Lindsey
FTDNA: B1114, BigY2: B1114Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA B1114 | BigY2 B1114 |
---|---|---|---|---|---|---|---|---|---|
22312962-C-G | 20151076-C-G | DYZ19 | A* | ||||||
6943751-T-G | 7075710-T-G | BY62434 | Y | Y | + | + | |||
7352281-T-A | 7484240-T-A | BY64703 | Y | Y | + | + | |||
8782663-A-G | 8914622-A-G | BY75867 | Y | Y | + | + | |||
13974413-T-G | 11853707-T-G | BY92034 | Y | ** | + | ||||
15537916-T-C | 13426036-T-C | BY102347 | Y | Y | + | + | |||
17064651-A-G | 14952771-A-G | BY112101 | Y | Y | + | + | |||
17847941-C-T | 15736061-C-T | BY156721 | Y | Y | + | + | |||
21844904-C-A | 19683018-C-A | BY135886 | Y | Y | + | + | |||
21844906-T-G | 19683020-T-G | BY135887 | Y | Y | + | + | |||
21844908-T-G | 19683022-T-G | BY135888 | Y | Y | + | + | |||
21896727-T-C | 19734841-T-C | BY136294 | Y | Y | + | + | |||
22300594-T-C | 20138708-T-C | BY25392 | DYZ19 | ** | |||||
20700644-CCA-C | 18538758-CCA-C | P4_Prx | 8×CA | ** | |||||
4113115-G-A | 4245074-G-A | PF4388 | ** | ||||||
13308678-C-A | 11153002-C-A | ** | ** | ||||||
28688230-C-A | 26542083-C-A | ** | ** | ||||||
8901076-C-CATAT | 9033035-C-CATAT | 15×AT | ** | ||||||
13461009-C-A | 11305333-C-A | ** | |||||||
22420454-T-C | 20258568-T-C | DYZ19 | ** | ||||||
7135408-TG-T | 7267367-TG-T | ** | |||||||
16598667-T-A | 14486787-T-A | ** | |||||||
28805866-G-T | 26659719-G-T | ** | |||||||
13612057-A-T | 11456381-A-T | ** | |||||||
14025822-AAAAG-A | 11905116-AAAAG-A | 5×AAAG | ** | ||||||
28504738-C-T | 26358591-C-T | F26722 | ** | ||||||
28803984-G-T | 26657837-G-T | ZS1275 | ** | ||||||
5937242-CTA-C | 6069201-CTA-C | 18×TA | ** | ||||||
14517673-C-A | 12405874-C-A | ** | |||||||
21381604-C-A | 19219718-C-A | FT97083 | ** | ||||||
27842368-G-GA | 25696221-G-GA | P1_Y2 | 9×A | ** | |||||
19081517-TTTA-T | 16969637-TTTA-T | 12×TTA | ** | ||||||
13461011-A-T | 11305335-A-T | ** | |||||||
22300619-T-G | 20138733-T-G | DYZ19 | ** | ||||||
22300601-G-T | 20138715-G-T | DYZ19 | ** | ||||||
7158028-C-A | 7289987-C-A | ** | |||||||
17455929-C-A | 15344049-C-A | ** | |||||||
4216402-G-A | 4348361-G-A | FGC66931 | ** | ||||||
21132681-G-T | 18970795-G-T | 18×T | ** | ||||||
7123479-C-G | 7255438-C-G | ** | |||||||
8854214-C-A | 8986173-C-A | ** | |||||||
14727247-C-A | 12615315-C-A | ** | |||||||
23255319-C-A | 21093433-C-A | ** | |||||||
19075416-C-A | 16963536-C-A | ** | |||||||
10780643-T-C | ** | ||||||||
15894414-T-C | 13782534-T-C | ** | |||||||
19146598-G-T | 17034718-G-T | ** | |||||||
21488775-C-A | 19326889-C-A | ** | |||||||
10807925-C-A | ** | ||||||||
4177991-C-A | 4309950-C-A | ** | |||||||
17370896-C-A | 15259016-C-A | ** | |||||||
10950469-A-G | ** | ||||||||
11025022-T-G | ** | ||||||||
10994115-C-G | ** | ||||||||
17946919-G-GTT | 15835039-G-GTT | 24×T | ** | ||||||
10653398-G-T | ** | ||||||||
11004768-A-C | ** | ||||||||
11004773-G-C | ** | ||||||||
24447070-A-AAG | 22300923-A-AAG | 9×AG | ** | ||||||
20637584-T-TAGATAG | 18475698-T-TAGATAG | P4_Prx | ** | ||||||
11003341-C-T | ** | ||||||||
11003396-C-T | ** | ||||||||
17991074-TATTA-T | 15879194-TATTA-T | P7_Prx | ** | ||||||
19146617-G-C | 17034737-G-C | ** | |||||||
22420461-A-T | 20258575-A-T | DYZ19 | ** | ||||||
22420462-G-T | 20258576-G-T | DYZ19 | ** | ||||||
22420475-G-A | 20258589-G-A | DYZ19 | ** | ||||||
