Monro

BigY3: 519464, BigY2: 519464
MDKA Birth: Scotland

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > ZZ10 > Z253 > ZZ6 > FGC3249

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
519464		BigY2
519464
18368634-T-TTG 16256754-T-TTG P6_Prx 17×TGA*
20950918-G-GA 18789032-G-GA P4_Dst 9×AA*
58977072-C-T 56830925-C-T A*
13450757-A-T 11295081-A-T A*
20636996-C-T 18475110-C-T P4_Prx A*
21007175-G-A 18845289-G-A P4_Dst YA*
22631570-G-A 20469684-G-A Y++
22436631-G-T 20274745-G-T BY60300BY39226 DYZ19 **+
7736984-C-A 7868943-C-A Y132590 YY++
8229704-A-G 8361663-A-G Y132583 YY++
9067868-C-T 9230259-C-T Y132591 Y++
9954306-T-TA 10116697-T-TA 9×A*+
15484878-A-C 13372998-A-C Y132588 YY++
15590898-T-C 13479018-T-C Y132589 YY++
21730131-C-T 19568245-C-T Y132586 YY++
22263279-G-T 20101393-G-T FT275477 DYZ19 **+
22438935-G-C 20277049-G-C BY39227 DYZ19 **+
22678578-G-A 20516692-G-A Y132587 YY++
23031739-T-C 20869853-T-C Y132585 YY++
23070142-T-G 20908256-T-G F25757 YY++
5025163-T-C 5157122-T-C FT91005 +
5958927-T-C 6090886-T-C FT91087 +
13972834-T-G 11852128-T-G FT91176 Y+
15798229-G-A 13686349-G-A FT91229 YY+
21544251-A-C 19382365-A-C FT91327 Y+
28646341-T-A 26500194-T-A FT91377 +
15558495-TAGATAGAC-T,TAGATAGAT 13446615-TAGATAGAC-T,TAGATAGAT **
22225550-C-A 20063664-C-A DYZ19 *
28460874-C-A 26314727-C-A **
7299271-G-C 7431230-G-C Z843 CTS1264 **
19138405-AAT-A 17026525-AAT-A **
4103171-C-A 4235130-C-A **
6346082-TTATA-T 6478041-TTATA-T 21×TA**
58983478-G-T 56837331-G-T **
6133836-C-A 6265795-C-A **
19853773-G-A 17741893-G-A BY188773 P5_Prx **
10879410-C-T **
10816702-C-A **
19732412-C-A 17620532-C-A P5_Prx **
10980272-C-T FT439021 **
10980276-T-A **
10980302-C-G **
10980356-T-A **
10883115-C-A **
10980320-C-A **
10980322-T-A **
10980324-A-C **
10980329-A-C **
10980332-C-A **
10980337-A-C **
10980344-C-G **
10980354-A-C **
10980362-T-TCTG **
10980363-TCAA-T **
10980380-C-T **
10980384-C-G **
10756074-A-C **
10852749-C-T FT135198 **
19713162-G-T 17601282-G-T P5_Prx **
19547346-T-C 17435466-T-C **
19547368-G-C 17435488-G-C **
19547371-G-T 17435491-G-T **
4968249-C-A 5100208-C-A **
13461015-G-A 11305339-G-A **
19547326-C-T 17435446-C-T **
13943175-C-A 11822469-C-A **
10955555-C-A **
10799604-C-G **
10756119-T-C **
3535930-C-G 3667889-C-G FT364324 **
10678207-C-A **
27499382-C-A 25353235-C-A P1_Y2 **
10972009-A-T **
3620814-A-C 3752773-A-C **
20322184-T-TA 18160298-T-TA P5_Dst **
7390382-C-A 7522341-C-A **
6090981-C-A 6222940-C-A **
10956358-C-A **
10956368-C-T **
10956373-C-G **
10956398-CCA-C **
10787967-T-C **
10763276-CA-C **
10763280-C-CG **
4080794-A-C 4212753-A-C **
24613958-GT-G 22467811-GT-G P3_t2 **
