Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > Z253 > ZZ6 > FGC3249

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
155090
13451256-C-A 11295580-C-A A*
28817473-G-A 26671326-G-A A*
25971024-A-G 23824877-A-G P1_Y1 A*
28790554-T-A 26644407-T-A A*
26095311-A-G 23949164-A-G P1_Y1 A*
24281777-A-G 22135630-A-G P3_t1 A*
20047817-A-C 17935937-A-C P5_Prx A*
19596110-C-A 17484230-C-A P5_Prx YA*
19882937-A-G 17771057-A-G P5_Prx A*
18319305-C-T 16207425-C-T P6_Prx A*
24257779-T-C 22111632-T-C P3_b1 A*
22450695-G-A 20288809-G-A BY907 DYZ19 A*
6255916-T-G 6387875-T-G IR3_Dst A*
22232518-T-A 20070632-T-A ZS5688 DYZ19 A*
28790540-G-T 26644393-G-T A*
26383340-CTT-C 24237193-CTT-C P1_Y1 16×T+
21513252-T-C 19351366-T-C Y56821 BY31071 YY*
22041924-A-G 19880038-A-G Y57552 BY31073 YY*
21384338-A-G 19222452-A-G BY31070 Y56599 YY*
21781994-G-A 19620108-G-A ZS5898 YY*
21319522-G-A 19157636-G-A BY31069 Y56529 YY*
18126204-C-T 16014324-C-T BY31068 Y54287 YY*
18065479-G-T 15953599-G-T BY31067 Y54159 YY*
7262485-G-A 7394444-G-A YY*
17909188-C-T 15797308-C-T Y53907 BY31066 YY*
17344256-T-A 15232376-T-A Y53122 YY*
21660382-C-T 19498496-C-T BY31072 Y57033 YY*
23314671-G-C 21152785-G-C Y59024 BY31078 YY*
7312257-G-A 7444216-G-A YY*
20662910-G-A 18501024-G-A P4_Prx *
21456432-A-C 19294546-A-C YY*
21477340-G-A 19315454-G-A YY*
9005440-C-T 9167831-C-T Y*
16092302-C-CT 13980422-C-CT *
21723912-G-C 19562026-G-C YY*
15029917-G-A 12918005-G-A YY*
22275245-G-A 20113359-G-A DYZ19 *
23589271-A-G 21427385-A-G YY*
22294121-G-T 20132235-G-T DYZ19 *
22887231-T-A 20725345-T-A YY*
21432047-A-AT 19270161-A-AT 11×T*
17657694-A-AT 15545814-A-AT *
14063962-T-C 11943256-T-C BY31063 Y48935 YY*
22469603-G-A 20307717-G-A BY31076 DYZ19 *
22215764-C-T 20053878-C-T Y57785 BY31075 Y*
16732676-C-A 14620796-C-A BY31065 Y52257 YY*
15569750-T-C 13457870-T-C BY31064 YY*
9382832-C-A 9545223-C-A BY31062 Y*
13693423-C-T 11537747-C-T Z32165 *
28781762-C-T 26635615-C-T BY907CTS13028 S1322 AM00498 *
23237563-C-A 21075677-C-A BY907S1319 AM00497 Y*
17651684-A-C 15539804-A-C BY907CTS7768 S1307 AM00495 YY*
9054596-T-G 9216987-T-G Y48141 BY31061 Y*
16851387-C-A 14739507-C-A FGC14126FGC14126 YY*
13705270-C-G 11549594-C-G BY907BY31055 *
9517934-G-C 9680325-G-C BY907Z29697 BY907 *
14294565-C-A 12173859-C-A YY*
8596434-C-G 8728393-C-G BY907S11695 SK2120 YY*
22440376-G-A 20278490-G-A Z272Z272 DYZ19 *
22293941-C-G 20132055-C-G Z272S229 Z274 DYZ19 *
17971111-T-A 15859231-T-A YY*
8444479-G-A 8576438-G-A A1063A1065 YY*
21033703-CAT-C 18871817-CAT-C Z195/S355S355 Z196 *
17922066-G-A 15810186-G-A Z195/S355Z195 S227 YY*