15364059-CAAAAA-C | 13252179-CAAAAA-C | 21×A | ** | ||||||
10976939-G-A | ** | ||||||||
24432863-G-A | 22286716-G-A | ** | |||||||
28558108-C-A | 26411961-C-A | ** | |||||||
19113754-C-A | 17001874-C-A | ** | |||||||
10948230-G-T | ** | ||||||||
6698968-C-T | 6830927-C-T | ** | |||||||
21774753-T-C | ** | ||||||||
21774764-G-A | ** | ||||||||
28500037-C-A | 26353890-C-A | ** | |||||||
2719051-AT-A | 2851010-AT-A | ** | |||||||
4957684-C-A | 5089643-C-A | ** | |||||||
14292750-C-A | 12172044-C-A | ** | |||||||
11022066-T-A | ** | ||||||||
11022066-T-TA | ** | ||||||||
22436808-G-A | 20274922-G-A | DYZ19 | ** | ||||||
22316198-C-A | 20154312-C-A | DYZ19 | ** | ||||||
2719045-C-T | 2851004-C-T | ** | |||||||
6267713-A-G | 6399672-A-G | IR3_Dst | ** | ||||||
23144339-C-A | 20982453-C-A | ** | |||||||
19302746-G-T | 17190866-G-T | ** | |||||||
7670728-C-A | 7802687-C-A | ** | |||||||
58980991-C-G | 56834844-C-G | ** | |||||||
56834860-ACT-A | ** | ||||||||
3275444-G-T | 3407403-G-T | ** | |||||||
20700704-G-A | 18538818-G-A | P4_Prx | ** | ||||||
21774785-G-GA | ** | ||||||||
2719022-C-T | 2850981-C-T | ** | |||||||
7162442-C-A | 7294401-C-A | ** | |||||||
8058452-CTTTTT-C | 8190411-CTTTTT-C | 15×T | ** | ||||||
17321181-A-G | 15209301-A-G | ** | |||||||
7337043-C-A | 7469002-C-A | ** | |||||||
14474783-C-A | 12354052-C-A | ** | |||||||
10987027-A-G | ** | ||||||||
15685105-G-T | 13573225-G-T | ** | |||||||
14445001-C-A | 12324274-C-A | ** | |||||||
22113169-C-A | 19951283-C-A | ** | |||||||
21774681-T-G | ** | ||||||||
7564264-C-A | 7696223-C-A | ** | |||||||
7200551-T-C | 7332510-T-C | ** | |||||||
24405149-C-A | 22259002-C-A | ** | |||||||
19377184-AAAAG-A | 17265304-AAAAG-A | 5×AAAG | ** | ||||||
17624511-A-C | 15512631-A-C | ** | |||||||
12450522-CTTTT-C | 41×T | ** | |||||||
27966857-GTATATATA-G | 25820710-GTATATATA-G | P1_Y2 | 21×TA | ** | |||||
3347543-C-A | 3479502-C-A | ** | |||||||
26153977-AG-A | 24007830-AG-A | P1_Y1 | ** | ||||||
6284850-A-G | 6416809-A-G | IR3_Dst | ** | ||||||
27861862-G-T | 25715715-G-T | P1_Y2 | ** | ||||||
8774632-C-A | 8906591-C-A | ** | |||||||
13974884-G-T | 11854178-G-T | FTB3019 | ** | ||||||
14431160-C-A | 12310433-C-A | ** | |||||||
10964886-G-A | ** | ||||||||
2718946-G-A | 2850905-G-A | ** | |||||||
2718985-C-A | 2850944-C-A | ** | |||||||
19544533-C-A | 17432653-C-A | FT79833 | ** | ||||||
23438868-C-A | 21276982-C-A | ** | |||||||
9030214-G-T | 9192605-G-T | ** | |||||||
2719029-C-T | 2850988-C-T | ** | |||||||
17461964-C-A | 15350084-C-A | ** | |||||||
10936309-T-C | ** | ||||||||
21402221-A-T | 19240335-A-T | ** | |||||||
15157494-C-A | 13045581-C-A | ** | |||||||
23137481-C-A | 20975595-C-A | ** | |||||||
2718988-C-G | 2850947-C-G | ** | |||||||
15403520-C-A | 13291640-C-A | ** | |||||||
11665950-C-A | ** | ||||||||
10693029-G-T | ** | ||||||||
28793784-G-C | 26647637-G-C | ** | |||||||
16007164-T-G | 13895284-T-G | ** | |||||||
15576809-A-T | 13464929-A-T | ** | |||||||
15576815-A-G | 13464935-A-G | ** | |||||||
16319582-C-A | 14207702-C-A | ** | |||||||
10664947-G-T | ** | ||||||||
14517593-C-A | 12405794-C-A | ** | |||||||
7990823-C-A | 8122782-C-A | ** | |||||||
6646781-C-A | 6778740-C-A | ** | |||||||
3409693-C-A | 3541652-C-A | ** | |||||||
15558098-C-A | 13446218-C-A | ** | |||||||
6403580-G-C | 6535539-G-C | ** | |||||||