15832216-CTTTTTTT-C 13720336-CTTTTTTT-C 22×T**
14926384-A-C 12814449-A-C **
10685790-T-G **
10879424-A-C **
15233959-C-A 13122045-C-A **
26376523-C-A 24230376-C-A P1_Y1 **
10965521-C-A **
14073187-CTTT-C 11952481-CTTT-C 27×T**
10975568-T-C **
7200611-C-T 7332570-C-T **
10782468-C-A FT430977 **
3535944-C-G 3667903-C-G **
16029242-C-A 13917362-C-A **
14727343-A-T 12615411-A-T **
10989116-GAAC-G **
4957875-G-T 5089834-G-T **
16645815-C-A 14533935-C-A **
10787272-C-A **
8907891-A-T 9039850-A-T **
17002729-T-G 14890849-T-G **
3602742-C-A 3734701-C-A **
10894011-C-A **
24614214-G-T 22468067-G-T P3_t2 **
15065997-C-A 12954089-C-A **
18347367-G-A 16235487-G-A P6_Prx **
6699013-C-A 6830972-C-A **
7081351-CA-C 7213310-CA-C 8×A**
10050169-C-A 10212560-C-A **
14989008-G-T 12877074-G-T **
24385347-G-T 22239200-G-T **
20250037-T-TA 18088151-T-TA P5_Dst **
10840207-C-A **
13874013-C-A 11753307-C-A **
10756024-T-C **
6298493-AC-A 6430452-AC-A IR3_Dst **
13936203-AGG-A 11815497-AGG-A **
10793286-C-A **
10793242-C-T FT431435 **
10766484-T-C **
17622727-A-C 15510847-A-C **
5189391-C-A 5321350-C-A **
19275244-A-C 17163364-A-C **
20848061-TG-T 18686175-TG-T P4_Dst **
10756111-C-A **
20094664-TG-T 17982784-TG-T P5_Dst **
17379904-A-T 15268024-A-T **
16181155-C-T 14069275-C-T **
10773398-A-C **
23832906-C-A 21671020-C-A **
19075090-C-A 16963210-C-A **
20347839-TG-T 18185953-TG-T P5_Dst **
17561576-C-A 15449696-C-A **
10787990-C-T **
10829284-T-A **
6807106-C-A 6939065-C-A **
10756064-T-C FT429819 **
16102016-G-TTT 13990136-G-TTT P8_Prx **
10812527-C-A **
10781526-C-A **
10829280-T-C **
14352595-C-T 12231890-C-T S15860 **
56858798-A-G **
19547334-G-A 17435454-G-A **
4900740-G-T 5032699-G-T **
10761015-T-C **
13196030-T-G 11040354-T-G **
20022465-T-G 17910585-T-G P5_Prx **
11009111-C-T **
14278766-G-T 12158060-G-T **
28720056-C-A 26573909-C-A **
19755995-T-G 17644115-T-G P5_Prx **
11005557-CA-C **
10830887-A-T **
27936761-AGT-A 25790614-AGT-A P1_Y2 **
10821699-G-T **
3478064-G-T 3610023-G-T **
11010002-C-A **
4778408-C-A 4910367-C-A FT113891 **
10776212-C-A **
17718407-C-A 15606527-C-A **
11011785-C-A **
2683419-A-C 2815378-A-C **
2688736-C-T 2820695-C-T **
2775220-A-T 2907179-A-T **
2775228-G-T 2907187-G-T **
2857425-G-T 2989384-G-T **
3110138-G-T 3242097-G-T **
3329107-A-T 3461066-A-T **
3535932-T-G 3667891-T-G **
3591096-G-A 3723055-G-A **
3602630-G-T 3734589-G-T **
3636687-G-T 3768646-G-T **
3681384-G-T 3813343-G-T **
3850251-G-T 3982210-G-T **
3877323-T-A 4009282-T-A **
3965747-A-C 4097706-A-C **
4103167-C-A 4235126-C-A **
4156636-T-G 4288595-T-G **
4156706-A-G 4288665-A-G **
4256908-A-T 4388867-A-T **
