Cummings

BigY2: B15088
MDKA Birth: United States > Kentucky

Tree Position

R-M269 > L23 > Z2103 > Z2106 > Z2108 > Z2110 > CTS7556 > Y5589 > BY250 > BY3717 > BY20217

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
B15088
26014578-T-C 23868431-T-C P1_Y1 A*
13449882-C-A 11294206-C-A A*
25962366-G-A 23816219-G-A P1_Y1 A*
25892240-T-C 23746093-T-C P1_Y1 A*
19817049-T-G 17705169-T-G P5_Prx A*
28817055-T-C 26670908-T-C A*
13451255-T-C 11295579-T-C A*
22265102-G-A 20103216-G-A DYZ19 A*
22274458-C-G 20112572-C-G DYZ19 A*
22313037-C-A 20151151-C-A DYZ19 A*
6210823-C-T 6342782-C-T IR3_Dst A*
25857440-C-T 23711293-C-T P1_Y1 A*
25872517-A-G 23726370-A-G P1_Y1 A*
13451287-C-T 11295611-C-T A*
17781045-C-A 15669165-C-A Y100207 YY+
17845762-T-C 15733882-T-C Y100376 YY+
17816601-T-A 15704721-T-A Y100319 YY+
23265886-C-A 21104000-C-A Y111140 YY+
22523836-A-T 20361950-A-T Y5972 ZS9232 Y+
15739684-T-C 13627804-T-C Y94625 Y+
22507510-A-C 20345624-A-C BY225363 DYZ19 +
23003484-A-C 20841598-A-C Y110324 YY+
7205934-G-T 7337893-G-T Y83598 YY+
22907411-G-GA 20745525-G-GA +
17906397-G-A 15794517-G-A Y100602 YY+
9813709-C-CG 9976100-C-CG +
16271537-C-T 14159657-C-T Y95809 YY+
16371309-T-C 14259429-T-C Y96127 YY+
9121930-G-A 9284321-G-A BY78294 Y+
22356436-C-T 20194550-C-T BY217629 DYZ19 +
22238569-C-A 20076683-C-A BY52140 DYZ19 +
21479166-A-G 19317280-A-G Y106605 YY+
21901399-G-GT 19739513-G-GT +
7189341-CAGGAGGCGG-C 7321300-CAGGAGGCGG-C +
6816336-A-G 6948295-A-G Y82612 YY+
13203519-C-G 11047843-C-G BY84339 +
9850337-G-C 10012728-G-C Y14725 BY926 YY+
22460339-C-T 20298453-C-T BY47342 DYZ19 +
13203863-G-T 11048187-G-T BY84350 +
21462353-AGTGT-A 19300467-AGTGT-A 16×GT+
9850346-A-G 10012737-A-G L1444 BY16472Z17640 Y9130 YY+
13705927-T-G 11550251-T-G BY89180 +
3641092-CTCTTTCTT-C 3773051-CTCTTTCTT-C 13×TCTT+
18936866-G-A 16824986-G-A Y103091 YY+
13706409-G-C 11550733-G-C BY89229 +
7646831-G-A 7778790-G-A BZ95 Z36006 YY+
19317382-G-GT 17205502-G-GT +
19188523-C-G 17076643-C-G Y103942 YY+
7878732-A-T 8010691-A-T Y85239 YY+
22345973-A-C 20184087-A-C DYZ19 *
10858845-C-A FT227820 **
9953259-C-A 10115650-C-A **
9962538-C-A 10124929-C-A **
9689078-G-T 9851469-G-T IR3_Prx 15×T**
10835412-A-C **
10850098-G-T **
9942173-C-T 10104564-C-T **
10850131-C-T **
9724101-T-A 9886492-T-A IR3_Prx **
9942160-C-G 10104551-C-G **
10884186-C-G **
10819202-A-G **
10877771-T-G **
9942157-T-A 10104548-T-A **
9942152-G-A 10104543-G-A **
10874310-G-C **
10819231-A-C **
10005954-T-G 10168345-T-G **
10782945-CAGCTG-C **
10672259-T-C **
10663657-C-T **
10656277-C-T **
10652106-C-T **
10652101-C-G **
10884703-A-G **
10663661-C-G **
10663664-C-T **
10663668-ACCCTGCTGCT-A **
10668702-A-G **
10673076-C-T **
10782943-C-G **