20602135-T-TC | 18440249-T-TC | P5_Dst | ** | ||||||
10952279-C-A | ** | ||||||||
14446678-C-A | 12325951-C-A | ** | |||||||
7433911-C-A | 7565870-C-A | ** | |||||||
10972061-G-A | ** | ||||||||
2719075-G-A | 2851034-G-A | ** | |||||||
15576857-C-A | 13464977-C-A | ** | |||||||
4016585-C-A | 4148544-C-A | ** | |||||||
15115608-CT-C | 13003695-CT-C | 8×T | ** | ||||||
10759191-C-CAACCA | ** | ||||||||
5426642-GA-G | 5558601-GA-G | 9×A | ** | ||||||
8288772-A-C | 8420731-A-C | ** | |||||||
10921096-C-A | ** | ||||||||
7123520-C-A | 7255479-C-A | ** | |||||||
13934998-C-A | 11814292-C-A | ** | |||||||
13487704-G-T | 11332028-G-T | ** | |||||||
2948782-C-A | 3080741-C-A | ** | |||||||
14158005-C-A | 12037299-C-A | ** | |||||||
15397805-C-A | 13285925-C-A | ** | |||||||
6756726-C-A | 6888685-C-A | ** | |||||||
19300427-C-A | 17188547-C-A | ** | |||||||
56822400-G-T | ** | ||||||||
14279800-C-A | 12159094-C-A | ** | |||||||
5999452-C-A | 6131411-C-A | ** | |||||||
15733852-C-A | 13621972-C-A | ** | |||||||
9057551-ATT-A | ** | ||||||||
28714963-C-A | 26568816-C-A | ** | |||||||
7096671-A-T | 7228630-A-T | ** | |||||||
16914373-C-A | 14802493-C-A | ** | |||||||
18577109-C-A | 16465229-C-A | ** | |||||||
15769166-C-A | 13657286-C-A | ** | |||||||
16829117-CA-C | 14717237-CA-C | ** | |||||||
16829133-T-G | 14717253-T-G | ** | |||||||
16829135-A-G | 14717255-A-G | ** | |||||||
10887469-A-T | ** | ||||||||
11665859-C-A | ** | ||||||||
17928699-C-A | 15816819-C-A | ** | |||||||
3274310-C-A | 3406269-C-A | ** | |||||||
3875965-C-A | 4007924-C-A | ** | |||||||
14527155-C-A | 12415356-C-A | ** | |||||||
10032226-C-A | 10194617-C-A | ** | |||||||
21127416-C-A | 18965530-C-A | ** | |||||||
4527394-C-A | 4659353-C-A | ** | |||||||
17479079-C-A | 15367199-C-A | ** | |||||||
14568194-C-A | 12456394-C-A | ** | |||||||
14285792-C-A | 12165086-C-A | A18610 | ** | ||||||
3649262-C-A | 3781221-C-A | ** | |||||||
18059634-C-A | 15947754-C-A | ** | |||||||
5447048-C-A | 5579007-C-A | ** | |||||||
10945968-T-C | ** | ||||||||
3346194-C-A | 3478153-C-A | ** | |||||||
16070725-C-A | 13958845-C-A | ** | |||||||
10955225-C-A | ** | ||||||||
13623541-C-A | 11467865-C-A | ** | |||||||
24607226-T-TAG | 22461079-T-TAG | P3_t2 | ** | ||||||
10999669-C-A | ** | ||||||||
27603671-C-A | 25457524-C-A | P1_Y2 | ** | ||||||
4899684-C-A | 5031643-C-A | ** | |||||||
6001374-C-A | 6133333-C-A | ** | |||||||
4325655-C-A | 4457614-C-A | ** | |||||||
14452690-G-T | 12331963-G-T | ** | |||||||
20495923-T-TA | 18334037-T-TA | P5_Dst | ** | ||||||
26495836-G-A | 24349689-G-A | P1_Y1 | ** | ||||||
26495837-A-G | 24349690-A-G | P1_Y1 | ** | ||||||
26495849-T-A | 24349702-T-A | P1_Y1 | ** | ||||||
7141999-C-A | 7273958-C-A | ** | |||||||
6976423-C-A | 7108382-C-A | ** | |||||||
13940697-CA-C | 11819991-CA-C | ** | |||||||
10987030-T-TCA | ** | ||||||||
9329832-C-A | 9492223-C-A | ** | |||||||
14560752-A-C | 12448953-A-C | ** | |||||||
14472802-C-A | 12352071-C-A | ** | |||||||
10783829-C-A | ** | ||||||||
17217151-C-A | 15105271-C-A | ** | |||||||
2669929-C-A | 2801888-C-A | ** | |||||||
2684267-G-A | 2816226-G-A | ** | |||||||
2699535-C-A | 2831494-C-A | ** | |||||||
2718951-C-T | 2850910-C-T | ** | |||||||
2718954-G-A | 2850913-G-A | ** | |||||||
2718960-C-T | 2850919-C-T | ** | |||||||
2718963-C-T | 2850922-C-T | ** | |||||||