4445065-G-T 4577024-G-T **
4580451-A-C 4712410-A-C **
4626956-G-T 4758915-G-T **
4765280-G-T 4897239-G-T **
4788833-A-T 4920792-A-T **
4841379-A-C 4973338-A-C **
4926118-T-A 5058077-T-A **
4936524-A-T 5068483-A-T **
5031766-C-A 5163725-C-A **
5073345-C-A 5205304-C-A **
5096585-G-T 5228544-G-T **
5186563-T-A 5318522-T-A **
5200912-G-T 5332871-G-T **
5216543-T-G 5348502-T-G FT143227 **
5358581-T-A 5490540-T-A **
5434020-GTT-G 5565979-GTT-G 13×T**
5531026-C-T 5662985-C-T **
5587704-C-A 5719663-C-A **
5622670-T-G 5754629-T-G **
5708404-G-C 5840363-G-C **
5760390-C-A 5892349-C-A **
5817785-C-A 5949744-C-A **
5819854-C-A 5951813-C-A **
5887591-T-G 6019550-T-G **
5970164-G-T 6102123-G-T **
5990652-C-A 6122611-C-A **
6027799-C-A 6159758-C-A **
6279414-C-A 6411373-C-A IR3_Dst **
6279477-T-G 6411436-T-G IR3_Dst **
6308148-C-A 6440107-C-A IR3_Dst **
6310798-A-T 6442757-A-T IR3_Dst **
6402691-T-G 6534650-T-G **
6588269-G-GT 6720228-G-GT 10×T**
6626763-A-C 6758722-A-C **
6665460-C-A 6797419-C-A **
6757199-C-A 6889158-C-A **
6791053-G-A 6923012-G-A **
6984115-C-A 7116074-C-A **
7012525-A-C 7144484-A-C **
7012540-A-T 7144499-A-T **
7084416-C-A 7216375-C-A **
7117523-C-T 7249482-C-T **
7150649-T-A 7282608-T-A **
7180050-A-G 7312009-A-G **
7218238-C-A 7350197-C-A **
7303580-T-A 7435539-T-A **
7536337-CA-C 7668296-CA-C 28×A**
8276200-T-G 8408159-T-G **
8276208-T-G 8408167-T-G **
8854337-A-C 8986296-A-C **
9055404-C-A **
8981419-C-T 9143810-C-T **
9013158-T-A 9175549-T-A **
9141765-G-T 9304156-G-T **
9403053-C-A 9565444-C-A **
9444613-C-T 9607004-C-T **
9499553-A-T 9661944-A-T **
10083744-A-T 10246135-A-T **
10632684-A-T **
10653406-T-A **
10672086-A-C **
10677835-A-C **
10752337-T-A **
10756051-C-G **
10756056-GCA-G **
10756063-A-T **
10756093-A-T **
10756095-T-C **
10756130-T-A **
10760973-C-A **
10761004-A-T **
10761010-T-A **
10761020-C-G **
10761042-C-T **
10776132-C-G **
10783548-T-G **
10787137-C-A **
10787984-T-C **
10787989-T-A **
10789089-ACACTC-A **
10792461-CCATTACATTCCTTT-C **
10793015-T-C **
10796125-T-A **
10799623-T-G **
10799626-A-G **
10799641-A-C **
10800772-C-G **
10800777-C-T **
10802739-C-A **
10807687-C-A **
10808616-CA-C **
10809335-T-G **
10809365-T-G **
10813108-C-A **
10814658-C-A **
10816394-C-A **
10816684-C-T **
10816699-C-T **
10819620-T-C **
10821673-A-T **
10821688-A-T **
10821713-A-T **
10821718-A-T **
10828628-T-G **
10828637-A-T **
10828642-A-T **
10828647-A-T **
10830848-G-T **
10830857-G-T **
10840428-A-G **
10840473-T-A **
10840486-C-G **
10863535-C-A **
10872223-C-A **
10875406-C-A **
10877427-C-A **
10879385-T-A **
10879395-T-C **
10879405-T-A **
10879415-C-TG **