10678789-C-A **
10678905-C-T **
10687239-A-C **
10075731-G-T 10238122-G-T **
10760685-T-A **
10782900-C-CAACTG **
10782908-T-G **
9990956-T-C 10153347-T-C **
10782919-T-TACGCA **
10663658-A-T **
2975499-G-T 3107458-G-T **
10893812-CA-C **
13482922-TG-T 11327246-TG-T **
11035384-C-A **
11035394-G-A **
11035409-C-T **
11035414-C-A **
11035443-A-G **
13214065-T-C 11058389-T-C **
13226693-G-A 11071017-G-A **
13229869-C-A 11074193-C-A **
13237847-C-A 11082171-C-A FT441621 **
13257471-C-A 11101795-C-A **
13354872-AC-A 11199196-AC-A **
13410082-C-A 11254406-C-A **
13489480-A-G 11333804-A-G **
11025599-G-T **
13504780-T-C 11349104-T-C **
13505150-C-A 11349474-C-A **
13565487-C-A 11409811-C-A **
13595652-C-T 11439976-C-T **
13628764-C-T 11473088-C-T **
13641152-C-G 11485476-C-G **
13645589-C-A 11489913-C-A **
11658195-T-A **
11669469-G-T **
11677361-G-T **
13856622-G-T 11735916-G-T **
13898743-A-C 11778037-A-C **
13898750-A-T 11778044-A-T **
11030147-T-C **
11023176-C-T **
10921745-T-G **
10969666-A-T **
10924306-C-G **
10927960-A-G **
10931416-T-A **
10931486-G-T **
10935553-A-T **
10935561-C-T **
10942782-A-T **
10942810-C-G **
10943198-A-G **
10953965-C-A **
10965329-C-G **
10967335-G-A **
10971949-C-CGCCTCTCCAT **
11023172-A-AC **
10977217-C-A **
10981673-C-A **
10983352-A-C **
10983382-A-C **
10986452-A-C **
10986725-G-T **
10995726-C-A **
10995790-A-T **
11003159-A-C **
11003173-T-C **
11016383-A-C **
11017668-G-C **
11019259-C-T **
9689074-G-T 9851465-G-T IR3_Prx **
7918490-C-A 8050449-C-A **
9441526-C-A 9603917-C-A **
4789860-C-A 4921819-C-A **
3900518-G-T 4032477-G-T **
3909105-G-A 4041064-G-A **
4022277-C-A 4154236-C-A **
4127546-G-A 4259505-G-A **
4169030-C-A 4300989-C-A **
4388753-A-T 4520712-A-T **
4441074-T-A 4573033-T-A **
4443460-T-A 4575419-T-A **
4471654-C-T 4603613-C-T **
4640268-C-A 4772227-C-A **
4687830-A-G 4819789-A-G **
4779887-A-G 4911846-A-G **
4805240-A-C 4937199-A-C **
3828969-G-A 3960928-G-A **
4941046-A-G 5073005-A-G **
4968309-T-G 5100268-T-G **
4968333-A-C 5100292-A-C **
5061046-T-C 5193005-T-C **
5186616-A-T 5318575-A-T **
5190033-T-G 5321992-T-G **
5242889-CT-C 5374848-CT-C **
5252108-G-C 5384067-G-C **
5294450-T-A 5426409-T-A **
5495327-C-A 5627286-C-A **
5603901-T-C 5735860-T-C **
5708344-T-G 5840303-T-G **
3900496-A-G 4032455-A-G **
3825596-G-T 3957555-G-T **
5835633-C-A 5967592-C-A **
3081272-G-T 3213231-G-T **
2759587-T-A 2891546-T-A **
2759589-C-T 2891548-C-T **
2759592-G-C 2891551-G-C **
2759593-G-A 2891552-G-A **
2812888-A-G 2944847-A-G **
2888868-CTCAAA-C 3020827-CTCAAA-C **
2900618-T-G 3032577-T-G **
2900788-C-A 3032747-C-A **
2948334-A-T 3080293-A-T **
16102028-G-T 13990148-G-T BY40506 P8_Prx **
2980408-G-T 3112367-G-T **