22287905-G-T 20126019-G-T DYZ19 *
17650871-C-A 15538991-C-A BY907S1306 AM00494 YY*
21411036-A-G 19249150-A-G YY*
14535908-C-G 12424109-C-G YY*
22484451-G-C 20322565-G-C Z5745 DYZ19 *
8505605-G-A 8637564-G-A Y47448 YY*
23873804-C-G 21711918-C-G Y*
21263142-AAAC-A 19101256-AAAC-A 5×AAC*
13707530-A-G 11551854-A-G BY31056 *
17198266-A-G 15086386-A-G YY*
6225531-A-C 6357490-A-C IR3_Dst *
6875843-C-T 7007802-C-T YY*
17584458-C-A 15472578-C-A YY*
10914438-CT-C **
10906626-A-G **
10914430-A-G **
10785255-T-G **
10914419-T-A **
10914455-A-T **
10770572-C-G **
10914450-A-C **
10770598-C-T **
10825286-A-AATTAC **
10814333-C-A **
10789351-A-AGTTGGTGCAAATACT **
10791306-C-T **
10800395-C-A **
10878518-C-A **
10793405-G-T **
10848851-C-A **
10835587-C-G **
10791333-T-C **
10830858-G-A **
10791315-C-CCTTTA **
10899987-ATTCGT-A **
56879671-A-C **
10914457-C-T **
10769654-C-T **
13696829-G-T 11541153-G-T **
13642462-A-G 11486786-A-G **
13623528-C-A 11467852-C-A **
13596361-C-A 11440685-C-A **
13540242-G-T 11384566-G-T **
13540218-G-T 11384542-G-T **
13512571-T-C 11356895-T-C **
13484756-A-T 11329080-A-T **
13461405-G-T 11305729-G-T **
13460421-A-T 11304745-A-T **
13321583-G-T 11165907-G-T **
13255766-C-A 11100090-C-A **
13253526-T-A 11097850-T-A **
11031637-G-T **
10927213-A-G **
11015577-C-T **
11007242-T-A **
11006483-C-G **
11006479-C-A **
10995512-C-A **
10992332-T-TTTCATTC **
10989982-A-C **
10973498-T-C **
10964784-TTCCACTCCAC-T **
10959860-C-A **
10959769-C-A **
10957948-T-A **
10934003-C-A **
10770545-A-G **
9082341-C-T 9244732-C-T Y48164 **
10760437-C-T **
7228443-T-G 7360402-T-G **
8856908-CT-C 8988867-CT-C **
8741609-G-T 8873568-G-T **
8171953-C-A 8303912-C-A **
8109954-T-C 8241913-T-C **
8109949-C-T 8241908-C-T **
8080133-G-T 8212092-G-T **
7868816-A-G 8000775-A-G **
7768718-A-T 7900677-A-T **
7434927-C-G 7566886-C-G **
7339753-T-G 7471712-T-G **
7339744-C-A 7471703-C-A **
7332993-C-T 7464952-C-T **
7228440-G-A 7360399-G-A **
9063107-T-G 9225498-T-G **
7160646-G-A 7292605-G-A **
7143436-T-G 7275395-T-G **
7088541-C-A 7220500-C-A **
6978437-G-T 7110396-G-T **
6028902-T-G 6160861-T-G **
5869982-C-TA 6001941-C-TA 11×T**
5867291-T-G 5999250-T-G **
5780064-G-T 5912023-G-T **
5761111-C-A 5893070-C-A **
5258701-A-G 5390660-A-G **
4959856-C-A 5091815-C-A **
4946615-G-T 5078574-G-T **
4908252-C-A 5040211-C-A **
9014305-C-G 9176696-C-G **
13921089-T-C 11800383-T-C **
10760435-T-G **
10668968-A-C **
10746661-TC-T **
10746640-T-C **
10746627-CTATTA-C **
10746621-T-C **
10685844-T-A **
10685836-A-C **
10685832-C-T **
10685822-CA-C **
10685816-C-CCT **
10685811-CCA-C **
10685801-C-A **