10879428-A-C **
10885846-T-A **
10888489-T-A **
10900308-G-T **
10932835-C-A **
10932840-C-A **
10961078-C-T FT206022 **
10961081-C-T **
10964105-T-A **
10968193-C-A **
10968547-C-A **
10979507-A-T **
10991305-G-T **
10995978-T-G **
11003500-C-A FT393301 **
11006401-T-A **
11009066-C-A **
11009105-A-G **
11009108-C-A **
11009120-A-T **
11010287-T-A **
11011825-C-A **
11015105-G-C **
11020158-T-A **
11020172-T-G **
11020999-C-A **
11025739-T-G **
11034341-C-A **
11035291-C-A **
13201813-A-T 11046137-A-T **
13258671-G-T 11102995-G-T **
13280680-T-G 11125004-T-G **
13565352-A-T 11409676-A-T **
13573180-A-T 11417504-A-T **
13596204-A-C 11440528-A-C **
13596274-A-C 11440598-A-C **
13623057-G-TT 11467381-G-TT **
13643930-A-T 11488254-A-T **
11646201-T-A **
11654943-G-T **
11672454-A-T **
11672458-G-T BY193002FT191150 **
11677294-A-C **
11677576-T-G **
13882801-A-C 11762095-A-C **
13884326-C-A 11763620-C-A **
13884360-C-A 11763654-C-A **
13908557-T-A 11787851-T-A **
13921042-G-A 11800336-G-A Y132584 ****
13956236-G-T 11835530-G-T **
13975441-G-T 11854735-G-T **
13987051-G-T 11866345-G-T **
14007555-C-A 11886849-C-A **
14041080-C-A 11920374-C-A **
14077086-T-C 11956380-T-C **
14284848-G-T 12164142-G-T **
14339086-C-A 12218381-C-A **
14448120-A-T 12327393-A-T **
14450381-C-A 12329654-C-A **
14483516-C-G 12362785-C-G **
14517668-C-A 12405869-C-A **
14524155-A-C 12412356-A-C **
14524165-C-A 12412366-C-A **
14554798-C-A 12442999-C-A **
14590560-A-G 12478760-A-G **
14736433-T-G 12624501-T-G **
14798308-G-T 12686379-G-T **
14926379-C-A 12814444-C-A **
15073377-T-A 12961467-T-A **
15221880-A-C 13109966-A-C FT153920 **
15280294-C-A 13168393-C-A **
15366323-C-T 13254443-C-T **
15653572-T-A 13541692-T-A **
15679821-T-G 13567941-T-G **
15680087-A-T 13568207-A-T **
15683008-C-A 13571128-C-A **
15758722-T-C 13646842-T-C **
15866052-C-A 13754172-C-A **
15943658-C-A 13831778-C-A **
16001518-G-T 13889638-G-T **
16062973-A-C 13951093-A-C **
16063799-A-T 13951919-A-T **
16522829-G-T 14410949-G-T **
16701690-G-T 14589810-G-T **
16829076-A-G 14717196-A-G **
17211545-A-T 15099665-A-T **
17217397-T-A 15105517-T-A **
17355648-C-A 15243768-C-A **
17963654-G-T 15851774-G-T **
18071619-A-C 15959739-A-C **
18080357-C-A 15968477-C-A **
18212485-A-T 16100605-A-T **
18321447-T-TG 16209567-T-TG P6_Prx **
18863739-G-T 16751859-G-T **
18930338-T-C 16818458-T-C **
18966196-C-A 16854316-C-A **
19127624-C-A 17015744-C-A **
19254348-C-A 17142468-C-A **
19297135-G-T 17185255-G-T **
19356296-C-A 17244416-C-A **
19547325-G-A 17435445-G-A **
19547353-C-T 17435473-C-T **
19547364-G-A 17435484-G-A **
19592183-C-A 17480303-C-A P5_Prx **