3078471-T-G 3210430-T-G **
3092018-C-T 3223977-C-T **
3806966-G-T 3938925-G-T **
3093316-G-T 3225275-G-T **
3110256-C-A 3242215-C-A **
3174493-G-T 3306452-G-T **
3274803-C-A 3406762-C-A **
3291748-T-A 3423707-T-A **
3343964-T-A 3475923-T-A **
3346480-C-A 3478439-C-A **
3347552-C-A 3479511-C-A **
3437016-A-G 3568975-A-G **
3559912-C-A 3691871-C-A **
3790876-G-T 3922835-G-T **
3804229-C-T 3936188-C-T **
5785442-A-C 5917401-A-C **
5874264-G-C 6006223-G-C **
9075969-T-C 9238360-T-C **
7894913-C-A 8026872-C-A **
7306414-G-C 7438373-G-C **
7313612-G-A 7445571-G-A **
7313620-G-T 7445579-G-T **
7313623-A-C 7445582-A-C **
7332900-T-G 7464859-T-G FTA9679 **
7338649-A-C 7470608-A-C **
7347641-A-C 7479600-A-C **
7352995-C-A 7484954-C-A **
7409542-C-A 7541501-C-A **
7448416-G-A 7580375-G-A IR1_L **
7471043-T-C 7603002-T-C IR1_L **
7723035-T-G 7854994-T-G **
13933756-G-C 11813050-G-C **
7259137-C-A 7391096-C-A **
7969622-G-T 8101581-G-T **
7970917-C-A 8102876-C-A **
8052415-T-C 8184374-T-C **
8333558-C-T 8465517-C-T **
8674089-T-A 8806048-T-A **
8720638-C-A 8852597-C-A **
8786740-A-G 8918699-A-G **
8853449-GA-G 8985408-GA-G **
8856946-C-A 8988905-C-A **
9056307-T-G **
9040764-T-C 9203155-T-C **
9063609-A-C 9226000-A-C **
7285196-G-A 7417155-G-A **
7256129-A-G 7388088-A-G **
6001524-C-A 6133483-C-A **
6827667-C-A 6959626-C-A **
6051124-T-C 6183083-T-C **
6051129-T-G 6183088-T-G **
6359173-C-A 6491132-C-A **
6359702-T-A 6491661-T-A **
6461479-C-A 6593438-C-A **
6506692-C-A 6638651-C-A **
6519646-A-G 6651605-A-G **
6535977-G-T 6667936-G-T **
6671757-A-T 6803716-A-T **
6688686-T-G 6820645-T-G **
6773538-TTTCC-T 6905497-TTTCC-T **
6773753-A-C 6905712-A-C **
7017144-A-T 7149103-A-T **
7240921-C-A 7372880-C-A **
7017212-T-A 7149171-T-A **
7028632-C-A 7160591-C-A **
7029542-G-T 7161501-G-T **
7029558-G-T 7161517-G-T **
7029602-A-C 7161561-A-C **
7043512-C-A 7175471-C-A **
7110437-C-A 7242396-C-A **
7152929-A-T 7284888-A-T **
7157945-C-A 7289904-C-A **
7162427-C-A 7294386-C-A **
7209864-T-C 7341823-T-C **
7223385-C-G 7355344-C-G **
13902804-C-A 11782098-C-A **
14532000-C-T 12420201-C-T **
13933761-T-C 11813055-T-C **
21935157-C-A 19773271-C-A **
21167282-C-A 19005396-C-A **
21206907-T-A 19045021-T-A **
21244849-G-T 19082963-G-T **
21375647-C-A 19213761-C-A **
21380245-C-A 19218359-C-A **
21408379-T-C 19246493-T-C FT205459 **
21426967-A-T 19265081-A-T **
21462585-A-C 19300699-A-C **
21551536-A-T 19389650-A-T **
21802789-A-T 19640903-A-T **
21807113-C-A 19645227-C-A **
21840059-C-A 19678173-C-A **
21946457-CT-C 19784571-CT-C **
21069898-T-A 18908012-T-A **
21946460-C-CA 19784574-C-CA **
22063918-CA-C 19902032-CA-C 8×A**
22088802-G-A 19926916-G-A **
22108734-C-A 19946848-C-A **
