Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > Z46512 > FGC78762 > ZZ19 > Z31644 > Z42772 > 8742535-G-GT > BY4143 > PH2054 > BY19173

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
19846629-T-G 17734749-T-G BY1603 P5_Prx A*
19930954-A-T 17819074-A-T P5_Prx A*
22231574-C-A 20069688-C-A BY16355 DYZ19 A*
19920004-G-A 17808124-G-A E766 P5_Prx A*
19831584-A-G 17719704-A-G ZS3709 Y1896 P5_Prx A*
22291534-G-C 20129648-G-C DYZ19 A*
22257045-A-G 20095159-A-G BY2805 DYZ19 A*
22244306-C-A 20082420-C-A DYZ19 A*
18351965-T-G 16240085-T-G E898 P6_Prx A*
28817695-A-T 26671548-A-T A*
13687209-A-T 11531533-A-T A*
28817533-G-C 26671386-G-C A*
21178998-A-G 19017112-A-G Y16665 YYA*
20646333-C-T 18484447-C-T P4_Prx A*
20629092-C-T 18467206-C-T P4_Prx A*
19789601-G-A 17677721-G-A P5_Prx A*
23174469-A-G 21012583-A-G YA*
18359685-T-A 16247805-T-A P6_Prx A*
6111185-C-CA 6243144-C-CA A*
23714782-G-T 21552896-G-T SUR66 A*
17989081-G-A 15877201-G-A P7_Prx YA*
17992361-T-A 15880481-T-A P7_Prx YA*
18338887-A-G 16227007-A-G P6_Prx A*
26151433-A-G 24005286-A-G BY46203 P1_Y1 A*
28817617-T-A 26671470-T-A A*
19759923-T-C 17648043-T-C P5_Prx A*
6106629-T-G 6238588-T-G BY16700 A*
6106896-C-T 6238855-C-T A16709 A*
6107138-A-G 6239097-A-G BY45851 A*
19657846-C-T 17545966-C-T BY2777 P5_Prx A*
28817680-A-T 26671533-A-T A*
19705898-A-G 17594018-A-G P5_Prx A*
6271441-C-T 6403400-C-T FT18396 IR3_Dst A*
13687725-T-C 11532049-T-C A*
19573693-A-G 17461813-A-G ZS1823 P5_Prx YA*
19816546-G-C 17704666-G-C FGC54023 P5_Prx A*
26064759-A-G 23918612-A-G BY443 P1_Y1 A*
25969849-T-A 23823702-T-A BY40568 P1_Y1 A*
26160914-T-A 24014767-T-A P1_Y1 A*
17988418-T-A 15876538-T-A Y1892 P7_Prx YA*
25957213-T-G 23811066-T-G BY16398 P1_Y1 A*
6186483-A-C 6318442-A-C A17235 IR3_Dst A*
6214798-C-T 6346757-C-T BY21543 IR3_Dst A*
6309245-A-G 6441204-A-G A14844 A14828 IR3_Dst A*
6325313-A-T 6457272-A-T BY3400 IR3_Dst A*
7476576-G-A 7608535-G-A FGC44966 IR1_L A*
25943696-C-T 23797549-C-T P1_Y1 A*
18380139-T-C 16268259-T-C BY1428 P6_Prx A*
19783189-G-A 17671309-G-A A15121 P5_Prx A*
19809680-T-A 17697800-T-A A13455 P5_Prx A*
20661813-C-T 18499927-C-T A8207 BY1670 P4_Prx A*
13687057-G-T 11531381-G-T A*
24269090-C-T 22122943-C-T BY16406 P3_b1 A*
16121606-G-A 14009726-G-A Z18268 P8_Prx A*
23715836-G-A 21553950-G-A A*
23890856-C-T 21728970-C-T Y16649 YA*
6277021-G-A 6408980-G-A BY59568 IR3_Dst A*
24256415-C-T 22110268-C-T P3_b1 A*
19198969-G-GGT 17087089-G-GGT A*
22256982-T-G 20095096-T-G BY1881 DYZ19 A*
6104174-G-C 6236133-G-C FGC3549 A*
25956332-T-C 23810185-T-C BY2413 P1_Y1 A*
23718323-C-A 21556437-C-A A4901 A*
22290909-G-C 20129023-G-C BY216342 DYZ19 A*
22290889-G-T 20129003-G-T BY48505 DYZ19 A*
22282357-C-T 20120471-C-T BY165727 DYZ19 A*
