Keeffe
BigY2: 206512MDKA Birth:

Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 206512 |
---|---|---|---|---|---|---|---|---|
28817723-C-A | 26671576-C-A | A* | ||||||
20801994-C-T | 18640108-C-T | P4_Prx | A* | |||||
7838941-A-C | 7970900-A-C | BY68103 | Y | Y | + | |||
17884993-G-T | 15773113-G-T | BY118104 | Y | + | ||||
13450931-CAT-C,TAT | 11295255-CAT-C,TAT | * | ||||||
16547894-C-CA | 14436014-C-CA | 11×A | * | |||||
22316702-C-T | 20154816-C-T | DYZ19 | * | |||||
10905746-A-T | ** | |||||||
10912351-T-G | ** | |||||||
10914281-G-T | ** | |||||||
10922470-A-C | ** | |||||||
10925510-A-ACTCCCATCTT | ** | |||||||
10922476-T-G | ** | |||||||
10904306-C-A | ** | |||||||
10930708-C-G | ** | |||||||
10932571-A-T | ** | |||||||
10932927-C-A | ** | |||||||
10936616-G-T | ** | |||||||
10938598-C-T | ** | |||||||
10938625-A-C | FT369737 | ** | ||||||
10905720-A-T | ** | |||||||
13709512-A-C | 11553836-A-C | ** | ||||||
10900818-G-T | ** | |||||||
10846298-C-A | ** | |||||||
10835536-C-T | ** | |||||||
10835562-A-ATCC | ** | |||||||
10835564-T-C | ** | |||||||
10836525-A-T | ** | |||||||
10843695-C-CAATGA | ** | |||||||
10843798-C-A | ** | |||||||
10846299-C-T | ** | |||||||
10894837-G-T | ** | |||||||
10846706-C-A | ** | |||||||
10864896-C-A | ** | |||||||
10879465-T-G | ** | |||||||
10880355-T-G | ** | |||||||
10889751-A-C | ** | |||||||
10894545-C-A | ** | |||||||
10945420-C-CTTTTG | ** | |||||||
10938631-C-G | ** | |||||||
10952247-C-T | ** | |||||||
10950486-C-A | ** | |||||||
13217506-G-A | 11061830-G-A | ** | ||||||
11017482-C-T | ** | |||||||
11019704-C-T | ** | |||||||
11021490-TCCACTCCACTCCTCC-T | ** | |||||||
11026508-A-T | ** | |||||||
11027390-T-A | ** | |||||||
11031328-T-G | ** | |||||||
13234877-G-T | 11079201-G-T | ** | ||||||
11015729-T-A | ** | |||||||
13263045-C-A | 11107369-C-A | ** | ||||||
13457468-A-T | 11301792-A-T | ** | ||||||
13457792-A-G | 11302116-A-G | ** | ||||||
13461708-G-A | 11306032-G-A | ** | ||||||
13525239-C-G | 11369563-C-G | ** | ||||||
13571048-C-A | 11415372-C-A | ** | ||||||
11015731-C-G | ** | |||||||
11004119-C-A | ** | |||||||
10951720-C-T | ** | |||||||
10977813-T-G | ** | |||||||
10814323-C-A | ** | |||||||
10954108-T-C | ** | |||||||
10954978-T-G | ** | |||||||
10970746-A-T | ** | |||||||
10973952-C-CGCTA | ** | |||||||
10973966-C-CTCATGT | ** | |||||||
10988821-A-T | ** | |||||||
11001138-G-T | ** | |||||||
10989063-G-T | ** | |||||||
10989067-C-T | ** | |||||||
10989068-A-T | ** | |||||||
10992425-C-A | ** | |||||||
10996088-CTCCTG-C | ** | |||||||
10997953-G-T | ** | |||||||
10999721-T-C | ** | |||||||
10835286-C-G | ** | |||||||
10807926-G-T | ** | |||||||
10812422-C-A | ** | |||||||
7966995-T-G | 8098954-T-G | ** | ||||||
7243398-T-A | 7375357-T-A | ** | ||||||
7322896-T-G | 7454855-T-G | ** | ||||||
7363690-C-A | 7495649-C-A | ** | ||||||
7461071-C-A | 7593030-C-A | IR1_L | ** | |||||