2718975-C-T | 2850934-C-T | ** | |||||||
2719018-G-A | 2850977-G-A | ** | |||||||
2719043-C-A | 2851002-C-A | ** | |||||||
2719061-T-A | 2851020-T-A | ** | |||||||
2719068-T-C | 2851027-T-C | ** | |||||||
2774954-A-G | 2906913-A-G | ** | |||||||
2774997-C-A | 2906956-C-A | ** | |||||||
2791636-T-C | 2923595-T-C | ** | |||||||
2795648-C-A | 2927607-C-A | ** | |||||||
2855459-G-T | 2987418-G-T | ** | |||||||
2895287-A-G | 3027246-A-G | ** | |||||||
2900660-C-A | 3032619-C-A | ** | |||||||
2948197-T-A | 3080156-T-A | ** | |||||||
2948379-T-A | 3080338-T-A | ** | |||||||
2986806-G-T | 3118765-G-T | ** | |||||||
3048184-C-A | 3180143-C-A | ** | |||||||
3092048-A-G | 3224007-A-G | ** | |||||||
3155571-T-G | 3287530-T-G | ** | |||||||
3284112-C-G | 3416071-C-G | ** | |||||||
3284163-C-T | 3416122-C-T | ** | |||||||
3410414-A-C | 3542373-A-C | ** | |||||||
3437042-G-T | 3569001-G-T | ** | |||||||
3471008-C-T | 3602967-C-T | ** | |||||||
3494934-A-T | 3626893-A-T | ** | |||||||
3560240-T-C | 3692199-T-C | ** | |||||||
3600234-C-A | 3732193-C-A | ** | |||||||
3603423-C-T | 3735382-C-T | ** | |||||||
3610174-C-A | 3742133-C-A | ** | |||||||
3649296-C-T | 3781255-C-T | ** | |||||||
3672931-T-C | 3804890-T-C | ** | |||||||
3681417-A-C | 3813376-A-C | ** | |||||||
3697014-T-A | 3828973-T-A | ** | |||||||
3790943-C-T | 3922902-C-T | ** | |||||||
3831513-G-C | 3963472-G-C | ** | |||||||
3850332-C-A | 3982291-C-A | ** | |||||||
3939311-T-A | 4071270-T-A | ** | |||||||
3939337-T-A | 4071296-T-A | ** | |||||||
3965787-A-C | 4097746-A-C | ** | |||||||
4141208-C-G | 4273167-C-G | ** | |||||||
4216395-G-A | 4348354-G-A | ** | |||||||
4216400-T-C | 4348359-T-C | ** | |||||||
4216405-G-A | 4348364-G-A | ** | |||||||
4216407-C-A | 4348366-C-A | ** | |||||||
4216410-T-G | 4348369-T-G | ** | |||||||
4216423-A-C | 4348382-A-C | ** | |||||||
4236040-C-T | 4367999-C-T | ** | |||||||
4236062-C-T | 4368021-C-T | ** | |||||||
4345222-C-A | 4477181-C-A | ** | |||||||
4438706-T-C | 4570665-T-C | ** | |||||||
4663995-T-C | 4795954-T-C | ** | |||||||
4664371-C-A | 4796330-C-A | ** | |||||||
4755917-C-A | 4887876-C-A | ** | |||||||
4891275-G-T | 5023234-G-T | ** | |||||||
4891527-G-T | 5023486-G-T | ** | |||||||
4956836-T-C | 5088795-T-C | ** | |||||||
4957738-AT-A | 5089697-AT-A | ** | |||||||
5081124-A-C | 5213083-A-C | ** | |||||||
5100221-G-T | 5232180-G-T | ** | |||||||
5154496-A-T | 5286455-A-T | ** | |||||||
5154624-A-G | 5286583-A-G | ** | |||||||
5190542-A-G | 5322501-A-G | ** | |||||||
5190648-C-A | 5322607-C-A | ** | |||||||
5200604-G-T | 5332563-G-T | ** | |||||||
5216289-C-A | 5348248-C-A | ** | |||||||
5316851-A-C | 5448810-A-C | ** | |||||||
5345110-G-T | 5477069-G-T | ** | |||||||
5449963-A-G | 5581922-A-G | ** | |||||||
5562959-A-T | 5694918-A-T | ** | |||||||
5580917-A-G | 5712876-A-G | ** | |||||||
5625501-G-A | 5757460-G-A | ** | |||||||
5650677-A-G | 5782636-A-G | ** | |||||||
5728214-C-A | 5860173-C-A | ** | |||||||
5864927-A-G | 5996886-A-G | ** | |||||||
5937356-A-C | 6069315-A-C | ** | |||||||
5953023-T-G | 6084982-T-G | ** | |||||||
5953058-C-G | 6085017-C-G | ** | |||||||
5953079-A-G | 6085038-A-G | ** | |||||||
6080732-G-T | 6212691-G-T | ** | |||||||
6226188-T-C | 6358147-T-C | IR3_Dst | ** | ||||||
6284450-T-A | 6416409-T-A | IR3_Dst | ** | ||||||
6347636-C-T | 6479595-C-T | ** | |||||||