20647539-G-T 18485653-G-T A202 ZS2500 P4_Prx A*
28817365-G-A 26671218-G-A A*
6171019-G-A 6302978-G-A IR3_Dst A*
6181555-A-AT 6313514-A-AT IR3_Dst A*
16491135-T-C 14379255-T-C CTS5815 PF6044 YA*
8202282-A-G 8334241-A-G Y16652 YYA*
6264647-G-C 6396606-G-C IR3_Dst A*
6222516-A-G 6354475-A-G IR3_Dst A*
15111148-G-. 12999235-C-G *
13982073-G-A 11861367-G-A CTS1600 AM00533 Y*
21447601-C-T 19285715-C-T Z2664 PF3802 YY*
19321949-C-T 17210069-C-T Z2660 CTS10194 PF3791 V4013 YY*
8571993-T-C 8703952-T-C PF3893 YY*
8627920-C-T 8759879-C-T FGC35583 YY*
18032844-A-G 15920964-A-G Z2647Z2658 CTS8444 YY*
16843773-C-CA 14731893-C-CA 8×A*
16671358-C-A 14559478-C-A CTS6096 PF3749 Z2654 YY*
16459388-T-C 14347508-T-C CTS5727 Z2653 PF3745 YY*
14810672-G-A 12698743-G-A Z2648 PF3714 CTS3296 YY*
14238700-G-T 12117994-G-T Z2647Z2647 CTS2257 PF3704 YY*
13670781-C-A 11515105-C-A Z2643 PF3690 FGC64978 *
22109679-C-T 19947793-C-T PF3820 Z2667 YY*
10025634-C-A 10188025-C-A FGC12073 Y*
8876165-G-T 9008124-G-T PF3669 Z2640 Y*
8567995-G-A 8699954-G-A Z2638 PF3664 V2273 YY*
8634040-C-A 8765999-C-A SK1266 S6631 YY*
8267123-C-G 8399082-C-G PF3652 YY*
8211182-C-G 8343141-C-G PF3651 YY*
7728344-G-T 7860303-G-T PF3644 Z2634 YY*
6652911-T-C 6784870-T-C Z2632 PF3626 YY*
6398212-T-C 6530171-T-C PF3619 *
15451348-G-T 13339468-G-T Z26381 YY*
24505970-CCTT-C 22359823-CCTT-C *
21709779-G-A 19547893-G-A Z2666 PF3812 YY*
8552155-C-A 8684114-C-A SK1270 YY*
15078469-C-. 12966559-G-C *
23646509-G-A 21484623-G-A Y16675 Y*
15037433-C-. 12925521-G-C *
15026424-A-. 12914512-C-A *
8204747-G-C 8336706-G-C Y5339 FGC18075 YY*
14898094-A-. 12786160-G-A *
14864191-T-. 12752257-C-T *
12707114-T-TTTTG 4×TTTG*
14637352-T-. 12525421-C-T *
14556851-C-. 12445052-T-C *
14433100-G-. 12312373-A-G *
23574749-C-CT 21412863-C-CT *
15509722-T-C 13397842-T-C BY102083 YY*
23566624-T-C 21404738-T-C M3935 PF3934 S6610 YY*
23739160-C-G 21577274-C-G Y16656 *
19109627-G-A 16997747-G-A Y16648 YY*
9861793-G-A 10024184-G-A PF3897 YY*
23765723-G-A 21603837-G-A Y16658 Y*
22443077-G-T 20281191-G-T 8831592-G-CFGC82874 DYZ19 *
8453396-C-T 8585355-C-T BY72905 YY*
8510462-A-G 8642421-A-G SK1271 YY*
23989924-C-G 21843777-C-G BY63604M4099 Y*
23759054-A-G 21597168-A-G PF3849 Z2674 Y*
2735658-C-T 2867617-C-T Y16418 YY*
22479517-T-A 20317631-T-A Z2669 DYZ19 *
23998554-T-C 21852407-T-C Y16659 Y*
8823900-C-T 8955859-C-T FGC18085 Y5340 YY*
8721536-AAAG-A 8853495-AAAG-A *
22115103-G-A 19953217-G-A YSC0000272 YY*
14230485-G-A 12109779-G-A Z26376 YY*
23154034-C-T 20992148-C-T L847 PF3841 YSC0000298 YY*
23113271-C-G 20951385-C-G M170[I]CTS11441 YY*
22919332-T-G 20757446-T-G FGC7872 YY*
22845794-A-G 20683908-A-G CTS10941 PF3838 YY*
22573702-G-A 20411816-G-A PF3837 YY*
22485425-A-T 20323539-A-T PF3833 DYZ19 *