7573010-G-A | 7704969-G-A | ** | ||||||
7580013-T-G | 7711972-T-G | ** | ||||||
7990507-C-A | 8122466-C-A | ** | ||||||
7165859-C-A | 7297818-C-A | ** | ||||||
8692194-G-T | 8824153-G-T | ** | ||||||
8912692-C-A | 9044651-C-A | ** | ||||||
9119764-C-A | ** | |||||||
9025181-T-C | 9187572-T-C | ** | ||||||
9025182-T-G | 9187573-T-G | ** | ||||||
9063600-C-A | 9225991-C-A | ** | ||||||
7240350-A-T | 7372309-A-T | ** | ||||||
7160531-G-A | 7292490-G-A | ** | ||||||
9592709-A-AC | 9755100-A-AC | IR3_Prx | ** | |||||
6624900-G-T | 6756859-G-T | ** | ||||||
5292951-C-A | 5424910-C-A | ** | ||||||
5308110-C-A | 5440069-C-A | ** | ||||||
5863510-A-C | 5995469-A-C | ** | ||||||
6392651-C-G | 6524610-C-G | ** | ||||||
6448793-G-T | 6580752-G-T | ** | ||||||
6461876-T-G | 6593835-T-G | ** | ||||||
6625040-C-T | 6756999-C-T | ** | ||||||
7039958-A-C | 7171917-A-C | ** | ||||||
6654520-C-G | 6786479-C-G | ** | ||||||
6682396-C-A | 6814355-C-A | ** | ||||||
6682416-C-A | 6814375-C-A | ** | ||||||
6684316-T-G | 6816275-T-G | ** | ||||||
6765917-C-A | 6897876-C-A | ** | ||||||
6977167-T-G | 7109126-T-G | ** | ||||||
9493429-C-A | 9655820-C-A | ** | ||||||
9930048-G-T | 10092439-G-T | ** | ||||||
10811688-T-G | ** | |||||||
10783362-T-A | ** | |||||||
10752380-A-G | ** | |||||||
10752424-TATC-T | ** | |||||||
10752458-C-A | ** | |||||||
10754406-G-T | ** | |||||||
10769382-C-G | ** | |||||||
10782629-C-A | ** | |||||||
10786901-T-A | FT431176 | ** | ||||||
10744884-T-A | ** | |||||||
10787553-A-T | ** | |||||||
10796146-C-G | ** | |||||||
10800820-TACTCC-T | ** | |||||||
10802226-C-T | ** | |||||||
13705488-A-G | 11549812-A-G | ** | ||||||
10809186-T-TC | ** | |||||||
10750778-T-A | ** | |||||||
10744883-T-C | ** | |||||||
9945424-A-G | 10107815-A-G | FT373349 | ** | |||||
10678262-C-A | ** | |||||||
10034462-G-A | 10196853-G-A | ** | ||||||
10656452-A-T | ** | |||||||
10662079-C-A | ** | |||||||
10662123-T-A | ** | |||||||
10673501-C-G | ** | |||||||
10677238-G-T | ** | |||||||
10684889-A-T | ** | |||||||
10744879-T-A | ** | |||||||
10688192-C-G | ** | |||||||
10688206-A-AGTCCT | ** | |||||||
10689009-A-G | ** | |||||||
10693325-T-C | ** | |||||||
10693989-TC-T | ** | |||||||
10744865-C-T | ** | |||||||
13623323-T-C | 11467647-T-C | ** | ||||||
11656845-A-C | ** | |||||||
13705518-A-G | 11549842-A-G | ** | ||||||
23086360-G-T | 20924474-G-T | ** | ||||||
22022821-T-G | 19860935-T-G | ** | ||||||
22238336-T-C | 20076450-T-C | DYZ19 | ** | |||||
22253229-A-C | 20091343-A-C | DYZ19 | ** | |||||
22422124-A-T | 20260238-A-T | DYZ19 | ** | |||||
22766397-A-T | 20604511-A-T | ** | ||||||
22854936-T-A | 20693050-T-A | ** | ||||||
23200695-T-G | 21038809-T-G | ** | ||||||
21580434-T-G | 19418548-T-G | ** | ||||||
23440461-T-G | 21278575-T-G | ** | ||||||
23514443-C-A | 21352557-C-A | ** | ||||||
23518210-C-G | 21356324-C-G | ** | ||||||