6500856-G-T | 6632815-G-T | ** | |||||||
6535312-T-G | 6667271-T-G | ** | |||||||
6646642-A-T | 6778601-A-T | ** | |||||||
6646689-T-G | 6778648-T-G | ** | |||||||
6646729-T-G | 6778688-T-G | ** | |||||||
6648099-GTTGTGA-G | 6780058-GTTGTGA-G | ** | |||||||
6791157-C-A | 6923116-C-A | ** | |||||||
6828482-T-C | 6960441-T-C | ** | |||||||
6917177-T-C | 7049136-T-C | ** | |||||||
6977451-T-C | 7109410-T-C | ** | |||||||
6977487-T-G | 7109446-T-G | ** | |||||||
7012424-T-C | 7144383-T-C | ** | |||||||
7081276-T-C | 7213235-T-C | ** | |||||||
7095214-T-A | 7227173-T-A | ** | |||||||
7107282-T-C | 7239241-T-C | ** | |||||||
7110956-T-G | 7242915-T-G | ** | |||||||
7154766-C-A | 7286725-C-A | ** | |||||||
7183807-C-A | 7315766-C-A | ** | |||||||
7277048-GAA-G | 7409007-GAA-G | 12×A | ** | ||||||
7309219-A-T | 7441178-A-T | ** | |||||||
7337061-T-C | 7469020-T-C | ** | |||||||
7337108-T-C | 7469067-T-C | ** | |||||||
7340283-T-C | 7472242-T-C | ** | |||||||
7347313-C-A | 7479272-C-A | ** | |||||||
7373474-T-C | 7505433-T-C | ** | |||||||
7390195-A-C | 7522154-A-C | ** | |||||||
7433483-T-C | 7565442-T-C | ** | |||||||
7463986-C-A | 7595945-C-A | IR1_L | ** | ||||||
7463993-G-T | 7595952-G-T | IR1_L | ** | ||||||
7621835-C-A | 7753794-C-A | ** | |||||||
7708830-A-G | 7840789-A-G | ** | |||||||
7724236-C-A | 7856195-C-A | ** | |||||||
7821077-C-T | 7953036-C-T | ** | |||||||
7861283-A-G | 7993242-A-G | ** | |||||||
7866154-A-G | 7998113-A-G | ** | |||||||
8052495-T-C | 8184454-T-C | Z35805 | ** | ||||||
8075987-A-T | 8207946-A-T | ** | |||||||
8076003-T-A | 8207962-T-A | ** | |||||||
8076030-G-A | 8207989-G-A | ** | |||||||
8697617-C-G | 8829576-C-G | ** | |||||||
8982994-A-C | 9145385-A-C | ** | |||||||
9144374-C-A | 9306765-C-A | ** | |||||||
9147033-G-T | 9309424-G-T | ** | |||||||
9386091-T-C | 9548482-T-C | ** | |||||||
9437276-C-A | 9599667-C-A | ** | |||||||
9497719-G-C | 9660110-G-C | ** | |||||||
9497769-A-C | 9660160-A-C | ** | |||||||
9619607-CA-C | 9781998-CA-C | IR3_Prx | ** | ||||||
9811113-A-G | 9973504-A-G | ** | |||||||
9811148-C-G | 9973539-C-G | ** | |||||||
9948846-A-G | 10111237-A-G | ** | |||||||
10018253-C-A | 10180644-C-A | ** | |||||||
10659438-T-A | ** | ||||||||
10692898-A-G | ** | ||||||||
10747136-A-C | ** | ||||||||
10760751-T-A | ** | ||||||||
10775448-C-A | ** | ||||||||
10786017-C-A | ** | ||||||||
10787530-A-G | ** | ||||||||
10795639-C-A | ** | ||||||||
10796416-C-G | ** | ||||||||
10797804-T-C | ** | ||||||||
10813146-C-A | ** | ||||||||
10822810-C-A | ** | ||||||||
10826918-C-A | ** | ||||||||
10857219-C-A | ** | ||||||||
10860875-C-A | ** | ||||||||
10861080-T-C | ** | ||||||||
10874077-C-A | ** | ||||||||
10874285-C-A | ** | ||||||||
10879931-C-T | ** | ||||||||
10887480-T-C | ** | ||||||||
10889610-A-G | ** | ||||||||
10892757-T-C | ** | ||||||||
10894827-C-A | ** | ||||||||
10896438-C-A | ** | ||||||||
10912288-C-A | ** | ||||||||
10917951-C-A | ** | ||||||||
10924202-C-A | ** | ||||||||
10926476-C-T | ** | ||||||||
10936299-T-A | ** | ||||||||
10938437-C-A | ** | ||||||||
10952584-G-T | ** | ||||||||
10960873-CCATTT-C | ** | ||||||||
10970979-G-T | ** | ||||||||
10972031-C-T | ** | ||||||||
10972065-T-C | ** | ||||||||
10976045-T-G | ** | ||||||||
10980179-C-A | ** | ||||||||
10992596-C-A | ** | ||||||||
10998896-C-T | ** | ||||||||
11006392-T-C | ** | ||||||||
