Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > CTS1751 > Z17966 > Z17969 > Z17967 > BY596 > BY595

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
781053
26031092-G-A 23884945-G-A P1_Y1 A*
19878411-C-T 17766531-C-T P5_Prx A*
23344286-T-G 21182400-T-G BY144708 YY+
9427202-T-C 9589593-T-C BY79364 YY+
24411854-C-T 22265707-C-T BY149674 Y+
18751318-C-T 16639438-C-T BY123629 YY+
17272691-A-T 15160811-A-T BY113379 YY+
27535215-A-G 25389068-A-G P1_Y2 +
8186048-C-T 8318007-C-T BY70535 YY+
21219091-C-T 19057205-C-T BY131199 YY+
17977577-G-T 15865697-G-T BY43497 Y+
15111071-T-A 12999158-T-A **
14910959-A-C 12799026-A-C **
15084714-G-C 12972804-G-C **
15051248-C-A 12939339-C-A **
14932092-TTTTG-T 12820157-TTTTG-T **
36912-C-A **
14825982-C-T 12714049-C-T **
14857114-C-A 12745180-C-A **
14852993-C-A 12741059-C-A **
14851275-G-T 12739341-G-T **
15192821-C-A 13080907-C-A **
14825971-A-G 12714038-A-G **
14825970-C-T 12714037-C-T **
14825963-T-C 12714030-T-C **
14622058-C-G 12510256-C-G **
14597903-C-A 12486103-C-A **
14588805-G-T 12477005-G-T **
15151500-C-A 13039587-C-A **
15391386-C-A 13279506-C-A **
15199146-G-T 13087232-G-T **
15822559-T-G 13710679-T-G **
16414330-C-A 14302450-C-A **
16369029-A-G 14257149-A-G **
16275343-C-A 14163463-C-A **
16141945-C-A 14030065-C-A P8_Dst **
16134274-G-A 14022394-G-A **
16053382-A-T 13941502-A-T **
15956575-C-A 13844695-C-A **
15940088-A-G 13828208-A-G **
15903903-G-C 13792023-G-C **
15815394-T-G 13703514-T-G **
15252329-C-A 13140415-C-A **
15659859-G-A 13547979-G-A **
15647986-A-G 13536106-A-G **
15616089-C-A 13504209-C-A **
15615773-G-T 13503893-G-T **
15587766-A-G 13475886-A-G **
15579325-C-A 13467445-C-A **
15569696-C-A 13457816-C-A **
15471192-T-A 13359312-T-A 9×A**
15351166-C-A 13239285-C-A **
14588754-G-T 12476954-G-T **
14423359-C-A 12302634-C-A **
14572512-A-C 12460712-A-C **
11008667-T-C **
13545385-A-C 11389709-A-C **
13476081-C-A 11320405-C-A **
13468991-C-A 11313315-C-A **
13325848-T-G 11170172-T-G **
13287309-G-T 11131633-G-T **
13276865-C-A 11121189-C-A **
13222071-G-T 11066395-G-T **
11033333-C-A **
11017631-T-G **
11001804-G-A **
13644046-C-A 11488370-C-A **
10992944-C-G **
10987810-ATTC-A **
10974249-A-C **
10972115-G-T **
10967738-C-A **
10965299-C-A **
10955316-C-A **
10951644-C-A **
10944891-C-A **
13595246-C-A 11439570-C-A **
13697671-T-A 11541995-T-A **
14548622-G-C 12436823-G-C **
14194728-C-A 12074022-C-A **
14464402-C-T 12343675-C-T **
16577534-C-A 14465654-C-A **
14414707-A-G 12294004-A-G **
14413210-C-CAAAAA 12292507-C-CAAAAA 23×A**
14384287-G-T 12263583-G-T **
14295135-A-T 12174429-A-T **
14245115-T-C 12124409-T-C **
14245110-T-G 12124404-T-G **