10677385-G-T **
10672313-G-T **
10663396-TTTCCA-T **
9191036-C-G 9353427-C-G **
10661024-C-A **
10653850-G-A **
10035996-G-T 10198387-G-T **
9978082-T-G 10140473-T-G **
9975225-T-G 10137616-T-G **
9961355-A-C 10123746-A-C **
9508531-CTTTTT-C 9670922-CTTTTT-C 25×T**
9465132-G-T 9627523-G-T **
9442396-G-T 9604787-G-T **
9211549-C-A 9373940-C-A **
9191076-A-T 9353467-A-T 20×AC**
9191068-C-A 9353459-C-A **
9191050-A-T 9353441-A-T **
13856656-C-G 11735950-C-G **
15605802-C-A 13493922-C-A **
14032478-C-A 11911772-C-A **
21023198-C-T 18861312-C-T P4_Dst **
21545392-C-A 19383506-C-A **
21515767-G-C 19353881-G-C **
21515699-A-G 19353813-A-G **
21468277-A-G 19306391-A-G **
21427653-C-A 19265767-C-A **
21383413-C-A 19221527-C-A Y106299 **
21306643-G-T 19144757-G-T **
21092217-A-C 18930331-A-C **
21023235-G-T 18861349-G-T P4_Dst 8×T**
21023230-C-A 18861344-C-A P4_Dst **
21023226-C-A 18861340-C-A P4_Dst **
21023223-A-T 18861337-A-T P4_Dst **
20815483-A-T 18653597-A-T P4_Gap **
21827823-C-T 19665937-C-T Y107621 **
20252821-G-GC 18090935-G-GC P5_Dst **
20028089-C-A 17916209-C-A P5_Prx **
19867106-T-A 17755226-T-A P5_Prx **
19775271-A-T 17663391-A-T P5_Prx **
19583703-A-C 17471823-A-C P5_Prx **
19583695-G-T 17471815-G-T P5_Prx **
19583685-A-T 17471805-A-T P5_Prx **
19583657-C-A 17471777-C-A P5_Prx **
19558808-T-C 17446928-T-C **
19554430-T-C 17442550-T-C **
19439640-T-A 17327760-T-A **
19436809-A-T 17324929-A-T **
19436756-G-T 17324876-G-T **
21614715-G-T 19452829-G-T **
21909425-T-C 19747539-T-C **
19331734-C-A 17219854-C-A **
26247368-C-T 24101221-C-T P1_Y1 **
56851562-C-T **
56849095-G-A **
58984829-C-A 56838682-C-A **
28818371-G-T 26672224-G-T **
28800794-G-T 26654647-G-T **
28653819-C-A 26507672-C-A **
28560166-T-G 26414019-T-G **
28492022-G-A 26345875-G-A **
28006524-C-A 25860377-C-A P1_Y2 **
27595930-T-C 25449783-T-C P1_Y2 **
26415613-C-T 24269466-C-T P1_Y1 **
26355372-C-A 24209225-C-A P1_Y1 **
24276862-A-C 22130715-A-C P3_b1 **
22149927-A-C 19988041-A-C **
24276858-A-C 22130711-A-C P3_b1 **
24276778-A-C 22130631-A-C P3_b1 **
24267228-C-CAA 22121081-C-CAA P3_b1 **
23881906-G-A 21720020-G-A **
23856983-A-G 21695097-A-G **
23802273-C-G 21640387-C-G **
23516456-G-T 21354570-G-T **
23512177-G-T 21350291-G-T **
23414142-T-G 21252256-T-G **
23294135-C-A 21132249-C-A **
23167764-C-A 21005878-C-A **
23006927-T-C 20845041-T-C **
22991191-CA-C 20829305-CA-C **
19377202-AAG-A 17265322-AAG-A **
19126413-A-T 17014533-A-T **
14060650-G-T 11939944-G-T **
14566448-A-G 12454648-A-G **
15302648-C-A 13190747-C-A **
15258408-A-G 13146492-A-G **
15077938-C-A 12966028-C-A **