22471388-C-T 20309502-C-T PF3831 DYZ19 *
22469589-G-T 20307703-G-T FGC8105 DYZ19 *
14222271-G-T 12101565-G-T BY422 YY*
22459264-G-A 20297378-G-A FGC7049 DYZ19 *
22100087-T-C 19938201-T-C PF3819 YY*
2723755-G-A 2855714-G-A CTS88 PF3571 V1031 YY*
21978311-GC-G 19816425-GC-G *
21841289-G-T 19679403-G-T PF3815 Y*
21839183-A-G 19677297-A-G PF3814 Y*
21689728-A-G 19527842-A-G Y1909 FGC2412 YY*
21556106-G-A 19394220-G-A M170[I]PF3809 YY*
21465033-C-A 19303147-C-A PF3804 YY*
14189829-G-T 12069123-G-T Y31614 BY16408 YY*
21452125-A-G 19290239-A-G PF3803 YY*
13891261-G-A 11770555-G-A S6659 PF3898 YY*
21402723-A-G 19240837-A-G M170[I]PF3800 YY*
21359407-C-G 19197521-C-G L503 YY*
13679294-G-T 11523618-G-T BY16407 *
23479970-A-C 21318084-A-C PF3847 YSC0000300 YY*
14244446-C-T 12123740-C-T Z26377 YY*
23979593-A-AAAAAC 21833446-A-AAAAAC 5×AAAAC*
14972202-TA-T 12860277-TA-T *
23156725-C-T 20994839-C-T CTS11540 PF3842 Y*
22525421-T-G 20363535-T-G PF3836 Y*
15339054-A-G 13227172-A-G Y16425 YY*
9000947-CT-C 9163338-CT-C *
15337178-T-C 13225296-T-C Z26380 YY*
9093819-A-G 9256210-A-G BY78022 Y*
22200336-G-A 20038450-G-A PF3822 YY*
15304351-C-T 13192450-C-T PF3903 S3330 YY*
9386752-C-T 9549143-C-T BY16403 Y*
9403861-G-A 9566252-G-A S12355 YY*
15029012-C-G 12917100-C-G Z26379 YY*
17525137-A-G 15413257-A-G CTS7540 PF3761 YY*
14822264-AT-A 12710331-AT-A *
15799074-C-T 13687194-C-T PF3735 CTS4752 YY*
15536759-T-C 13424879-T-C PF3728 CTS4272 V3027 YY*
13689194-C-A 11533518-C-A PF3691 *
9856175-G-A 10018566-G-A Y16667 YY*
9376351-T-C 9538742-T-C PF3672 Y*
8536868-C-G 8668827-C-G L758 PF3663 YSC0000285 V2199 YY*
8504226-G-A 8636185-G-A Y1934 YY*
8466652-G-A 8598611-G-A PF3660 V2048 YY*
9954320-G-A 10116711-G-A BY82141 Y*
10017745-T-G 10180136-T-G FGC18089 Y*
10031545-C-A 10193936-C-A BY46474 Y*
6273754-G-A 6405713-G-A FGC47151 IR3_Dst *
23563087-A-T 21401201-A-T Y16674 YY*
23495412-C-T 21333526-C-T PH5443 YY*
8117774-C-G 8249733-C-G Y16421 YY*
19225126-G-T 17113246-G-T PF3922 YY*
18964233-T-A 16852353-T-A Z26398 YY*
2660712-T-A 2792671-T-A SK1275 YY*
19001469-G-A 16889589-G-A PH4144 YY*
16756192-G-A 14644312-G-A Z26388 YY*
19107761-G-A 16995881-G-A PH4230 YY*
19148793-C-T 17036913-C-T Z26399 YY*
19150959-C-T 17039079-C-T Z26400 YY*
16666338-G-T 14554458-G-T Z26387 YY*
16526276-T-C 14414396-T-C S6728 PF3911 YY*
16414126-G-A 14302246-G-A Z26386 YY*
19186048-C-A 17074168-C-A BY127041 Y*
19358816-C-A 17246936-C-A Y16683 YY*
18886528-TGA-T 16774648-TGA-T *
19420184-G-T 17308304-G-T BY128943 YY*
19498475-C-A 17386595-C-A Z26401 YY*
7069574-C-T 7201533-C-T Y16650 YY*
16332338-G-C 14220458-G-C SK1276 YY*
16282755-C-T 14170875-C-T BY106638 YY*
7107991-G-A 7239950-G-A BY63366 YY*
16248397-G-A 14136517-G-A Z26385 YY*
15945757-G-A 13833877-G-A PH1912 YY*