14224126-T-C 12103420-T-C Y90703 **
14141963-C-A 12021257-C-A **
13697672-C-A 11541996-C-A **
14008926-C-A 11888220-C-A **
13899486-C-A 11778780-C-A **
13899471-G-C 11778765-G-C **
13880701-C-T 11759995-C-T **
13828377-G-C 11707671-G-C **
11662472-A-T **
11659531-G-A **
2948434-T-C 3080393-T-C Y170 **
13697676-T-A 11542000-T-A **
16540358-G-T 14428478-G-T **
17095967-A-G 14984087-A-G **
16775526-C-G 14663646-C-G **
21880921-T-C 19719035-T-C **
22502916-G-C 20341030-G-C DYZ19 **
22268514-C-T 20106628-C-T DYZ19 **
22146351-C-A 19984465-C-A **
21954383-C-A 19792497-C-A **
21952108-C-A 19790222-C-A **
21926094-C-A 19764208-C-A **
21889427-T-C 19727541-T-C **
21880924-C-A 19719038-C-A **
21822370-G-A 19660484-G-A **
22580075-T-TG 20418189-T-TG **
21799223-C-A 19637337-C-A **
21681803-C-A 19519917-C-A **
21654859-G-T 19492973-G-T **
21602617-C-A 19440731-C-A **
21591385-C-A 19429499-C-A **
21456238-A-G 19294352-A-G **
21443616-C-A 19281730-C-A **
21425327-G-T 19263441-G-T **
21296551-C-T 19134665-C-T **
22579484-C-A 20417598-C-A **
22580079-T-TG 20418193-T-TG **
21043105-C-A 18881219-C-A **
23802191-C-A 21640305-C-A **
56842128-C-G **
56838737-G-T **
28635448-A-C 26489301-A-C **
28608695-T-C 26462548-T-C **
26386200-A-C 24240053-A-C P1_Y1 **
26133152-G-T 23987005-G-T P1_Y1 **
24878217-G-T 22732070-G-T g1 **
24872697-G-GTT 22726550-G-GTT P3_b2 11×T**
23802282-C-T 21640396-C-T **
23787086-A-G 21625200-A-G **
22722522-A-AT 20560636-A-AT **
23779268-G-T 21617382-G-T **
23510489-C-A 21348603-C-A **
23386754-C-A 21224868-C-A **
23298703-C-A 21136817-C-A Y111217 **
23187652-C-A 21025766-C-A **
22820290-G-T 20658404-G-T **
22820240-A-T 20658354-A-T **
22812140-C-A 20650254-C-A **
22793404-C-A 20631518-C-A **
21188020-C-A 19026134-C-A **
20825737-T-G 18663851-T-G P4_Gap **
16835704-C-A 14723824-C-A **
17372403-G-T 15260523-G-T **
17860728-G-T 15748848-G-T **
17860711-G-T 15748831-G-T **
17808256-C-T 15696376-C-T **
17695725-C-A 15583845-C-A **
17591937-T-C 15480057-T-C **
17555789-T-A 15443909-T-A **
17534660-A-C 15422780-A-C **
17528915-C-A 15417035-C-A **
17367911-G-T 15256031-G-T **
17952799-T-G 15840919-T-G **
17343835-C-A 15231955-C-A **
17318763-C-A 15206883-C-A **
17292699-T-G 15180819-T-G **
17128067-G-T 15016187-G-T **
17095981-C-T 14984101-C-T **
10942220-G-T **
17095966-A-T 14984086-A-T **
17078799-C-A 14966919-C-A **
16964097-A-C 14852217-A-C **
17885701-A-G 15773821-A-G **
18040411-C-G 15928531-C-G **
20501842-G-A 18339956-G-A P5_Dst **
19077245-C-A 16965365-C-A **
19720709-ATTTTTT-A 17608829-ATTTTTT-A P5_Prx 23×T**
19517937-G-C 17406057-G-C **
19517912-T-G 17406032-T-G **
19465043-C-A 17353163-C-A **