23787598-G-T | 21625712-G-T | ** | ||||||
23831290-T-A | 21669404-T-A | ** | ||||||
21750829-G-T | ** | |||||||
21795199-A-C | 19633313-A-C | ** | ||||||
21459040-G-T | 19297154-G-T | ** | ||||||
24512396-C-A | 22366249-C-A | ** | ||||||
20579177-CA-C | 18417291-CA-C | P5_Dst | ** | |||||
20051110-C-A | 17939230-C-A | P5_Prx | ** | |||||
20096059-T-TC | 17984179-T-TC | P5_Dst | ** | |||||
20409523-C-A | 18247637-C-A | P5_Dst | ** | |||||
20434788-TA-T | 18272902-TA-T | P5_Dst | ** | |||||
20569586-G-T | 18407700-G-T | P5_Dst | ** | |||||
20579168-G-GTATAATATATA | 18417282-G-GTATAATATATA | P5_Dst | ** | |||||
20579181-C-T | 18417295-C-T | P5_Dst | ** | |||||
21241883-A-C | 19079997-A-C | ** | ||||||
20629070-T-A | 18467184-T-A | P4_Prx | ** | |||||
20707666-C-A | 18545780-C-A | P4_Prx | ** | |||||
20888645-T-A | 18726759-T-A | P4_Dst | ** | |||||
20888654-C-A | 18726768-C-A | P4_Dst | ** | |||||
20953990-A-AC | 18792104-A-AC | P4_Dst | ** | |||||
21133581-G-A | 18971695-G-A | ** | ||||||
21780536-T-C | ** | |||||||
25947224-T-G | 23801077-T-G | P1_Y1 | ** | |||||
19728332-T-A | 17616452-T-A | P5_Prx | ** | |||||
56839728-T-C | ** | |||||||
28798063-G-A | 26651916-G-A | ** | ||||||
28803971-T-G | 26657824-T-G | ** | ||||||
28812287-A-C | 26666140-A-C | ** | ||||||
28812304-T-A | 26666157-T-A | ** | ||||||
28812606-T-C | 26666459-T-C | ** | ||||||
28819317-A-C | 26673170-A-C | ** | ||||||
56845351-G-T | ** | |||||||
28730723-G-T | 26584576-G-T | ** | ||||||
56846597-G-T | ** | |||||||
56846706-G-T | ** | |||||||
56847478-C-A | ** | |||||||
16101-T-A | ** | |||||||
28608-C-G | ** | |||||||
28616-A-T | ** | |||||||
28773657-C-A | 26627510-C-A | ** | ||||||
28545261-A-G | 26399114-A-G | ** | ||||||
25947268-T-G | 23801121-T-G | P1_Y1 | ** | |||||
28006382-A-T | 25860235-A-T | P1_Y2 | ** | |||||
25954185-CCTTT-C | 23808038-CCTTT-C | P1_Y1 | ** | |||||
26024581-G-T | 23878434-G-T | P1_Y1 | ** | |||||
27570915-G-T | 25424768-G-T | P1_Y2 | ** | |||||
27644240-A-T | 25498093-A-T | P1_Y2 | ** | |||||
27644253-A-T | 25498106-A-T | P1_Y2 | ** | |||||
27815727-G-T | 25669580-G-T | P1_Y2 | ** | |||||
28006395-C-G | 25860248-C-G | P1_Y2 | ** | |||||
28473992-A-T | 26327845-A-T | ** | ||||||
28006404-A-C | 25860257-A-C | P1_Y2 | ** | |||||
28006406-A-T | 25860259-A-T | P1_Y2 | ** | |||||
28006416-A-C | 25860269-A-C | P1_Y2 | ** | |||||
28006427-A-C | 25860280-A-C | P1_Y2 | ** | |||||
28473827-A-C | 26327680-A-C | ** | ||||||
28473906-C-A | 26327759-C-A | ** | ||||||
19793284-G-T | 17681404-G-T | P5_Prx | ** | |||||
19554319-C-A | 17442439-C-A | ** | ||||||
13710386-G-T | 11554710-G-T | ** | ||||||
14570847-A-T | 12459047-A-T | ** | ||||||
14267943-T-G | 12147237-T-G | ** | ||||||
14270763-G-T | 12150057-G-T | ** | ||||||
14270830-G-T | 12150124-G-T | ** | ||||||
14302015-G-T | 12181309-G-T | ** | ||||||
14324484-C-T | 12203778-C-T | ** | ||||||