15826294-C-A 13714414-C-A Z26384 YY*
21032419-T-A 18870533-T-A Y16430 Y*
18923595-A-T 16811715-A-T Z26397 YY*
18811190-G-A 16699310-G-A S6655 YY*
7518826-G-C 7650785-G-C Y16419 Y*
17872184-T-A 15760304-T-A BY117973 YY*
17144262-C-T 15032382-C-T PH2860 YY*
17185064-G-C 15073184-G-C BY112885 YY*
6063713-G-T 6195672-G-T S9168 *
13813931-G-A 11693225-G-A PF3693 Z2644 *
17255504-T-C 15143624-T-C BY423 YY*
17410706-C-T 15298826-C-T Y16653 YY*
17573042-TC-T 15461162-TC-T *
17598938-C-A 15487058-C-A SK1277 YY*
17668868-G-A 15556988-G-A S6603 YY*
17800885-CT-C 15689005-CT-C *
17845779-T-A 15733899-T-A Z26394 YY*
17880323-C-T 15768443-C-T BY118059 YY*
18639875-T-C 16527995-T-C BY122776 YY*
17894231-G-A 15782351-G-A Y16428 YY*
17926020-A-G 15814140-A-G PH3525 YY*
17949064-G-A 15837184-G-A PH3539 YY*
17951892-C-T 15840012-C-T S6669 YY*
6289689-A-G 6421648-A-G BY59577 IR3_Dst *
17137399-C-T 15025519-C-T PH2849 YY*
16966375-TTGCAAA-T 14854495-TTGCAAA-T *
18065776-T-C 15953896-T-C PH3653 YY*
16961554-TCA-T 14849674-TCA-T *
16918493-T-C 14806613-T-C Z26390 YY*
16873676-T-A 14761796-T-A Z26389 YY*
18393376-G-GT 16281496-G-GT P6_Gap *
21063329-G-A 18901443-G-A PH4607 YY*
21184198-G-A 19022312-G-A S22693 YY*
23509482-G-C 21347596-G-C Y16660 YY*
22631482-A-T 20469596-A-T BY44132 Y*
22294455-G-T 20132569-G-T BY216539 DYZ19 *
22303484-G-C 20141598-G-C BY48243 DYZ19 *
22420031-A-G 20258145-A-G Y5337 FGC18127 DYZ19 *
22437612-A-G 20275726-A-G BY40565 DYZ19 *
22438951-G-T 20277065-G-T BY4301 DYZ19 *
22445168-C-A 20283282-C-A BY40566 DYZ19 *
22466938-G-A 20305052-G-A FGC18130 DYZ19 *
22471211-G-T 20309325-G-T BY16412 DYZ19 *
22476769-C-G 20314883-C-G BY50571 DYZ19 *
22477646-C-G 20315760-C-G BY44017 DYZ19 *
22626296-C-A 20464410-C-A Z26408 SK1273 YY*
22796477-C-G 20634591-C-G Y5335 FGC18133 YY*
7919753-A-T 8051712-A-T Y16651 YY*
7956096-G-T 8088055-G-T Y5332 FGC18074 YY*
22829941-A-C 20668055-A-C Y16655 YY*
8001008-T-C 8132967-T-C PF3889 YY*
22899448-G-A 20737562-G-A S24842 YY*
23410866-G-A 21248980-G-A Z26409 YY*
22459490-G-A 20297604-G-A FGC18129 DYZ19 *
23130412-C-G 20968526-C-G Y58769 YY*
23149057-G-GA 20987171-G-GA *
15680425-T-C 13568545-T-C Z26383 Y*
23391059-A-AT 21229173-A-AT 8×T*
23413444-G-T 21251558-G-T PF3931 YY*
22293610-T-G 20131724-T-G BY40564 DYZ19 *
7811939-T-C 7943898-T-C Y16420 YY*
21319718-C-T 19157832-C-T Y16684 YY*
21693717-C-A 19531831-C-A Z26405 YY*
16182699-A-AT 14070819-A-AT 10×T*
21384092-C-A 19222206-C-A Y16673 YY*
7642686-G-A 7774645-G-A Y16677 YY*
7658938-G-T 7790897-G-T Y16678 YY*
21384132-G-C 19222246-G-C Z26403 YY*
7671807-T-A 7803766-T-A Y16679 YY*
21516760-T-A 19354874-T-A BY133536 YY*
21594210-C-T 19432324-C-T Z26404 YY*
21638517-G-T 19476631-G-T BY134354 YY*