19406288-A-G 17294408-A-G **
19395554-C-A 17283674-C-A **
19268165-C-A 17156285-C-A **
19268048-C-A 17156168-C-A **
19081119-C-A 16969239-C-A **
18993503-C-A 16881623-C-A **
18192636-C-A 16080756-C-A **
18992577-T-C 16880697-T-C **
18929829-C-A 16817949-C-A **
18904382-A-T 16792502-A-T **
18868539-T-A 16756659-T-A **
18792800-C-A 16680920-C-A **
18619048-A-G 16507168-A-G **
18606165-C-A 16494285-C-A **
18381649-C-A 16269769-C-A P6_Gap **
18197783-G-A 16085903-G-A Y101605 **
10944879-T-A **
11648588-C-T **
10939412-C-A **
3705821-C-A 3837780-C-A **
4256992-T-A 4388951-T-A **
13697670-T-A 11541994-T-A **
4256986-T-A 4388945-T-A **
10943605-C-A **
4063857-C-A 4195816-C-A **
10831575-C-T **
3732470-C-A 3864429-C-A **
3249946-C-A 3381905-C-A **
4472982-C-A 4604941-C-A **
3164562-T-G 3296521-T-G **
2948155-A-C 3080114-A-C **
10831576-C-T **
10938661-G-A **
2854967-T-G 2986926-T-G **
10831585-C-CAAGAG **
2686563-A-G 2818522-A-G **
2686560-T-C 2818519-T-C **
4433565-C-T 4565524-C-T **
4604403-G-T 4736362-G-T **
2686542-G-C 2818501-G-C **
10661713-C-A **
7102275-G-T 7234234-G-T **
10934765-A-T **
7075011-C-A 7206970-C-A **
7054113-A-T 7186072-A-T **
10689458-G-T **
24614249-C-A 22468102-C-A P3_t2 **
6847838-C-A 6979797-C-A **
6776469-C-A 6908428-C-A **
10069975-C-A 10232366-C-A **
6673817-GA-G 6805776-GA-G **
6647962-C-A 6779921-C-A **
6303631-T-G 6435590-T-G IR3_Dst **
7190686-AAAT-A 7322645-AAAT-A 5×AAT**
5359548-G-T 5491507-G-T **
5212528-C-A 5344487-C-A **
4700911-C-A 4832870-C-A **
9047943-C-A 9210334-C-A **
10831592-A-C **
2685701-G-A 2817660-G-A **
7146301-CAAAAAAA-C 7278260-CAAAAAAA-C 17×A**
10847601-C-A **
10655228-C-A **
9773689-C-A 9936080-C-A **
14622062-C-A 12510260-C-A **
10938639-G-T **
10691316-C-A **
15986680-C-A 13874800-C-A **
17275741-G-GA 15163861-G-GA 9×A**
13928459-C-A 11807753-C-A **
10751188-C-T **
20439104-A-AC 18277218-A-AC P5_Dst **
18412877-G-GA 16300997-G-GA P6_Gap 9×A**
22792568-C-A 20630682-C-A **
6772183-C-A 6904142-C-A **
14825986-T-C 12714053-T-C **
14825976-T-C 12714043-T-C **
14825973-G-C 12714040-G-C **
7142253-C-A 7274212-C-A **
6953379-C-A 7085338-C-A **
10751195-A-G **
8673321-C-A 8805280-C-A **
10781456-G-T **
10744658-C-A **
13871486-C-G 11750780-C-G **
9109338-G-T **
10894628-C-A **
21960454-C-A 19798568-C-A **
10938691-A-C **
15425220-C-A 13313340-C-A **
18826644-C-A 16714764-C-A **
10870644-T-A **
23802288-G-T 21640402-G-T **
21880917-G-A 19719031-G-A F24792 **
3834722-C-A 3966681-C-A **
8810778-C-A 8942737-C-A **
21703180-C-A 19541294-C-A **
2685710-C-T 2817669-C-T **
5434020-G-GT 5565979-G-GT 13×T**
10870648-A-G **
7131791-G-T 7263750-G-T **
14768370-C-A 12656439-C-A **