11008024-T-G | ** | ||||||||
11018529-C-A | ** | ||||||||
11022079-T-C | ** | ||||||||
11031425-C-T | ** | ||||||||
11033042-C-A | ** | ||||||||
13199199-A-G | 11043523-A-G | ** | |||||||
13199215-C-G | 11043539-C-G | ** | |||||||
13236031-C-A | 11080355-C-A | ** | |||||||
13255516-C-T | 11099840-C-T | ** | |||||||
13295206-C-T | 11139530-C-T | ** | |||||||
13496311-G-T | 11340635-G-T | ** | |||||||
13499700-C-A | 11344024-C-A | ** | |||||||
13553386-A-T | 11397710-A-T | ** | |||||||
13568665-G-T | 11412989-G-T | ** | |||||||
13571071-G-T | 11415395-G-T | ** | |||||||
13881183-A-C | 11760477-A-C | ** | |||||||
13886836-C-A | 11766130-C-A | FT69616 | ** | ||||||
13909149-CA-C | 11788443-CA-C | ** | |||||||
13940692-A-G | 11819986-A-G | ** | |||||||
13940696-A-C | 11819990-A-C | ** | |||||||
13947521-GAA-G | 11826815-GAA-G | 13×A | ** | ||||||
14007354-G-C | 11886648-G-C | ** | |||||||
14022967-C-A | 11902261-C-A | ** | |||||||
14053080-A-C | 11932374-A-C | ** | |||||||
14055653-G-C | 11934947-G-C | ** | |||||||
14055689-A-T | 11934983-A-T | ** | |||||||
14107063-G-C | 11986357-G-C | ** | |||||||
14109411-T-C | 11988705-T-C | ** | |||||||
14146914-C-A | 12026208-C-A | ** | |||||||
14149373-G-C | 12028667-G-C | ** | |||||||
14149400-A-T | 12028694-A-T | ** | |||||||
14212107-G-C | 12091401-G-C | ** | |||||||
14300105-G-A | 12179399-G-A | ** | |||||||
14300109-A-C | 12179403-A-C | ** | |||||||
14352659-C-A | 12231954-C-A | ** | |||||||
14456753-G-T | 12336026-G-T | ** | |||||||
14458179-C-A | 12337452-C-A | ** | |||||||
14540612-G-T | 12428813-G-T | ** | |||||||
14570838-G-A | 12459038-G-A | F19071 | ** | ||||||
14607537-G-T | 12495739-G-T | ** | |||||||
14724536-C-T | 12612604-C-T | ** | |||||||
14757332-T-A | 12645401-T-A | ** | |||||||
14802895-C-G | 12690966-C-G | ** | |||||||
14815630-T-C | 12703701-T-C | ** | |||||||
15218841-G-T | 13106927-G-T | ** | |||||||
15218873-G-A | 13106959-G-A | ** | |||||||
15364549-G-A | 13252669-G-A | ** | |||||||
15420130-C-T | 13308250-C-T | ** | |||||||
15495318-C-A | 13383438-C-A | ** | |||||||
15576810-T-G | 13464930-T-G | ** | |||||||
15576818-C-T | 13464938-C-T | ** | |||||||
15576837-A-G | 13464957-A-G | ** | |||||||
15655509-A-T | 13543629-A-T | ** | |||||||
15686662-C-T | 13574782-C-T | ** | |||||||
15785836-A-C | 13673956-A-C | ** | |||||||
15785908-T-C | 13674028-T-C | ** | |||||||
15894408-C-G | 13782528-C-G | ** | |||||||
15922525-G-C | 13810645-G-C | ** | |||||||
15927869-T-C | 13815989-T-C | ** | |||||||
15963612-C-A | 13851732-C-A | ** | |||||||
16003787-A-G | 13891907-A-G | ** | |||||||
16070756-C-T | 13958876-C-T | ** | |||||||
16091203-C-A | 13979323-C-A | ** | |||||||
16317207-C-A | 14205327-C-A | ** | |||||||
16394497-A-C | 14282617-A-C | ** | |||||||
16429882-C-A | 14318002-C-A | FT243159 | ** | ||||||
16506793-T-A | 14394913-T-A | ** | |||||||
16575046-C-A | 14463166-C-A | ** | |||||||
16619795-T-C | 14507915-T-C | ** | |||||||
16738262-C-A | 14626382-C-A | ** | |||||||
16829112-A-C | 14717232-A-C | ** | |||||||
16829128-G-A | 14717248-G-A | ** | |||||||
16829142-A-T | 14717262-A-T | ** | |||||||
16886706-C-T | 14774826-C-T | ** | |||||||
16932183-CT-C | 14820303-CT-C | ** | |||||||
17229252-A-G | 15117372-A-G | ** | |||||||
17246771-C-A | 15134891-C-A | ** | |||||||
17269739-G-T | 15157859-G-T | ** | |||||||