22166532-CT-C 20004646-CT-C **
22169617-C-A 20007731-C-A **
22171081-T-A 20009195-T-A **
22193024-C-A 20031138-C-A **
22199484-C-A 20037598-C-A **
22453038-G-A 20291152-G-A DYZ19 **
22511449-G-A 20349563-G-A DYZ19 **
22540503-C-A 20378617-C-A **
21087162-C-A 18925276-C-A **
21069879-A-T 18907993-A-T **
22564922-C-A 20403036-C-A **
19436766-G-A 17324886-G-A **
18733473-A-G 16621593-A-G **
18754879-C-T 16642999-C-T FT72449 **
18864547-AT-A 16752667-AT-A **
18933647-A-G 16821767-A-G **
18965978-C-T 16854098-C-T **
18980506-A-T 16868626-A-T **
18994756-A-G 16882876-A-G **
19300206-C-A 17188326-C-A **
19333431-C-A 17221551-C-A **
19356383-T-A 17244503-T-A **
19356411-G-A 17244531-G-A **
19412504-C-T 17300624-C-T **
19531564-C-G 17419684-C-G **
21006530-A-G 18844644-A-G P4_Dst **
19544160-C-A 17432280-C-A **
19732421-C-CA 17620541-C-CA P5_Prx **
19831066-A-C 17719186-A-C P5_Prx **
20230112-C-G 18068226-C-G P5_Dst **
20230154-A-AT 18068268-A-AT P5_Dst **
20593261-A-C 18431375-A-C P5_Dst **
20593281-T-G 18431395-T-G P5_Dst **
20671508-A-G 18509622-A-G P4_Prx **
20829774-C-A 18667888-C-A P4_Gap **
20888437-A-G 18726551-A-G P4_Dst **
21006492-C-T 18844606-C-T P4_Dst **
21006524-A-G 18844638-A-G P4_Dst **
22561365-T-C 20399479-T-C **
22580151-C-A 20418265-C-A **
18730719-T-G 16618839-T-G **
28588422-T-G 26442275-T-G **
27423572-T-A 25277425-T-A P1_g3 **
27423576-T-A 25277429-T-A P1_g3 **
27535808-G-C 25389661-G-C P1_Y2 **
27633600-C-A 25487453-C-A P1_Y2 **
27641725-C-T 25495578-C-T P1_Y2 **
28468729-A-G 26322582-A-G **
28475062-C-A 26328915-C-A **
28478331-A-T 26332184-A-T **
28496920-A-T 26350773-A-T **
28521626-C-A 26375479-C-A **
28585443-G-T 26439296-G-T **
28588384-G-T 26442237-G-T **
28605258-G-T 26459111-G-T **
26379148-T-C 24233001-T-C P1_Y1 **
28612124-G-C 26465977-G-C **
28612175-G-C 26466028-G-C **
28620791-T-A 26474644-T-A **
28620797-T-C 26474650-T-C **
28635064-C-A 26488917-C-A **
28656209-G-C 26510062-G-C **
28656257-T-C 26510110-T-C **
28725213-A-G 26579066-A-G **
56825763-A-G **
56849677-G-T **
56858209-G-T **
56861306-G-A **
26427168-G-T 24281021-G-T P1_Y1 **
26248086-T-A 24101939-T-A P1_Y1 **
22602471-A-G 20440585-A-G **
23343689-A-T 21181803-A-T **
22613747-C-G 20451861-C-G **
22625022-A-C 20463136-A-C **
22713348-G-T 20551462-G-T **
22730395-A-G 20568509-A-G **
22893464-C-T 20731578-C-T FT366284 **
22902026-A-G 20740140-A-G **
22980805-T-A 20818919-T-A **
22993478-A-T 20831592-A-T **
23199772-G-A 21037886-G-A **
23202682-C-A 21040796-C-A **
23272489-T-C 21110603-T-C **
23337125-G-C 21175239-G-C **
23380999-T-A 21219113-T-A **
26093335-A-T 23947188-A-T P1_Y1 **
23421185-C-A 21259299-C-A **
23569362-GC-G 21407476-GC-G **
21766686-G-T **
21766754-A-AC **
