||||
25971113-C-G | 23824966-C-G | P1_Y1 | ** | |||||
25997709-C-A | 23851562-C-A | P1_Y1 | ** | |||||
25997728-T-G | 23851581-T-G | P1_Y1 | ** | |||||
25997747-C-T | 23851600-C-T | P1_Y1 | ** | |||||
25997766-C-A | 23851619-C-A | P1_Y1 | ** | |||||
25997775-A-C | 23851628-A-C | P1_Y1 | ** | |||||
25997782-T-G | 23851635-T-G | P1_Y1 | ** | |||||
26065280-C-A | 23919133-C-A | P1_Y1 | ** | |||||
26092614-G-T | 23946467-G-T | P1_Y1 | ** | |||||
26092625-T-G | 23946478-T-G | P1_Y1 | ** | |||||
26092645-G-T | 23946498-G-T | P1_Y1 | ** | |||||
26092651-G-T | 23946504-G-T | P1_Y1 | ** | |||||
26401965-A-C | 24255818-A-C | P1_Y1 | ** | |||||
26401978-C-A | 24255831-C-A | P1_Y1 | ** | |||||
26401991-C-A | 24255844-C-A | P1_Y1 | ** | |||||
26401996-A-C | 24255849-A-C | P1_Y1 | ** | |||||
26402004-T-C | 24255857-T-C | P1_Y1 | ** | |||||
26402011-A-C | 24255864-A-C | P1_Y1 | ** | |||||
26402024-T-C | 24255877-T-C | P1_Y1 | ** | |||||
26402029-C-A | 24255882-C-A | P1_Y1 | ** | |||||
26565432-T-G | 24419285-T-G | FGC45454 | P1_g2 | ** | ||||
27507586-T-TGC | 25361439-T-TGC | P1_Y2 | ** | |||||
27515986-C-A | 25369839-C-A | P1_Y2 | ** | |||||
27515992-C-A | 25369845-C-A | P1_Y2 | ** | |||||
27886999-CA-C | 25740852-CA-C | P1_Y2 | ** | |||||
27887042-C-A | 25740895-C-A | P1_Y2 | ** | |||||
27932239-T-A | 25786092-T-A | P1_Y2 | ** | |||||
27932244-C-A | 25786097-C-A | P1_Y2 | ** | |||||
27932257-C-A | 25786110-C-A | P1_Y2 | ** | |||||
27932269-C-A | 25786122-C-A | P1_Y2 | ** | |||||
27932281-G-C | 25786134-G-C | P1_Y2 | ** | |||||
27932295-C-A | 25786148-C-A | P1_Y2 | ** | |||||
27932310-C-A | 25786163-C-A | P1_Y2 | ** | |||||
27971693-C-A | 25825546-C-A | P1_Y2 | ** | |||||
28099580-C-G | 25953433-C-G | P1_Y2 | ** | |||||
28429931-C-A | 26283784-C-A | P1_gr2 | ** | |||||
28429935-C-G | 26283788-C-G | P1_gr2 | ** | |||||
28478714-G-T | 26332567-G-T | ** | ||||||
28590513-A-C | 26444366-A-C | ** | ||||||
28653183-T-C | 26507036-T-C | ** | ||||||
28660064-C-G | 26513917-C-G | ** | ||||||
28699930-G-T | 26553783-G-T | ** | ||||||
28699937-A-C | 26553790-A-C | ** | ||||||
28782101-C-A | 26635954-C-A | ** | ||||||
56842145-T-C | ** | |||||||
56842169-A-C | ** | |||||||
56842218-C-G | ** | |||||||
56847434-T-C | ** | |||||||
56851095-T-A | ** | |||||||
56851125-G-T | ** | |||||||
24730-G-T | ** | |||||||
27906-T-G | ** | |||||||
6916918-C-A | 7048877-C-A | *** | ||||||
10673909-A-T | *** | |||||||
2783734-C-CAA | 2915693-C-CAA | 15×A | *** | |||||
10929652-C-A | *** | |||||||
13585508-C-A | 11429832-C-A | *** | ||||||
10690938-C-A | *** | |||||||
10781658-C-A | *** | |||||||
7075240-CAAAAA-C | 7207199-CAAAAA-C | 17×A | *** | |||||
13449395-C-A | 11293719-C-A | *** | ||||||