15034901-A-C 12922989-A-C **
14949170-G-C 12837244-G-C **
14846874-G-T 12734940-G-T **
14798792-C-A 12686863-C-A **
14777056-C-T 12665125-C-T **
14566474-T-A 12454674-T-A **
14566466-C-T 12454666-C-T **
14566465-C-T 12454665-C-T **
14566459-A-G 12454659-A-G **
14566436-A-G 12454636-A-G **
15393892-A-C 13282012-A-C **
14566412-C-G 12454612-C-G **
14557897-C-A 12446098-C-A **
14551650-C-A 12439851-C-A **
14520785-G-T 12408986-G-T **
14449381-G-A 12328654-G-A **
14424119-T-G 12303394-T-G **
14281017-A-C 12160311-A-C **
14158227-G-A 12037521-G-A **
14158220-C-T 12037514-C-T **
14098731-T-A 11978025-T-A **
14080016-A-C 11959310-A-C **
14071549-C-CGT 11950843-C-CGT **
14065538-G-A 11944832-G-A **
15368734-C-A 13256854-C-A **
15428316-A-T 13316436-A-T **
19126406-A-C 17014526-A-C **
17367546-T-A 15255666-T-A **
19121863-C-A 17009983-C-A **
19077209-T-A 16965329-T-A **
18901271-A-C 16789391-A-C **
18753541-C-A 16641661-C-A **
18692685-C-A 16580805-C-A **
18530998-C-A 16419118-C-A P6_Dst **
18430055-A-C 16318175-A-C P6_Dst **
18397926-A-G 16286046-A-G P6_Gap **
18365679-T-C 16253799-T-C P6_Prx **
18106733-C-A 15994853-C-A **
17953952-G-A 15842072-G-A **
17683096-T-C 15571216-T-C **
17425221-C-A 15313341-C-A **
17362795-C-A 15250915-C-A **
15576877-T-C 13464997-T-C **
17283130-C-G 15171250-C-G **
17153608-G-T 15041728-G-T **
16988798-C-A 14876918-C-A **
16623504-G-T 14511624-G-T **
16302535-C-A 14190655-C-A **
16298615-AC-A 14186735-AC-A **
16276177-T-G 14164297-T-G **
16101994-G-T 13990114-G-T P8_Prx **
16101986-G-T 13990106-G-T P8_Prx **
15943018-A-C 13831138-A-C **
15801672-A-C 13689792-A-C **
15786628-T-C 13674748-T-C **
4498320-G-T 4630279-G-T **
4871848-T-G 5003807-T-G **
3990590-T-C 4122549-T-C **
56842238-C-A **
17346138-C-A 15234258-C-A **
10770572-CCACCT-C **
16364058-CTATATATATATA-C 14252178-CTATATATATATA-C 27×TA**
6693284-C-A 6825243-C-A **
56842252-T-A **
4215884-G-T 4347843-G-T **
56842222-T-G **
19376196-G-T 17264316-G-T **
10693645-C-A **
10943109-T-C **
10943096-C-A **
28406869-CA-C 26260722-CA-C P1_gr2 **
28438228-T-A 26292081-T-A P1_gr2 **
10992355-C-A **
11646250-A-ATCAACCCCTG **
3790864-A-G 3922823-A-G **
10992352-C-A **
10992319-C-T **
10653911-C-T **
10653884-C-A **
19052414-CAA-C 16940534-CAA-C 24×A**
10653847-C-T **
10936208-T-A **
13597095-C-A 11441419-C-A **
26383339-G-T 24237192-G-T P1_Y1 **
18740864-A-T 16628984-A-T **
10927245-A-G **
4113116-TAAA-T 4245075-TAAA-T 16×A**
10939706-TCATTG-T **
18740851-TATAA-T 16628971-TATAA-T **
7160625-C-T 7292584-C-T **
56861581-A-C **
10754987-C-T **
10658601-C-A **
15700339-C-A 13588459-C-A **
4918270-G-A 5050229-G-A **