14546770-C-A | 12434971-C-A | ** | ||||||
14570885-C-G | 12459085-C-G | ** | ||||||
14219758-A-C | 12099052-A-C | ** | ||||||
14606474-C-A | 12494676-C-A | ** | ||||||
14716170-G-T | 12604237-G-T | ** | ||||||
14908357-T-G | 12796424-T-G | ** | ||||||
15074662-A-C | 12962752-A-C | ** | ||||||
15178906-G-T | 13066992-G-T | ** | ||||||
15183759-T-C | 13071845-T-C | ** | ||||||
14267928-T-G | 12147222-T-G | ** | ||||||
14212270-A-G | 12091564-A-G | ** | ||||||
15396433-G-T | 13284553-G-T | ** | ||||||
11664073-A-T | ** | |||||||
11651634-T-C | ** | |||||||
5241399-A-TG | 5373358-A-TG | ** | ||||||
11657352-C-A | ** | |||||||
11657436-T-A | ** | |||||||
11659840-C-T | FGC82614 | ** | ||||||
11663578-A-C | ** | |||||||
11666864-A-G | ** | |||||||
14089068-G-A | 11968362-G-A | FTB80772 | ** | |||||
11666868-C-T | ** | |||||||
11666876-A-G | ** | |||||||
11672430-A-C | ** | |||||||
11677467-C-T | ** | |||||||
13998125-G-C | 11877419-G-C | ** | ||||||
14069092-C-A | 11948386-C-A | ** | ||||||
15209300-C-A | 13097386-C-A | ** | ||||||
15450188-T-C | 13338308-T-C | ** | ||||||
19461317-G-A | 17349437-G-A | FT181846 | ** | |||||
17884511-C-A | 15772631-C-A | ** | ||||||
16834757-A-T | 14722877-A-T | ** | ||||||
16834788-A-T | 14722908-A-T | ** | ||||||
17449480-T-A | 15337600-T-A | ** | ||||||
17461938-C-A | 15350058-C-A | ** | ||||||
17627176-C-A | 15515296-C-A | ** | ||||||
17724249-T-C | 15612369-T-C | ** | ||||||
18057887-G-T | 15946007-G-T | ** | ||||||
16107454-T-TG | 13995574-T-TG | P8_Prx | ** | |||||
18353720-T-G | 16241840-T-G | P6_Prx | ** | |||||
18365677-C-A | 16253797-C-A | P6_Prx | ** | |||||
18767186-CTTTTT-C | 16655306-CTTTTT-C | 16×T | ** | |||||
18959240-AAT-A | 16847360-AAT-A | ** | ||||||
19436831-G-T | 17324951-G-T | ** | ||||||
19460288-C-T | 17348408-C-T | ** | ||||||
16427114-C-A | 14315234-C-A | Y69874 | ** | |||||
16104531-G-A | 13992651-G-A | P8_Prx | ** | |||||
15450201-G-A | 13338321-G-A | ** | ||||||
15864147-G-T | 13752267-G-T | ** | ||||||
15599869-G-T | 13487989-G-T | ** | ||||||
15619477-C-A | 13507597-C-A | ** | ||||||
15647821-C-A | 13535941-C-A | ** | ||||||
15653517-C-T | 13541637-C-T | ** | ||||||
15655203-G-T | 13543323-G-T | ** | ||||||
15770216-T-G | 13658336-T-G | ** | ||||||
15881961-G-A | 13770081-G-A | ** | ||||||
16029552-C-A | 13917672-C-A | ** | ||||||
15881973-C-CAGG | 13770093-C-CAGG | ** | ||||||
15882004-C-G | 13770124-C-G | ** | ||||||
15882011-T-C | 13770131-T-C | ** | ||||||
15882022-T-C | 13770142-T-C | ** | ||||||
15918570-C-G | 13806690-C-G | ** | ||||||
16008890-G-T | 13897010-G-T | ** | ||||||
5241417-GA-G | 5373376-GA-G | ** | ||||||
5576733-A-C | 5708692-A-C | ** | ||||||
5195805-A-C | 5327764-A-C | ** | ||||||
11031397-A-T | ** | |||||||
19043152-C-A | 16931272-C-A | ** | ||||||
10973958-C-T | ** | |||||||
10666573-C-T | ** | |||||||
10865998-T-A | ** | |||||||
10770667-C-T | ** | |||||||