24210522-G-T 22064375-G-T P3_b1 **
24241200-TCACA-T 22095053-TCACA-T P3_b1 11×CA**
24266708-T-G 22120561-T-G P3_b1 **
24459489-C-A 22313342-C-A **
25651665-C-A 23505518-C-A P1_b3 **
25651803-C-A 23505656-C-A P1_b3 **
25880471-GTGTGT-G 23734324-GTGTGT-G P1_Y1 **
26093315-GC-G 23947168-GC-G P1_Y1 **
18730750-T-G 16618870-T-G **
18695924-T-A 16584044-T-A **
14143962-G-T 12023256-G-T **
15882651-G-C 13770771-G-C **
14909712-T-C 12797779-T-C **
14932064-G-A 12820129-G-A **
15091759-C-A 12979848-C-A **
15126177-C-A 13014264-C-A FT335959 **
15323531-C-A 13211649-C-A **
15352879-T-AAA 13240998-T-AAA **
15394388-A-G 13282508-A-G **
15446724-G-A 13334844-G-A **
15557956-C-A 13446076-C-A **
15748084-C-T 13636204-C-T **
15804267-C-A 13692387-C-A **
15842762-C-A 13730882-C-A **
15894620-G-C 13782740-G-C **
14858686-G-TT 12746752-G-TT **
15921369-A-G 13809489-A-G **
15926937-C-A 13815057-C-A **
15937261-C-A 13825381-C-A **
15987339-C-A 13875459-C-A **
16004232-A-G 13892352-A-G **
16008914-G-T 13897034-G-T **
16033754-C-A 13921874-C-A **
16048188-C-T 13936308-C-T **
16077577-A-G 13965697-A-G **
16092996-G-A 13981116-G-A **
16184338-C-A 14072458-C-A **
16241750-A-T 14129870-A-T **
14867261-A-G 12755331-A-G **
14805997-C-A 12694068-C-A **
16342189-AGCTAT-A 14230309-AGCTAT-A **
14413136-T-C 12292433-T-C **
14181517-T-C 12060811-T-C **
14221013-T-C 12100307-T-C **
14228669-C-T 12107963-C-T **
14251759-C-T 12131053-C-T **
14300068-T-C 12179362-T-C **
14364203-T-G 12243498-T-G **
14380003-A-C 12259299-A-C **
14409049-T-C 12288346-T-C **
14413121-C-G 12292418-C-G **
14413122-A-G 12292419-A-G FT61662 **
14413127-T-C 12292424-T-C Y49513 **
14413128-T-C 12292425-T-C **
14423907-TAAATAA-T 12303182-TAAATAA-T **
14743673-G-A 12631742-G-A **
14530437-C-T 12418638-C-T **
10663631-C-A **
14549659-T-C 12437860-T-C **
14551565-C-A 12439766-C-A **
14567034-C-A 12455234-C-A **
14570888-G-T 12459088-G-T **
56865804-C-A **
14639078-T-C 12527147-T-C **
14661594-C-A 12549659-C-A Y91925 **
14698433-T-G 12586499-T-G **
14718006-C-T 12606074-C-T **
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10769005-T-A ***
58979765-C-G 56833618-C-G ***
14977277-C-T 12865352-C-T ***
58979764-C-A 56833617-C-A ***
23039648-C-A 20877762-C-A ***
10686545-G-C ***
10894024-G-T ***
14061365-CA-C 11940659-CA-C ***
10785274-A-ACTCTG ***
23391527-C-T 21229641-C-T ***
11652854-G-A ***
58981820-T-C,G 56835673-T-C,G ***
14404829-C-A 12284126-C-A ***
15179155-C-A 13067241-C-A ***
2979311-T-G 3111270-T-G F14732 ***
14914655-C-T 12802722-C-T ***
21281493-C-A 19119607-C-A ***
4887931-C-A 5019890-C-A ***
13585291-C-A 11429615-C-A ***
2773691-TAA-T,TA 2905650-TAA-T,TA 19×A***
19054342-CTTT-C 16942462-CTTT-C 16×T***
7258554-C-A 7390513-C-A ***