4293046-C-A 4425005-C-A **
10965084-T-C **
18082920-GT-G 15971040-GT-G 11×T**
10939718-A-T **
11021348-T-TTTCCGTTCCA **
13987196-C-A 11866490-C-A **
9191060-G-T 9353451-G-T **
9191040-A-T 9353431-A-T **
10885123-A-T **
10807065-T-C **
10957973-C-A **
21515743-G-A 19353857-G-A **
21515726-A-G 19353840-A-G **
21515706-CAA-C 19353820-CAA-C **
22963394-A-C 20801508-A-C **
3550645-C-A 3682604-C-A **
10845690-C-T **
26383322-C-A 24237175-C-A P1_Y1 **
7156697-C-A 7288656-C-A **
10807060-C-G **
10992381-T-A **
26170423-AAAGAAG-A 24024276-AAAGAAG-A P1_Y1 9×AAG**
11022413-C-T **
10692062-C-A **
10692052-A-C **
10692049-A-C **
19439630-AT-A 17327750-AT-A **
4179020-T-TAA 4310979-T-TAA 17×A**
56742692-G-C **
10770595-C-T **
16505988-CTTT-C 14394108-CTTT-C 31×T**
10958828-T-A **
6516602-C-A 6648561-C-A **
10785250-T-G **
28794206-T-C 26648059-T-C **
16298612-T-A 14186732-T-A **
10936394-A-G **
15323491-C-A 13211609-C-A **
27872479-GAA-G 25726332-GAA-G P1_Y2 10×A**
15400167-C-CAA 13288287-C-CAA 14×A**
28462085-C-A 26315938-C-A **
15491937-GTGTGTA-G 13380057-GTGTGTA-G **
13705560-G-A 11549884-G-A **
20326058-C-A 18164172-C-A P5_Dst **
10791329-C-T **
22277820-G-T 20115934-G-T DYZ19 **
3852240-C-A 3984199-C-A **
4049605-CTT-C 4181564-CTT-C 11×T**
22146771-C-A 19984885-C-A **
11006436-T-C **
10763143-CTCCATTCCAT-C **
28549247-G-T 26403100-G-T **
10685897-G-A **
10685889-T-C **
3158851-C-A 3290810-C-A **
10825315-C-T **
10992327-T-C **
26383328-C-A 24237181-C-A P1_Y1 **
17420932-C-A 15309052-C-A **
56734840-G-C **
56734845-G-C **
18196490-CAAAA-C 16084610-CAAAA-C 26×A**
10840895-G-T **
10755296-T-A **
14566480-C-A 12454680-C-A **
19356413-A-C 17244533-A-C **
10755658-T-A **
27583177-G-T 25437030-G-T P1_Y2 **
22253222-G-T 20091336-G-T DYZ19 **
10943064-T-C **
28794253-G-C 26648106-G-C **
28794217-G-A 26648070-G-A **
10788099-T-TTCCACTCCAA **
10747987-G-A **
59003743-A-G 56857596-A-G **
13461019-A-T 11305343-A-T **
10807085-C-G **
11022404-A-C **
8713097-C-A 8845056-C-A **
10884467-C-T **
10835589-T-G **
6631746-T-G 6763705-T-G BY907DF17 AM00499 S455 **
10906823-G-T **
28605533-C-A 26459386-C-A **
10807078-C-A **
17346126-G-T 15234246-G-T **
56841494-A-G **
23097911-C-A 20936025-C-A **
24404485-A-C 22258338-A-C **
6461055-C-A 6593014-C-A **
13460408-A-C 11304732-A-C **
11646247-G-T **
11646240-AT-A **
18204985-C-A 16093105-C-A 23×A**
11646239-A-AT **
24276835-A-C 22130688-A-C P3_b1 **
11001995-C-T **
7131369-A-C 7263328-A-C **
10961225-C-A **
9191048-A-T 9353439-A-T **
21987362-GTA-G 19825476-GTA-G **
10844210-C-A **
10965096-C-CCACCA **
19439639-A-G 17327759-A-G **