19592197-A-T 17480317-A-T P5_Prx **
19592198-A-T 17480318-A-T P5_Prx **
19592201-A-T 17480321-A-T P5_Prx **
19592216-C-A 17480336-C-A P5_Prx **
19592230-A-T 17480350-A-T P5_Prx **
19592235-A-T 17480355-A-T P5_Prx **
19592236-A-T 17480356-A-T P5_Prx **
19592251-G-T 17480371-G-T Z29938 P5_Prx **
19713178-C-T 17601298-C-T P5_Prx **
19713219-C-A 17601339-C-A P5_Prx **
19756091-C-A 17644211-C-A P5_Prx **
19765844-C-A 17653964-C-A P5_Prx **
19765848-C-A 17653968-C-A P5_Prx **
19765864-A-T 17653984-A-T P5_Prx **
19765873-G-T 17653993-G-T P5_Prx **
19884445-A-C 17772565-A-C P5_Prx **
19950189-TG-T 17838309-TG-T P5_Prx **
19950524-C-G 17838644-C-G P5_Prx **
19951383-A-T 17839503-A-T P5_Prx **
19951386-G-T 17839506-G-T P5_Prx **
19951397-G-T 17839517-G-T P5_Prx **
19951410-G-T 17839530-G-T P5_Prx **
19951416-G-T 17839536-G-T P5_Prx **
19951420-G-T 17839540-G-T P5_Prx **
19951421-G-T 17839541-G-T P5_Prx **
19951440-G-T 17839560-G-T P5_Prx **
20050941-G-T 17939061-G-T P5_Prx **
20347837-TG-T 18185951-TG-T P5_Dst **
20470074-C-A 18308188-C-A P5_Dst **
20470082-G-T 18308196-G-T P5_Dst **
20470092-C-A 18308206-C-A P5_Dst **
20470112-C-A 18308226-C-A P5_Dst **
20497541-T-G 18335655-T-G P5_Dst **
20497558-C-A 18335672-C-A P5_Dst **
20509984-C-A 18348098-C-A P5_Dst **
20509994-G-T 18348108-G-T P5_Dst **
21073118-C-G 18911232-C-G **
21115770-T-G 18953884-T-G **
21121308-T-G 18959422-T-G **
21153539-G-T 18991653-G-T **
21435274-C-A 19273388-C-A **
21438327-C-A 19276441-C-A **
21911067-T-G 19749181-T-G **
22013224-G-T 19851338-G-T **
22128903-C-A 19967017-C-A **
22314225-A-T 20152339-A-T DYZ19 **
22314244-A-T 20152358-A-T DYZ19 **
22314264-C-A 20152378-C-A DYZ19 **
22484007-G-T 20322121-G-T DYZ19 **
22518319-A-T 20356433-A-T **
22518331-A-T 20356445-A-T **
22564724-G-T 20402838-G-T **
22713412-C-A 20551526-C-A **
22767413-G-A 20605527-G-A FGC41010 **
22833740-T-A 20671854-T-A **
23050548-G-A 20888662-G-A **
23126310-T-A 20964424-T-A **
23185379-A-T 21023493-A-T **
23285495-A-T 21123609-A-T **
23440686-A-T 21278800-A-T **
23789605-C-A 21627719-C-A **
23837927-T-A 21676041-T-A **
23953110-A-T 21806963-A-T **
24248224-G-T 22102077-G-T P3_b1 **
24248226-G-T 22102079-G-T P3_b1 **
24248227-G-T 22102080-G-T P3_b1 **
24271493-A-C 22125346-A-C P3_b1 **
24271557-G-T 22125410-G-T P3_b1 **
24405060-T-G 22258913-T-G **
25173655-T-A 23027508-T-A g1 **
25956242-T-A 23810095-T-A P1_Y1 **
25959239-C-A 23813092-C-A P1_Y1 **
25959247-G-T 23813100-G-T P1_Y1 **
26188741-A-AG 24042594-A-AG P1_Y1 **
26376571-G-T 24230424-G-T P1_Y1 **
26376593-T-A 24230446-T-A P1_Y1 **
28481019-C-A 26334872-C-A **
28521714-A-C 26375567-A-C **