15477283-C-A 13365403-C-A ***
10652305-G-T ***
18653677-T-A 16541797-T-A ***
9839544-T-C 10001935-T-C ***
9859174-C-A 10021565-C-A ***
13973219-C-A 11852513-C-A ***
10023406-G-A 10185797-G-A FT376423 ***
18746982-CTT-C 16635102-CTT-C 13×T***
15542702-G-T 13430822-G-T ***
14730391-C-A 12618459-C-A ***
7108598-A-T 7240557-A-T ***
7088181-T-A 7220140-T-A ***
15491941-GTATATATATATATATATATA-G,GTA 13380061-GTATATATATATATATATATA-G,GTA 19×TA***
18706859-CA-C,CAA 16594979-CA-C,CAA 11×A***
18717876-TAAAA-T 16605996-TAAAA-T 16×A***
7312638-G-A 7444597-G-A ***
10987169-C-T ***
21146263-G-T 18984377-G-T ***
10816502-G-T ***
19469877-A-T 17357997-A-T 12×C***
8734884-C-A 8866843-C-A ***
17895202-G-T 15783322-G-T ***
18855403-CTTT-C 16743523-CTTT-C 14×T***
10958336-T-C ***
56831142-ACT-A ***
21153522-G-T 18991636-G-T ***
16786199-A-T 14674319-A-T ***
15401860-C-CA 13289980-C-CA 9×A***
10887966-C-G ***
17397253-A-AT,ATT 15285373-A-AT,ATT 16×T***
7784622-C-A 7916581-C-A ***
10657387-T-C ***
14391874-TAA-T,TA 12271170-TAA-T,TA 15×A***
10989520-T-A,C ***
10987921-T-A ***
13448322-TTCCAG-T 11292646-TTCCAG-T ***
7098886-T-A 7230845-T-A ***
21138761-AG-A 18976875-AG-A 8×G***
15260684-CTTTTTTTTTTTT-C,CT 13148768-CTTTTTTTTTTTT-C,CT 25×T***
18108457-CTT-C,CT 15996577-CTT-C,CT 13×T***
10799490-A-G ***
10850686-A-C ***
2810391-A-G 2942350-A-G ***
22011689-C-A 19849803-C-A ***
5393271-GGGA-G 5525230-GGGA-G ***
10989482-T-C ***
10887984-T-C ***
21200894-CAA-C,CA 19039008-CAA-C,CA 14×A***
10799491-G-T ***
10799481-C-T ***
10831542-A-AT ***
10799472-G-T ***
10799466-C-A ***
16768526-G-A 14656646-G-A ***
11003740-C-T ***
22241167-GA-G 20079281-GA-G DYZ19 ***
5170247-G-A 5302206-G-A ***
8479417-TC-C,TT 8611376-TC-C,TT ***
22023201-CTTTTTTTT-C 19861315-CTTTTTTTT-C 20×T***
10746923-C-A ***
56833308-TGCCAT-C,TTCCAC ***
8641309-T-TA 8773268-T-TA 16×A***
19412026-A-AAG 17300146-A-AAG ***
10997126-A-T ***
10997117-T-C FT439702 ***
10880298-A-G ***
21690984-C-A 19529098-C-A ***
19187443-ACA-A,ACC 17075563-ACA-A,ACC ***
10987879-C-CCT ***
10657277-T-A ***
19406205-GA-G 17294325-GA-G 9×A***
19412006-GAGAAAGAAAGAAAGAAAGAA-G 17300126-GAGAAAGAAAGAAAGAAAGAA-G 14×AGAA***
17895197-G-T 15783317-G-T ***
11643713-G-A ***
19415682-C-A 17303802-C-A ***
10887395-C-T ***
19477073-T-C 17365193-T-C ***
56829798-CTCCACTCCACTCTAG-C ***
10887983-A-G ***
8125046-AAGAA-A,AAGAAG 8257005-AAGAA-A,AAGAAG ***
23059593-AT-A,ATT 20897707-AT-A,ATT 12×T***
14519122-GA-G 12407323-GA-G 11×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B15088967544978768887770247
Used in age calculations967544978768887770247
Counts of SNPs1918
Variant counts last updated 2022-07-30 03:29:55.


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