13255635-C-A | 11099959-C-A | ** | ||||||
16107443-T-TG | 13995563-T-TG | P8_Prx | ** | |||||
10744864-C-A | FT429298 | ** | ||||||
10866012-C-A | ** | |||||||
10770607-C-A | FT73089 | ** | ||||||
10889572-C-A | ** | |||||||
11031421-C-T | ** | |||||||
11031415-C-G | ** | |||||||
11031411-C-G | ** | |||||||
11031396-C-T | ** | |||||||
10959028-T-C | ** | |||||||
10954101-T-C | ** | |||||||
10983341-C-G | ** | |||||||
2853491-C-A | 2985450-C-A | ** | ||||||
28794191-T-A | 26648044-T-A | ** | ||||||
17203327-C-CTTT | 15091447-C-CTTT | 21×T | ** | |||||
28006374-AC-A | 25860227-AC-A | P1_Y2 | ** | |||||
11000187-G-A | ** | |||||||
13709520-G-C | 11553844-G-C | ** | ||||||
11031395-C-T | ** | |||||||
10958978-T-C | ** | |||||||
10993116-A-T | ** | |||||||
28798684-G-A | 26652537-G-A | ** | ||||||
13700609-T-G | 11544933-T-G | ** | ||||||
24264736-AACAC-A | 22118589-AACAC-A | P3_b1 | 9×AC | ** | ||||
5710516-C-A | 5842475-C-A | ** | ||||||
56861812-CAAAAA-C | 26×A | ** | ||||||
13881365-C-A | 11760659-C-A | ** | ||||||
10792770-T-C | ** | |||||||
5152645-G-T | 5284604-G-T | ** | ||||||
13271204-TAA-T | 11115528-TAA-T | 12×A | ** | |||||
13502432-C-A | 11346756-C-A | ** | ||||||
10751213-C-A | ** | |||||||
15848742-C-A | 13736862-C-A | ** | ||||||
10759377-G-C | ** | |||||||
18645948-C-A | 16534068-C-A | 10×T | ** | |||||
17794234-CTCTT-C | 15682354-CTCTT-C | 4×TCTT | ** | |||||
11021738-G-T | ** | |||||||
28812632-G-T | 26666485-G-T | ** | ||||||
10868379-C-A | ** | |||||||
10767648-G-A | ** | |||||||
27540917-AACAC-A | 25394770-AACAC-A | P1_Y2 | 24×AC | ** | ||||
7258736-C-A | 7390695-C-A | ** | ||||||
10682580-T-C | ** | |||||||
21766277-AC-A | ** | |||||||
6465353-C-A | 6597312-C-A | ** | ||||||
10879438-G-A | FT435243 | ** | ||||||
10945202-A-T | ** | |||||||
10808824-T-A | ** | |||||||
10808844-C-T | ** | |||||||
10808845-A-G | ** | |||||||
10808855-C-A | ** | |||||||
13705486-G-T | 11549810-G-T | ** | ||||||
13888656-G-T | 11767950-G-T | ** | ||||||
10827046-C-T | ** | |||||||
11015747-T-C | ** | |||||||
13453283-TGATTC-T | 11297607-TGATTC-T | ** | ||||||
22268541-C-G | 20106655-C-G | DYZ19 | ** | |||||
14888076-CTTT-C | 12776142-CTTT-C | 17×T | ** | |||||
9936518-C-A | 10098909-C-A | ** | ||||||
27570924-C-A | 25424777-C-A | P1_Y2 | ** | |||||
15379957-C-A | 13268077-C-A | ** | ||||||
20989154-C-A | 18827268-C-A | P4_Dst | 19×AT | ** | ||||
10989046-C-A | ** | |||||||
22505894-C-G | 20344008-C-G | DYZ19 | ** | |||||
10827084-C-A | ** | |||||||
10666507-T-G | ** | |||||||
10666503-C-A | ** | |||||||
10666493-T-C | ** | |||||||
10666488-C-T | ** | |||||||
10666482-G-C | ** | |||||||
14609799-C-A | 12498001-C-A | 23×A | ** | |||||
7414275-C-A | 7546234-C-A | ** | ||||||
10692322-C-T | ** | |||||||
10945450-G-C | ** | |||||||
10889563-A-C | ** | |||||||
11031408-C-T | ** | |||||||
9953233-C-CT | 10115624-C-CT | 11×T | ** | |||||