7163088-T-A 7295047-T-A **
10751182-T-A **
15364059-CAAAAAAA-C 13252179-CAAAAAAA-C 21×A**
10013914-A-T 10176305-A-T **
9953356-TG-T 10115747-TG-T **
9927550-C-A 10089941-C-A **
10973007-C-T **
9847372-C-T 10009763-C-T **
14494637-C-A 12382834-C-A **
18244625-C-A 16132745-C-A **
9700165-G-T 9862556-G-T IR3_Prx **
10655209-C-A **
9465157-T-C 9627548-T-C **
9426174-C-A 9588565-C-A **
15411163-C-A 13299283-C-A **
20637572-G-GAGAT 18475686-G-GAGAT P4_Prx **
17951694-C-A 15839814-C-A **
8997202-A-C 9159593-A-C **
9109293-C-A **
8844847-G-T 8976806-G-T **
17924804-C-A 15812924-C-A Y21280 FGC46746 **
10766284-C-A **
8817230-C-A 8949189-C-A **
10865547-C-T **
10938651-T-C **
10938636-T-A **
10925986-C-T **
10877463-C-A **
10877441-T-G **
10870621-C-G **
10870599-AT-A **
10870597-T-A **
10865533-A-G **
10789779-C-T **
10865521-C-T **
10865501-C-A **
10846907-C-A **
10838513-C-A **
10836723-C-A **
10818699-T-C **
10791991-T-C **
19517872-A-C 17405992-A-C CTS10531 PF1995 V4211 Z837 **
8835399-G-A 8967358-G-A **
3275331-G-T 3407290-G-T **
10831603-C-G **
7261171-T-C 7393130-T-C **
10693816-C-A **
14992885-C-T 12880970-C-T **
7987723-TA-T 8119682-TA-T **
10865564-A-C **
7756187-C-A 7888146-C-A **
7375234-G-T 7507193-G-T **
11674832-C-A **
7248673-C-A 7380632-C-A **
10851172-G-T **
10617757-C-A **
4470059-C-A 4602018-C-A **
7223469-A-AT 7355428-A-AT **
7223461-A-AT 7355420-A-AT **
10865505-A-T **
7201832-C-A 7333791-C-A **
7170856-G-C 7302815-G-C **
10992965-A-T **
10752484-C-A **
8151144-C-A 8283103-C-A **
8658716-C-A 8790675-C-A **
8269941-A-C 8401900-A-C **
10973611-C-A **
8341718-CA-C 8473677-CA-C **
8408468-C-A 8540427-C-A **
23463283-G-A 21301397-G-A M5564 PF1904 ***
23431062-C-A 21269176-C-A ***
21168598-G-T 19006712-G-T ***
14220120-C-A 12099414-C-A Z10555 ***
22688789-C-A 20526903-C-A ***
14825205-C-A 12713272-C-A ***
23471038-CAA-C,CAAA 21309152-CAA-C,CAAA 19×A***
22213780-T-C 20051894-T-C ***
17634216-C-A 15522336-C-A ***
22801931-C-A 20640045-C-A ***
22580541-C-A 20418655-C-A ***
23480133-C-A 21318247-C-A ***
24429510-C-A 22283363-C-A ***
22174346-C-A 20012460-C-A ***
22190349-C-A 20028463-C-A ***
24434578-C-A 22288431-C-A ***
21985425-A-T 19823539-A-T ***
21518053-C-T 19356167-C-T ***
23205239-C-A 21043353-C-A ***
22065899-G-GTTT 19904013-G-GTTT 12×T***
22096010-C-A 19934124-C-A ***
28441789-C-A 26295642-C-A P1_gr2 ***
22066121-C-A 19904235-C-A ***
21950589-A-T 19788703-A-T ***
28559245-G-A 26413098-G-A ***
22869522-CAT-C 20707636-CAT-C ***
22949472-G-GTT 20787586-G-GTT 10×T***
24434574-A-G 22288427-A-G ***
21617225-C-A 19455339-C-A ***
21623431-G-GT 19461545-G-GT 8×T***
21213161-C-T 19051275-C-T ***