21649234-C-T 19487348-C-T BY134456 YY*
21687596-C-CA 19525710-C-CA 9×A*
21755782-T-A 19593896-T-A BY135221 YY*
22287192-T-C 20125306-T-C BY2817 DYZ19 *
21974236-A-T 19812350-A-T Z26407 YY*
22141028-G-GT 19979142-G-GT *
7676292-A-C 7808251-A-C Y16668 YY*
9420892-G-CCT 9583283-G-CCT *
9124676-GAC-G *
22155834-C-T 19993948-C-T Y16672 YY*
21130059-A-G 18968173-A-G PF3797 YY*
7676449-G-T 7808408-G-T Y16662 YY*
7682114-G-C 7814073-G-C BY421 YY*
15711521-G-A 13599641-G-A Y16426 YY*
22269985-T-C 20108099-T-C FGC18126 DYZ19 *
22272402-C-G 20110516-C-G BY40562 DYZ19 *
21155653-C-T 18993767-C-T Y1903 FGC2414 Y*
24444622-T-C 22298475-T-C Y*
21067903-C-T 18906017-C-T PF3794 YY*
8070532-A-T 8202491-A-T YY*
8416058-A-C 8548017-A-C YY*
8411202-G-A 8543161-G-A YY*
8685083-G-A 8817042-G-A YY*
8194310-A-C 8326269-A-C V1699 YY*
8696594-A-G 8828553-A-G YY*
8149348-G-A 8281307-G-A YY*
8845380-T-C 8977339-T-C YY*
8619538-A-G 8751497-A-G PF303 br1 YY*
9065725-G-GCTAACA 9228116-G-GCTAACA *
9098922-T-C 9261313-T-C Y*
9171956-A-T 9334347-A-T Y*
9841700-C-G 10004091-C-G YY*
14117810-T-C 11997104-T-C YY*
15480547-G-C 13368667-G-C V2974 YY*
8633545-C-T 8765504-C-T YY*
8516929-A-G 8648888-A-G YY*
15944828-C-G 13832948-C-G YY*
7549445-A-T 7681404-A-T V1195 YY*
2817429-G-C 2949388-G-C CTS216 YY*
6630931-G-A 6762890-G-A YY*
6670461-G-T 6802420-G-T YY*
9084870-T-G 9247261-T-G YSC0000082 Y*
6931040-G-C 7062999-G-C CTS655 YY*
7459474-A-G 7591433-A-G CTS1518 IR1_L *
7628900-A-G 7760859-A-G YY*
8676330-A-G 8808289-A-G YY*
7714986-G-T 7846945-G-T YY*
7848043-G-C 7980002-G-C YSC0000279 YY*
8257661-G-A 8389620-G-A YY*
8326618-T-C 8458577-T-C V1809 YY*
8334875-G-A 8466834-G-A YY*
8881927-G-GGT 9013886-G-GGT *
15648415-T-C 13536535-T-C CTS4437 YY*
8050994-C-G 8182953-C-G YY*
18720028-T-C 16608148-T-C YY*
22094491-T-C 19932605-T-C YY*
17844018-C-T 15732138-C-T YY*
21570974-A-G 19409088-A-G YY*
7220727-G-A 7352686-G-A YY*
21811108-T-G 19649222-T-G YY*
21867787-A-G 19705901-A-G YY*
22003770-A-G 19841884-A-G YSC0000227 F597 YY*
22808370-T-C 20646484-T-C CTS10859 YY*
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13314117-G-A 11158441-G-A BY16360 ***
13971-A-T FGC77139 ***
22228664-G-A 20066778-G-A BY47870 DYZ19 ***
10661396-C-A ***
10677327-A-G ***
7139501-GATATT-G 7271460-GATATT-G ***
13489307-C-T 11333631-C-T BY86239 ***
18267437-T-C 16155557-T-C Z26396 ***
14215159-C-CA 12094453-C-CA 9×A***
14519678-C-T 12407879-C-T PF3902 ***
7098856-C-A 7230815-C-A ***
10777958-T-A ***
10627626-T-G BY49429 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: 396187966410078695247759716
Used in age calculations966410078695247759716
Counts of SNPs365343
Variant counts last updated 2020-03-31 02:43:53.

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