10900896-A-T | ** | |||||||
10900866-T-C | ** | |||||||
10801520-C-A | ** | |||||||
10666515-T-A | ** | |||||||
13486804-T-A | 11331128-T-A | ** | ||||||
13453291-T-C | 11297615-T-C | ** | ||||||
17070722-C-A | 14958842-C-A | ** | ||||||
13846672-G-A | 11725966-G-A | ** | ||||||
13463721-T-G | 11308045-T-G | ** | ||||||
8333701-T-C | 8465660-T-C | FGC18153 Z43715 | ** | |||||
21574099-T-C | 19412213-T-C | Z8251 | ** | |||||
22238349-T-C | 20076463-T-C | DYZ19 | ** | |||||
58979383-C-A | 56833236-C-A | ** | ||||||
26170448-AAGC-A | 24024301-AAGC-A | P1_Y1 | ** | |||||
18982594-AG-A | 16870714-AG-A | ** | ||||||
15364058-TCAAAA-T | 13252178-TCAAAA-T | ** | ||||||
28707819-G-T | 26561672-G-T | PF3283 | 5×TTTGT | ** | ||||
19318178-C-T | 17206298-C-T | 28×T | ** | |||||
24904674-G-GTTTTT | 22758527-G-GTTTTT | g1 | 21×T | ** | ||||
10666514-C-A | ** | |||||||
10666529-C-A | ** | |||||||
10801554-C-T | ** | |||||||
22649594-C-A | 20487708-C-A | ** | ||||||
10759427-A-C | ** | |||||||
10801498-A-G | ** | |||||||
10801542-C-T | ** | |||||||
15396448-C-A | 13284568-C-A | ** | ||||||
28818210-T-A | 26672063-T-A | ** | ||||||
15881997-A-G | 13770117-A-G | ** | ||||||
23801733-CAAA-C | 21639847-CAAA-C | 31×A | ** | |||||
10959023-T-C | ** | |||||||
10875788-T-TTTAAC | ** | |||||||
10808861-T-G | ** | |||||||
10808865-A-C | ** | |||||||
11015739-C-A | ** | |||||||
10866029-T-C | ** | |||||||
10760707-C-G | ** | |||||||
7135273-C-A | 7267232-C-A | ** | ||||||
17128534-T-A | 15016654-T-A | FGC81685 | ** | |||||
10666530-C-A | ** | |||||||
11000450-T-C | ** | |||||||
10666542-C-A | ** | |||||||
10666553-A-C | ** | |||||||
10666557-C-A | ** | |||||||
27757824-C-A | 25611677-C-A | P1_Y2 | ** | |||||
10952237-C-A | ** | |||||||
10802218-C-T | ** | |||||||
10792754-A-T | ** | |||||||
28794233-G-C | 26648086-G-C | ** | ||||||
10866035-T-A | ** | |||||||
10866069-T-A | ** | |||||||
10866114-C-A | ** | |||||||
10987827-TCCATTCCATTC-T | ** | |||||||
13349590-G-GA | 11193914-G-GA | 9×A | ** | |||||
25985388-T-TG | 23839241-T-TG | P1_Y1 | ** | |||||
10034186-C-A | 10196577-C-A | ** | ||||||
11645513-A-T | ** | |||||||
10961053-C-T | ** | |||||||
4408824-C-A | 4540783-C-A | ** | ||||||
2708525-G-C | 2840484-G-C | ** | ||||||
2699077-T-C | 2831036-T-C | ** | ||||||
28814114-T-A | 26667967-T-A | ** | ||||||
10767676-C-CATTAT | ** | |||||||
10685845-G-T | ** | |||||||
20707735-C-A | 18545849-C-A | P4_Prx | ** | |||||
21476344-A-C | 19314458-A-C | ** | ||||||
18988969-C-A | 16877089-C-A | ** | ||||||
10797697-C-T | ** | |||||||
56839733-T-C | ** | |||||||
10925535-A-T | ** | |||||||
11018818-T-A | ** | |||||||
16345049-C-A | 14233169-C-A | ** | ||||||
15127082-C-A | 13015169-C-A | ** | ||||||
10982675-T-C | ** | |||||||
2775203-T-A | 2907162-T-A | ** | ||||||
19479276-C-A | 17367396-C-A | ** | ||||||
10997339-C-T | ** | |||||||
10868501-C-A | ** | |||||||