7229045-C-A 7361004-C-A **
21515723-C-T 19353837-C-T **
17127355-C-A 15015475-C-A **
4208826-G-A 4340785-G-A **
4123997-G-A 4255956-G-A **
4049672-C-A 4181631-C-A **
19036703-G-GTT 16924823-G-GTT 40×T**
3385708-C-A 3517667-C-A **
3267728-A-T 3399687-A-T **
3131092-C-A 3263051-C-A **
3110402-G-T 3242361-G-T **
3025843-G-T 3157802-G-T **
2926383-A-G 3058342-A-G **
2859161-T-A 2991120-T-A **
13488965-G-T 11333289-G-T **
56829972-C-A **
21515720-G-A 19353834-G-A **
13540233-C-A 11384557-C-A **
16401981-G-GTA 14290101-G-GTA 9×TA**
28800767-T-A 26654620-T-A **
10678669-A-G **
13535727-GTATATA-G 11380051-GTATATA-G **
10958856-C-A **
21515788-G-A 19353902-G-A **
21939545-C-A 19777659-C-A **
10875820-C-A **
23059654-A-C 20897768-A-C **
10969238-C-A **
10992347-C-A **
7396357-C-A 7528316-C-A **
10967512-C-A **
7256031-G-T 7387990-G-T **
4015479-T-TA 4147438-T-TA 12×A**
10791345-C-T **
10914456-G-A **
21072233-C-A 18910347-C-A **
13222643-G-A 11066967-G-A **
10956509-C-A **
8723721-C-A 8855680-C-A **
7172515-A-C 7304474-A-C **
11022400-T-C **
10900010-C-A **
18819615-C-A 16707735-C-A **
21132677-C-A 18970791-C-A **
7028697-A-G 7160656-A-G **
26383337-C-G 24237190-C-G P1_Y1 **
10991629-C-A **
9836887-TG-T 9999278-TG-T **
13258359-A-T 11102683-A-T 9×T**
11004484-C-T **
19873497-G-T 17761617-G-T P5_Prx **
16904664-C-A 14792784-C-A 40×A**
7132016-C-A 7263975-C-A **
28645845-C-A 26499698-C-A **
10825264-C-A **
28545301-G-T 26399154-G-T **
21037512-C-A 18875626-C-A **
10942953-G-T **
14366844-C-A 12246139-C-A **
11027066-C-T **
13870763-C-A 11750057-C-A **
10746644-T-A **
21515780-G-T 19353894-G-T **
21515778-A-G 19353892-A-G Z38170 **
21515777-G-T 19353891-G-T **
22774864-C-A 20612978-C-A **
21515734-G-A 19353848-G-A **
21515733-G-C 19353847-G-C **
21515735-C-T 19353849-C-T **
11027040-A-T **
11027054-C-G **
11027061-T-A **
21715275-T-A 19553389-T-A ***
23486629-A-AAGATAG 21324743-A-AAGATAG 6×AGATAG***
19411918-G-GA 17300038-G-GA ***
21732690-A-AT 19570804-A-AT 8×T***
21194348-C-A 19032462-C-A ***
10808609-T-G ***
21651010-C-A 19489124-C-A ***
17292636-C-CT 15180756-C-CT 10×T***
23267750-G-GA 21105864-G-GA 10×A***
13453693-C-T 11298017-C-T ***
18596093-C-T 16484213-C-T A4950 ***
58976033-G-A 56829886-G-A ***
24109159-G-T 21963012-G-T P3_b1 ***
19186975-CT-C 17075095-CT-C 10×T***
2836350-CTTTTT-C 2968309-CTTTTT-C 19×T***
25995056-C-T 23848909-C-T P1_Y1 ***
28549859-C-A 26403712-C-A ***
13852011-C-CGAATG 11731305-C-CGAATG 11×GAATG***
11026015-TTCCAC-T ***
21972117-A-C 19810231-A-C Y57446 ***
2747768-CAT-C 2879727-CAT-C ***
18052272-G-A 15940392-G-A Y54135 ***