17297287-A-T | 15185407-A-T | ** | |||||||
17306494-C-A | 15194614-C-A | ** | |||||||
17491999-C-A | 15380119-C-A | ** | |||||||
17549529-A-G | 15437649-A-G | ** | |||||||
17580814-A-T | 15468934-A-T | ** | |||||||
17722635-C-A | 15610755-C-A | ** | |||||||
17798893-T-G | 15687013-T-G | ** | |||||||
17997643-G-T | 15885763-G-T | P7_Gap | ** | ||||||
18093844-T-C | 15981964-T-C | ** | |||||||
18186481-G-T | 16074601-G-T | ** | |||||||
18195159-T-TG | 16083279-T-TG | ** | |||||||
18577133-T-C | 16465253-T-C | ** | |||||||
18577167-C-T | 16465287-C-T | ** | |||||||
18630782-T-G | 16518902-T-G | ** | |||||||
18848142-A-G | 16736262-A-G | ** | |||||||
18987145-A-T | 16875265-A-T | ** | |||||||
18988125-A-G | 16876245-A-G | ** | |||||||
19052283-C-A | 16940403-C-A | ** | |||||||
19146615-T-C | 17034735-T-C | ** | |||||||
19296977-C-A | 17185097-C-A | ** | |||||||
19299385-C-A | 17187505-C-A | ** | |||||||
19329067-G-T | 17217187-G-T | ** | |||||||
19351638-G-T | 17239758-G-T | ** | |||||||
19398200-C-A | 17286320-C-A | ** | |||||||
19479367-A-G | 17367487-A-G | ** | |||||||
19563236-T-G | 17451356-T-G | ** | |||||||
19646574-A-G | 17534694-A-G | P5_Prx | ** | ||||||
19689642-C-G | 17577762-C-G | P5_Prx | ** | ||||||
19842066-G-T | 17730186-G-T | P5_Prx | ** | ||||||
19884421-A-G | 17772541-A-G | P5_Prx | ** | ||||||
19884436-A-G | 17772556-A-G | P5_Prx | ** | ||||||
19929768-A-C | 17817888-A-C | P5_Prx | ** | ||||||
20078685-C-G | 17966805-C-G | P5_Dst | ** | ||||||
20602162-C-A | 18440276-C-A | P5_Dst | ** | ||||||
20730228-G-C | 18568342-G-C | P4_Prx | ** | ||||||
20761028-A-T | 18599142-A-T | P4_Prx | ** | ||||||
20802662-A-C | 18640776-A-C | P4_Gap | ** | ||||||
21248180-T-C | 19086294-T-C | ** | |||||||
21281327-A-T | 19119441-A-T | ** | |||||||
21375689-T-C | 19213803-T-C | ** | |||||||
21467955-C-A | 19306069-C-A | ** | |||||||
21512275-C-A | 19350389-C-A | ** | |||||||
21540680-C-A | 19378794-C-A | ** | |||||||
21681644-C-A | 19519758-C-A | ** | |||||||
21738675-G-T | 19576789-G-T | ** | |||||||
21836278-C-T | 19674392-C-T | ** | |||||||
21922117-C-A | 19760231-C-A | ** | |||||||
21963818-A-G | 19801932-A-G | ** | |||||||
22056418-C-A | 19894532-C-A | ** | |||||||
22075951-A-G | 19914065-A-G | ** | |||||||
22076023-T-A | 19914137-T-A | ** | |||||||
22132388-G-C | 19970502-G-C | ** | |||||||
22240706-A-G | 20078820-A-G | DYZ19 | ** | ||||||
22240961-C-CG | 20079075-C-CG | DYZ19 | ** | ||||||
22263805-G-C | 20101919-G-C | DYZ19 | ** | ||||||
22300578-G-T | 20138692-G-T | DYZ19 | ** | ||||||
22300584-G-C | 20138698-G-C | DYZ19 | ** | ||||||
22300596-TA-T | 20138710-TA-T | DYZ19 | ** | ||||||
22300603-G-T | 20138717-G-T | DYZ19 | ** | ||||||
22300631-G-A | 20138745-G-A | DYZ19 | ** | ||||||
22300633-G-A | 20138747-G-A | DYZ19 | ** | ||||||
22300655-C-T | 20138769-C-T | DYZ19 | ** | ||||||
22429134-T-A | 20267248-T-A | DYZ19 | ** | ||||||
22436832-C-T | 20274946-C-T | DYZ19 | ** | ||||||
22613970-G-C | 20452084-G-C | ** | |||||||
22855310-A-G | 20693424-A-G | ** | |||||||
22956225-T-A | 20794339-T-A | ** | |||||||
23202459-T-A | 21040573-T-A | ** | |||||||
23205900-A-G | 21044014-A-G | ** | |||||||
23285289-T-C | 21123403-T-C | ** | |||||||
23285301-G-C | 21123415-G-C | ** | |||||||
23505145-C-A | 21343259-C-A | ** | |||||||
23625529-C-A | 21463643-C-A | ** | |||||||
23819170-C-A | 21657284-C-A | ** | |||||||