28697216-C-A 26551069-C-A **
28707539-C-T 26561392-C-T **
28818220-T-G 26672073-T-G **
28818234-A-T 26672087-A-T **
56841424-C-A **
3871486-G-A 4003445-G-A **
9340542-T-A 9502933-T-A **
2677637-T-C 2809596-T-C **
2679465-G-A 2811424-G-A **
3333308-T-C 3465267-T-C **
3651237-A-G 3783196-A-G **
4987343-G-A 5119302-G-A **
13398450-G-A 11242774-G-A **
13479623-C-T 11323947-C-T **
13482883-T-A 11327207-T-A **
14304397-T-C 12183691-T-C **
12374549-T-G **
12374552-C-T FT311805 **
12374559-C-A **
12374575-C-T **
12374576-A-G **
17522783-A-C 15410903-A-C **
18132265-A-G 16020385-A-G **
19138388-C-T 17026508-C-T **
21790193-T-G 19628307-T-G **
27216735-A-G 25070588-A-G P1_g3 **
8058468-G-T 8190427-G-T ***
10678169-T-C ***
17843091-ATTTT-A,ATTT 15731211-ATTTT-A,ATTT 18×T***
10935559-G-A,T ***
9832736-GA-G 9995127-GA-G 10×A***
10894056-C-A ***
19314709-ATTT-A,AT 17202829-ATTT-A,AT 17×T***
13473950-G-A 11318274-G-A ***
13473952-T-C 11318276-T-C ***
13473955-A-G 11318279-A-G ***
13473956-T-A 11318280-T-A ***
10785803-C-A ***
10785809-C-A ***
10935526-C-T ***
10787489-C-A ***
16505988-CTTTTT-C 14394108-CTTTTT-C 31×T***
15317506-T-A 13205612-T-A ***
13480368-T-A 11324692-T-A ***
16409013-CTTTTTT-C 14297133-CTTTTTT-C 18×T***
13898864-G-T 11778158-G-T ***
13453134-C-A 11297458-C-A ***
13453138-C-T 11297462-C-T ***
7991005-G-T 8122964-G-T ***
8273984-C-A 8405943-C-A ***
9076781-A-G 9239172-A-G ***
10658533-CA-C,CC ***
10668896-C-A ***
10764539-CATGCCAT-AAT,C ***
10924445-T-A ***
10935592-CA-T ***
13422823-G-T 11267147-G-T ***
15133387-C-A 13021474-C-A ***
15762063-G-T 13650183-G-T ***
17374821-G-T 15262941-G-T ***
17737857-G-T 15625977-G-T ***
19104610-C-A 16992730-C-A ***
21281470-C-A 19119584-C-A ***
56847347-G-T ***
19424063-G-T 17312183-G-T ***
15882659-T-G 13770779-T-G ***
17950880-C-A 15839000-C-A BY161355BY118672 ***
56861812-CAA-C,CA 26×A***
13936202-A-G 11815496-A-G FT98031 ***
4992690-C-T 5124649-C-T ***
7310571-CTT-C,CTTT 7442530-CTT-C,CTTT 21×T***
5400901-C-A 5532860-C-A ***
6784476-G-GAA 6916435-G-GAA 23×A***
13277795-G-A 11122119-G-A ***
13470049-T-A 11314373-T-A ***
13485807-A-G 11330131-A-G ***
12374580-T-A ***
15188770-A-G 13076856-A-G ***
15480214-T-C 13368334-T-C ***
16442029-A-G 14330149-A-G ***
16605632-G-A 14493752-G-A ***
19071526-T-C 16959646-T-C ***
19138363-A-ACATAC 17026483-A-ACATAC ***
19138394-A-G 17026514-A-G ***
19802673-C-A 17690793-C-A P5_Prx ***
21130592-A-G 18968706-A-G ***
22203908-T-A 20042022-T-A ***
22477185-C-T 20315299-C-T DYZ19 ***
22485753-G-A 20323867-G-A DYZ19 ***
22536372-A-G 20374486-A-G ***
23105647-T-C 20943761-T-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.