28812622-G-T | 26666475-G-T | ** | ||||||
10827044-T-A | ** | |||||||
10932935-C-A | ** | |||||||
10827076-CTGCAT-C | ** | |||||||
11669447-A-C | ** | |||||||
16060054-C-A | 13948174-C-A | ** | ||||||
10761885-T-C | ** | |||||||
22833802-C-A | 20671916-C-A | ** | ||||||
10678491-G-T | ** | |||||||
10921990-A-T | ** | |||||||
25525621-T-G | 23379474-T-G | P1_gr1 | ** | |||||
10879461-A-C | ** | |||||||
2740440-A-C | 2872399-A-C | ** | ||||||
2788377-A-T | 2920336-A-T | ** | ||||||
18997192-C-A | 16885312-C-A | ** | ||||||
3756125-C-A | 3888084-C-A | ** | ||||||
4897963-CAAAA-C | 5029922-CAAAA-C | 20×A | ** | |||||
4854852-C-A | 4986811-C-A | ** | ||||||
4795519-G-T | 4927478-G-T | ** | ||||||
4795432-A-C | 4927391-A-C | ** | ||||||
4775085-C-A | 4907044-C-A | ** | ||||||
4605145-C-A | 4737104-C-A | ** | ||||||
4527254-T-G | 4659213-T-G | ** | ||||||
4447285-A-G | 4579244-A-G | ** | ||||||
4413407-C-A | 4545366-C-A | ** | ||||||
4370350-G-T | 4502309-G-T | ** | ||||||
4075737-G-T | 4207696-G-T | ** | ||||||
4011584-T-A | 4143543-T-A | ** | ||||||
4011562-A-T | 4143521-A-T | ** | ||||||
3836779-C-A | 3968738-C-A | ** | ||||||
3696557-G-T | 3828516-G-T | ** | ||||||
2812774-A-T | 2944733-A-T | ** | ||||||
3233476-G-T | 3365435-G-T | ** | ||||||
2853474-G-C | 2985433-G-C | ** | ||||||
2853477-G-A | 2985436-G-A | ** | ||||||
2986043-A-T | 3118002-A-T | ** | ||||||
3051338-C-A | 3183297-C-A | ** | ||||||
3189234-G-T | 3321193-G-T | ** | ||||||
3228243-C-A | 3360202-C-A | ** | ||||||
3374207-G-T | 3506166-G-T | ** | ||||||
3678411-G-A | 3810370-G-A | ** | ||||||
3407850-T-G | 3539809-T-G | ** | ||||||
3523252-C-A | 3655211-C-A | ** | ||||||
3535940-C-A | 3667899-C-A | ** | ||||||
3593315-C-A | 3725274-C-A | ** | ||||||
3624583-C-A | 3756542-C-A | ** | ||||||
3627973-C-A | 3759932-C-A | ** | ||||||
19793272-A-T | 17681392-A-T | P5_Prx | ** | |||||
10827056-C-G | ** | |||||||
28665-T-C | ** | |||||||
13472147-T-A | 11316471-T-A | ** | ||||||
10801544-A-T | ** | |||||||
10988670-C-A | ** | |||||||
28804046-C-G | 26657899-C-G | ** | ||||||
11015920-C-A | ** | |||||||
10689034-A-T | ** | |||||||
7371210-C-A | 7503169-C-A | ** | ||||||
13963810-C-A | 11843104-C-A | ** | ||||||
10945442-A-G | ** | |||||||
28006411-T-A | 25860264-T-A | P1_Y2 | ** | |||||
24296457-AC-A | 22150310-AC-A | P3_t1 | ** | |||||
3654653-G-T | 3786612-G-T | ** | ||||||
10748293-A-ATTCCT | ** | |||||||
4931527-G-T | 5063486-G-T | ** | ||||||
22505886-C-A | 20344000-C-A | DYZ19 | ** | |||||
24247417-AC-A | 22101270-AC-A | P3_b1 | ** | |||||
26440497-G-T | 24294350-G-T | P1_Y1 | ** | |||||
15450199-T-A | 13338319-T-A | ** | ||||||
10995771-A-T | FT439645 | ** | ||||||
13253520-C-G | 11097844-C-G | ** | ||||||
20790990-T-G | 18629104-T-G | P4_Prx | ** | |||||
11649730-C-A | ** | |||||||
10872263-C-CTCCAT | ** | |||||||
10671195-C-T | ** | |||||||
10995767-T-A | ** | |||||||