9577022-A-C 9739413-A-C ZZ61A19290 IR3_Prx ***
21918136-T-C 19756250-T-C ***
8849102-C-G 8981061-C-G FGC14113FGC14113 Y3470 ***
23439249-C-A 21277363-C-A ***
22189651-C-T 20027765-C-T BY31074 ***
21265178-G-A 19103292-G-A S1313 AM00496 ***
21986619-C-CT 19824733-C-CT 8×T***
8888484-A-G 9020443-A-G Y48060 BY31060 ***
22834798-C-A 20672912-C-A Y58361 BY31077 ***
21858578-A-T 19696692-A-T ***
24047570-G-T 21901423-G-T ***
4244745-T-C 4376704-T-C ***
21133556-CAAA-C,CA 18971670-CAAA-C,CA 23×A***
10969256-C-G ***
10789365-C-A ***
14886398-TC-T 12774464-TC-T ***
10987169-C-CTCCAT ***
13487742-CT-CC,T 11332066-CT-CC,T ***
16831663-C-CTT 14719783-C-CTT 12×T***
15211049-G-T 13099135-G-T ***
16237221-ATTTT-A 14125341-ATTTT-A 16×T***
15048489-GTT-G,GT 12936580-GTT-G,GT 19×T***
13488794-C-A,T 11333118-C-A,T ***
22868285-TAAAA-T 20706399-TAAAA-T 27×A***
11004509-G-C ***
11004520-G-C ***
10969257-A-G ***
22360939-C-A 20199053-C-A DYZ19 ***
10969240-C-A ***
10776516-C-A ***
10762672-G-T ***
9836934-C-A 9999325-C-A ***
9807701-C-A 9970092-C-A ***
9500240-T-C 9662631-T-C ***
9434550-T-TA 9596941-T-TA 8×A***
7126524-CTTTT-C 7258483-CTTTT-C 23×T***
10987913-C-A ***
2752415-TAAAAA-T 2884374-TAAAAA-T 23×A***
7195227-CAAAA-C,CAAAAA 7327186-CAAAA-C,CAAAAA 17×A***
10776522-CA-C,CG ***
6427686-C-A 6559645-C-A ***
13453692-C-T 11298016-C-T ***
14547173-C-A 12435374-C-A ***
17637638-AACACAC-A 15525758-AACACAC-A 21×AC***
10799642-C-G ***
11004425-C-T ***
8843536-ATTT-A,AT 8975495-ATTT-A,AT 23×T***
16651433-C-CT 14539553-C-CT 16×T***
10790237-T-A ***
19411143-C-A 17299263-C-A ***
16188181-CTTT-C,CTT 14076301-CTTT-C,CTT 16×T***
19125713-AAAAAAT-A 17013833-AAAAAAT-A ***
19022251-G-T 16910371-G-T ***
18761855-C-T 16649975-C-T ***
10776502-C-CGGATG ***
18564299-C-A 16452419-C-A ***
17951464-TCT-T,TCA 15839584-TCT-T,TCA ***
17564903-C-A 15453023-C-A ***
16913422-CAAAAAA-C 14801542-CAAAAAA-C 21×A***
23351487-A-AT 21189601-A-AT 9×T***
17302965-C-A 15191085-C-A ***
17082077-C-A 14970197-C-A ***
16581436-TA-T,TAA 14469556-TA-T,TAA 15×A***
16292051-C-A 14180171-C-A ***
16060068-C-A 13948188-C-A ***
15956785-T-C 13844905-T-C ***
13719473-A-G 11563797-A-G ***
15565341-C-A 13453461-C-A ***
15520492-C-A 13408612-C-A ***
15419173-C-A 13307293-C-A ***
15258371-T-C 13146455-T-C ***
15174510-C-A 13062596-C-A ***
15161292-GAAAAA-G 13049378-GAAAAA-G 22×A***
23505519-C-A 21343633-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 155090925212975879537505234
Used in age calculations925212975879537505234
Counts of SNPs4039
Variant counts last updated 2018-05-16 18:02:19.



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