22096809-C-A 19934923-C-A ***
17186726-TAAAAA-T,TAAAA 15074846-TAAAAA-T,TAAAA 19×A***
19800133-T-C 17688253-T-C P5_Prx ***
14768271-C-A 12656340-C-A ***
8665879-C-A 8797838-C-A ***
14540427-C-A 12428628-C-A ***
14566770-CAAA-C 12454970-CAAA-C 13×A***
8273590-C-T 8405549-C-T ***
8268025-A-G 8399984-A-G ***
14630214-C-A 12518283-C-A ***
14775639-C-A 12663708-C-A ***
9029777-C-A 9192168-C-A ***
8054370-C-A 8186329-C-A ***
8042481-C-A 8174440-C-A ***
7977713-C-A 8109672-C-A ***
7294348-C-A 7426307-C-A ***
14934633-C-CT 12822698-C-CT 9×T***
14972667-C-A 12860742-C-A ***
15105387-C-A 12993475-C-A ***
8708295-C-A 8840254-C-A ***
9037175-T-G 9199566-T-G ***
7084598-T-A 7216557-T-A ***
13643199-A-G 11487523-A-G ***
10988615-C-T ***
10988742-T-C ***
13294019-A-G 11138343-A-G ***
10682667-G-T ***
13486805-C-A 11331129-C-A ***
13556594-C-A 11400918-C-A ***
10029957-C-A 10192348-C-A ***
9859696-G-T 10022087-G-T ***
9396541-C-A 9558932-C-A ***
11650397-G-A ***
9826862-C-A 9989253-C-A ***
9822258-G-A 9984649-G-A ***
13810153-C-A 11689447-C-A ***
9737396-G-T 9899787-G-T IR3_Prx ***
9503330-C-A 9665721-C-A ***
14027016-G-T 11906310-G-T ***
7136375-A-G 7268334-A-G ***
15510636-C-A 13398756-C-A ***
19373046-G-T 17261166-G-T ***
19283146-C-A 17171266-C-A ***
2762336-T-C 2894295-T-C ***
17356715-C-A 15244835-C-A ***
17389779-C-A 15277899-C-A ***
17473835-T-C 15361955-T-C ***
2684838-C-A 2816797-C-A ***
11022680-C-A ***
17926954-AT-A 15815074-AT-A 9×T***
17962318-A-G 15850438-A-G ***
17020985-C-A 14909105-C-A ***
9029736-CT-C,CTT 9192127-CT-C,CTT 16×T***
18235626-G-A 16123746-G-A ***
18539319-G-T 16427439-G-T ***
18868657-C-A 16756777-C-A ***
18898012-C-A 16786132-C-A ***
19020301-C-A 16908421-C-A ***
19103888-TTTTTTG-T 16992008-TTTTTTG-T ***
17175186-G-T 15063306-G-T ***
16862405-G-T 14750525-G-T ***
15580361-C-A 13468481-C-A ***
5242502-GTA-G,GTATA 5374461-GTA-G,GTATA ***
6953601-C-A 7085560-C-A ***
6875273-C-A 7007232-C-A ***
6795841-C-A 6927800-C-A ***
15665871-C-A 13553991-C-A ***
15735148-C-A 13623268-C-A ***
15786234-A-T 13674354-A-T ***
6012812-C-A 6144771-C-A ***
16091682-C-A 13979802-C-A ***
4069693-C-A 4201652-C-A ***
5084485-C-A 5216444-C-A ***
16288185-A-ATT 14176305-A-ATT 16×T***
16308644-C-T 14196764-C-T ***
16364633-T-C 14252753-T-C ***
16373770-A-G 14261890-A-G ***
16623789-G-T 14511909-G-T ***
16778144-C-A 14666264-C-A ***
18234552-G-GA 16122672-G-GA 10×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 781053853044170021656954256
Used in age calculations853044170021656954256
Counts of SNPs77
Variant counts last updated 2018-06-18 20:56:30.



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