6914-G-T | ** | |||||||
10972408-C-A | ** | |||||||
22423566-C-A | 20261680-C-A | DYZ19 | ** | |||||
10789765-A-T | ** | |||||||
10866006-C-G | FT434676 | ** | ||||||
10866019-T-A | ** | |||||||
10866027-C-T | ** | |||||||
22580046-G-T | 20418160-G-T | ** | ||||||
20815462-TACACAC-T | 18653576-TACACAC-T | P4_Gap | 12×AC | ** | ||||
10690969-C-A | ** | |||||||
10835291-C-A | ** | |||||||
16070711-G-GT | 13958831-G-GT | 8×T | ** | |||||
15259278-C-CAAA | 13147362-C-CAAA | 15×A | ** | |||||
3804786-C-A | 3936745-C-A | ** | ||||||
2812765-A-T | 2944724-A-T | ** | ||||||
10930066-T-A | ** | |||||||
8090892-C-A | 8222851-C-A | ** | ||||||
9938623-C-A | 10101014-C-A | ** | ||||||
10879399-A-T | ** | |||||||
10902244-C-T | ** | |||||||
56858271-C-A | ** | |||||||
11037969-A-C | ** | |||||||
10887404-ACT-A | ** | |||||||
7255041-CT-C | 7387000-CT-C | ** | ||||||
18892467-T-G | 16780587-T-G | ** | ||||||
10950434-C-T | ** | |||||||
28798066-A-T | 26651919-A-T | ** | ||||||
10879451-C-T | ** | |||||||
28819307-A-C | 26673160-A-C | ** | ||||||
11664021-C-A | ** | |||||||
10879414-A-T | ** | |||||||
10752461-A-C | ** | |||||||
10879415-C-CT | ** | |||||||
22354577-C-A | 20192691-C-A | DYZ19 | ** | |||||
5011293-TTCAGTAATAAAAAAATTA-T | 5143252-TTCAGTAATAAAAAAATTA-T | *** | ||||||
58979419-A-T | 56833272-A-T | *** | ||||||
6434921-TAAAAAAA-T | 6566880-TAAAAAAA-T | 20×A | *** | |||||
56830540-TGCTGAATTCCATTGCATTCC-CATTGAATTCCATTGTATTCC,T | *** | |||||||
56835846-TCCCACTCCATTCCAATCCGTG-T,TCCCACTCCATTCCAATCCATG | *** | |||||||
17118395-CTT-C,CTTT | 15006515-CTT-C,CTTT | 16×T | *** | |||||
6124534-G-A | 6256493-G-A | *** | ||||||
13869204-G-A | 11748498-G-A | *** | ||||||
56839680-T-G | *** | |||||||
14180886-C-A | 12060180-C-A | *** | ||||||
5612967-C-A | 5744926-C-A | *** | ||||||
16045738-C-A | 13933858-C-A | *** | ||||||
22286924-A-G | 20125038-A-G | DYZ19 | *** | |||||
11643711-A-G | *** | |||||||
18738659-C-A | 16626779-C-A | *** | ||||||
16616573-C-A | 14504693-C-A | *** | ||||||
10759383-C-T | FT429970 | *** | ||||||
13446664-C-A | 11290988-C-A | *** | ||||||
56832336-A-G | *** | |||||||
10980725-AT-A | *** | |||||||
28791734-T-C | 26645587-T-C | A12187 | *** | |||||
13253396-G-GTTTTTT | 11097720-G-GTTTTTT | 12×T | *** | |||||
56846785-G-T | *** | |||||||
21990510-C-A | 19828624-C-A | *** | ||||||
13446628-T-A | 11290952-T-A | *** | ||||||
13478305-C-A | 11322629-C-A | *** | ||||||
7009187-CTTT-C,CTT | 7141146-CTTT-C,CTT | 19×T | *** | |||||
21495317-C-A | 19333431-C-A | *** | ||||||
15406957-AA-A,AG | 13295077-AA-A,AG | *** | ||||||
10999892-T-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Age Analysis Information (work in progress)
All | McDonald | YFull | |
Kit: 206512 | 10062295 | 8198493 | 8050383 |
Used in age calculations | 10062295 | 8198493 | 8050383 |
Counts of SNPs | 2 | 1 |
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