23953353-C-A | 21807206-C-A | ** | |||||||
24342140-CAAAAAATTCTT-C | 22195993-CAAAAAATTCTT-C | P3_t1 | ** | ||||||
24407920-G-T | 22261773-G-T | ** | |||||||
24447213-G-T | 22301066-G-T | ** | |||||||
25617221-A-G | 23471074-A-G | P1_gr1 | ** | ||||||
25892197-ATATAT-A | 23746050-ATATAT-A | P1_Y1 | ** | ||||||
25967685-G-GTC | 23821538-G-GTC | P1_Y1 | 13×T | ** | |||||
26113152-G-T | 23967005-G-T | P1_Y1 | ** | ||||||
26113241-T-A | 23967094-T-A | P1_Y1 | ** | ||||||
26834872-G-A | 24688725-G-A | P1_g2 | ** | ||||||
28461933-C-T | 26315786-C-T | ** | |||||||
28497255-T-G | 26351108-T-G | ** | |||||||
28511103-C-A | 26364956-C-A | ** | |||||||
28529334-T-C | 26383187-T-C | ** | |||||||
28597337-G-C | 26451190-G-C | ** | |||||||
28627412-C-A | 26481265-C-A | ** | |||||||
28645296-A-T | 26499149-A-T | ** | |||||||
28711567-T-A | 26565420-T-A | ** | |||||||
28722658-A-T | 26576511-A-T | ** | |||||||
28764314-C-A | 26618167-C-A | ** | |||||||
56822381-C-G | ** | ||||||||
13445557-T-G | 11289881-T-G | *** | |||||||
17889197-CT-C | 15777317-CT-C | 11×T | *** | ||||||
16647535-T-TG | 14535655-T-TG | *** | |||||||
7133086-AAAC-A | 7265045-AAAC-A | 11×AAC | *** | *** | |||||
22893370-T-TTTC | 20731484-T-TTTC | *** | |||||||
22428345-C-A | 20266459-C-A | DYZ19 | *** | ||||||
13138181-C-T | 10627667-C-T | *** | |||||||
13815607-A-T | 11694901-A-T | *** | |||||||
24935403-G-A | 22789256-G-A | g1 | *** | ||||||
14888179-A-G | 12776245-A-G | *** | |||||||
58972966-T-C | 56826819-T-C | *** | |||||||
10887943-A-T | *** | ||||||||
13489629-CCACCCA-C,CCAACC | 11333953-CCACCCA-C,CCAACC | *** | |||||||
16612636-CTTT-C | 14500756-CTTT-C | 15×T | *** | ||||||
10950494-C-A | *** | ||||||||
10950516-C-T | *** | ||||||||
7134894-CAAA-C | 7266853-CAAA-C | 13×A | *** | ||||||
17192946-A-AAT | 15081066-A-AAT | *** | |||||||
56839538-T-C | *** | ||||||||
10686523-C-T | *** | ||||||||
56826538-C-T | *** | ||||||||
2844149-GTTT-G | 2976108-GTTT-G | 16×T | *** | ||||||
19418524-TAA-T | 17306644-TAA-T | 12×A | *** | ||||||
10824222-A-C,T | *** | ||||||||
8214848-C-T | 8346807-C-T | SK2202 | *** | ||||||
14079489-A-C | 11958783-A-C | FGC81186 | *** | ||||||
7364367-GTTTT-G | 7496326-GTTTT-G | 27×T | *** | ||||||
16250655-C-CT | 14138775-C-CT | *** | |||||||
56828594-G-T | *** | ||||||||
7039997-C-A | 7171956-C-A | *** | |||||||
17461876-C-A | 15349996-C-A | *** | |||||||
11017609-C-A | *** | ||||||||
13228877-G-C | 11073201-G-C | *** | |||||||
14694519-CA-C | 12582585-CA-C | 8×A | *** | ||||||
56830301-TCCATTCCATG-T,TCCATTCCATT | *** | ||||||||
2960069-A-G | 3092028-A-G | *** | |||||||
4223246-G-A | 4355205-G-A | *** | |||||||
7020473-C-A | 7152432-C-A | *** | |||||||
9798254-C-A | 9960645-C-A | *** | |||||||
10016170-C-A | 10178561-C-A | *** | |||||||
13258834-T-C | 11103158-T-C | *** | |||||||
14449288-C-A | 12328561-C-A | *** | |||||||
15380320-G-T | 13268440-G-T | *** | |||||||
18184927-C-A | 16073047-C-A | *** | |||||||
19517425-C-A | 17405545-C-A | *** | |||||||
20841008-C-T | 18679122-C-T | P4_Gap | *** | ||||||
21177211-GT-G,GTT | 19015325-GT-G,GTT | 19×T | *** | ||||||
21235227-CAAAAAAAAA-C | 19073341-CAAAAAAAAA-C | 19×A | *** | ||||||
22551347-C-A | 20389461-C-A | *** | |||||||
56834902-C-A | *** | ||||||||
56836339-ATTCTC-A,ATTCCA | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.