7137307-AT-A | 7269266-AT-A | 8×T | *** | |||||
5214317-C-A | 5346276-C-A | *** | ||||||
10992991-T-C | *** | |||||||
21084312-CAT-C,CATAT | 18922426-CAT-C,CATAT | 11×AT | *** | |||||
13859417-A-C | 11738711-A-C | DYZ17 | *** | |||||
2668056-C-A | 2800015-C-A | *** | ||||||
3651058-G-T | 3783017-G-T | *** | ||||||
3831297-A-G | 3963256-A-G | *** | ||||||
3876877-C-A | 4008836-C-A | *** | ||||||
7139481-C-A | 7271440-C-A | *** | ||||||
7166742-C-A | 7298701-C-A | *** | ||||||
7187584-CTTT-C | 7319543-CTTT-C | 15×T | *** | |||||
7400869-TAA-T | 7532828-TAA-T | *** | ||||||
7637810-T-C | 7769769-T-C | *** | ||||||
7714594-C-A | 7846553-C-A | *** | ||||||
7998579-C-A | 8130538-C-A | *** | ||||||
8049711-C-A | 8181670-C-A | *** | ||||||
8810314-A-G | 8942273-A-G | *** | ||||||
9042302-C-A | 9204693-C-A | *** | ||||||
9089454-C-A | 9251845-C-A | *** | ||||||
9979027-G-T | 10141418-G-T | *** | ||||||
10012640-C-A | 10175031-C-A | *** | ||||||
10017865-G-T | 10180256-G-T | *** | ||||||
10045592-T-C | 10207983-T-C | *** | ||||||
10911652-C-A | *** | |||||||
10939286-C-G | *** | |||||||
10994094-C-T | *** | |||||||
11021125-C-A | *** | |||||||
13202594-C-A | 11046918-C-A | *** | ||||||
13836902-G-T | 11716196-G-T | DYZ17 | *** | |||||
13859393-T-G | 11738687-T-G | DYZ17 | *** | |||||
14065957-C-A | 11945251-C-A | A15006 | *** | |||||
14240611-C-A | 12119905-C-A | *** | ||||||
14824120-G-C | 12712187-G-C | *** | ||||||
15160639-C-A | 13048725-C-A | *** | ||||||
15180316-G-T | 13068402-G-T | *** | ||||||
15427325-C-A | 13315445-C-A | *** | ||||||
15479009-C-A | 13367129-C-A | *** | ||||||
15924988-C-A | 13813108-C-A | *** | ||||||
16531083-CAAA-C,CA | 14419203-CAAA-C,CA | 24×A | *** | |||||
17232657-A-G | 15120777-A-G | *** | ||||||
17528022-C-A | 15416142-C-A | *** | ||||||
17616563-C-A | 15504683-C-A | *** | ||||||
17768123-G-A | 15656243-G-A | *** | ||||||
17801907-C-A | 15690027-C-A | *** | ||||||
18085711-G-T | 15973831-G-T | *** | ||||||
18633557-C-A | 16521677-C-A | *** | ||||||
18724961-C-A | 16613081-C-A | *** | ||||||
18934005-C-A | 16822125-C-A | *** | ||||||
19058152-G-T | 16946272-G-T | *** | ||||||
19453836-G-T | 17341956-G-T | *** | ||||||
19563441-C-A | 17451561-C-A | *** | ||||||
21128259-TAA-T,TAAAA | 18966373-TAA-T,TAAAA | 18×A | *** | |||||
21457475-C-T | 19295589-C-T | *** | ||||||
21714521-G-A | 19552635-G-A | *** | ||||||
22037360-C-A | 19875474-C-A | *** | ||||||
22857842-C-A | 20695956-C-A | *** | ||||||
23063229-C-A | 20901343-C-A | *** | ||||||
23231685-C-A | 21069799-C-A | *** | ||||||
23475991-C-A | 21314105-C-A | *** | ||||||
24462539-C-A | 22316392-C-A | *** | ||||||
28784535-C-A | 26638388-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.