Tree Position

R-M269 > L23 > Z2103 > Z2106 > Z2108 > KMS67

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
527684
28794008-G-A 26647861-G-A A*
6106166-A-G 6238125-A-G A*
6275802-G-C 6407761-G-C IR3_Dst A*
13695095-T-C 11539419-T-C A*
16109720-A-G 13997840-A-G P8_Prx A*
20727133-T-C 18565247-T-C P4_Prx A*
10627895-A-G BY29255 A*
26117629-G-T 23971482-G-T P1_Y1 A*
58979396-T-C 56833249-T-C **
13695101-G-A 11539425-G-A A*
13695081-G-T 11539405-G-T A*
19984542-C-T 17872662-C-T P5_Prx A*
26011966-G-A 23865819-G-A P1_Y1 A*
19977073-A-G 17865193-A-G P5_Prx A*
22237466-A-T 20075580-A-T DYZ19 A*
26002238-G-A 23856091-G-A P1_Y1 A*
6331681-C-T 6463640-C-T IR3_Dst A*
22456371-G-A 20294485-G-A DYZ19 A*
26033418-C-A 23887271-C-A P1_Y1 A*
23627961-G-A 21466075-G-A Y112074 YY+
23723508-G-C 21561622-G-C BY147128 +
16860701-A-G 14748821-A-G Y97514 YY+
23799355-C-A 21637469-C-A Y112344 Y+
6733744-G-A 6865703-G-A Y82411 YY+
16835380-A-T 14723500-A-T ZS6183 YY+
6868199-G-A 7000158-G-A Y82752 YY+
23989977-C-A 21843830-C-A BY46695 Y+
21413305-C-G 19251419-C-G Y106420 YY+
6677780-G-C 6809739-G-C Y82301 YY+
23989994-C-T 21843847-C-T Y112595 Y+
21651472-G-A 19489586-G-A Y107120 YY+
18709290-C-CA 16597410-C-CA 10×A+
17356044-G-A 15244164-G-A Y98904 YY+
22272106-A-C 20110220-A-C BY215317 DYZ19 +
22457502-A-C 20295616-A-C BY186015 DYZ19 +
22473693-G-T 20311807-G-T BY186017 DYZ19 +
22486741-T-G 20324855-T-G BY30043 DYZ19 +
8861152-C-T 8993111-C-T Y88212 YY+
22764151-C-T 20602265-C-T Y109685 YY+
8753085-A-C 8885044-A-C Y87909 YY+
17665282-G-A 15553402-G-A Y99867 YY+
17240167-T-C 15128287-T-C Y98569 YY+
22466733-T-C 20304847-T-C FGC15236FGC15249 DYZ19 +
22044326-T-C 19882440-T-C Y108240 YY+
17128370-C-A 15016490-C-A Y98261 YY+
13717691-C-A 11562015-C-A BY89743 +
23129410-C-T 20967524-C-T Y110718 YY+
7139865-A-G 7271824-A-G Y83435 YY+
17982482-T-C 15870602-T-C Y100872 Y+
21722131-T-C 19560245-T-C Y107319 YY+
13842091-C-A 11721385-C-A Y89777 +
23989984-T-C 21843837-T-C BY15188 Y+
9054114-T-C 9216505-T-C BY77745 Y+
18995795-T-G 16883915-T-G Y103298 YY+
13940157-A-C 11819451-A-C Z16258Z17985 Y+
19284024-C-G 17172144-C-G CTS10137 Z43775 YY+
20612662-G-A 18450776-G-A BY196803 P4_Prx +
16505855-C-T 14393975-C-T Y96524 YY+
7053220-C-CA 7185179-C-CA Y37731 8×A+
18911983-C-T 16800103-C-T Y103021 YY+
5710361-A-C 5842320-A-C BY58822 +
7453566-AGTGT-A 7585525-AGTGT-A Y19922 IR1_L 16×GT+
2723379-A-G 2855338-A-G Y81298 YY+
17426011-CCTTTTCTTTTCTTTT-C 15314131-CCTTTTCTTTTCTTTT-C 11×CTTTT+
2833962-A-G 2965921-A-G Y81575 YY+
21240418-T-A 19078532-T-A BY131372 YY+
15375147-G-A 13263267-G-A Y93652 YY+
19239050-TTATCTATC-T 17127170-TTATCTATC-T 12×TATC+
28785062-T-G 26638915-T-G *
23869694-A-AATGTAT 21707808-A-AATGTAT 5×ATGTAT*
13848945-C-CGGAAT 11728239-C-CGGAAT 8×GGAAT*
17749754-G-GCA 15637874-G-GCA *
22226012-C-A 20064126-C-A DYZ19 *
13452332-G-GATTCCATTCC 11296656-G-GATTCCATTCC 12×ATTCC*
22335075-C-G 20173189-C-G DYZ19 *
18414381-AGAAGGAAG-A 16302501-AGAAGGAAG-A P6_Gap 15×GAAG*
15206182-TAA-T 13094268-TAA-T 14×A*
13489616-CC-C,CCCCGTCCT 11333940-CC-C,CCCCGTCCT *
13818192-TGAATGGAATG-T 11697486-TGAATGGAATG-T 10×GAATG*
22432298-G-T 20270412-G-T BY7444 DYZ19 *
28785058-A-G 26638911-A-G *
16809086-C-CAGATAGAT 14697206-C-CAGATAGAT 11×AGAT*
10876924-A-C **
10888669-A-G **
10893972-A-C **
13271640-A-C 11115964-A-C **
10894726-A-T **
13271701-G-A 11116025-G-A **
10860920-G-T **
10878210-C-T **
10996178-T-C **
13249279-C-T 11093603-C-T **
10952884-A-T **
10958422-G-A **
13454418-G-A 11298742-G-A **
11005165-C-T **
11013063-C-A FT393658 **
11013556-G-A **
10952931-A-C **
10952927-C-G **
11013585-G-C **
10952849-C-A **
13195786-C-A 11040110-C-A **
11013593-T-C **
11037111-T-C **
10952840-C-G **
10949880-A-C **
10926696-T-TGCACTCCGAA **
10898306-T-A **
11037130-CTTCTCTCCAT-C **
10895647-T-A **
11037182-C-A **
14656153-AC-A 12544218-AC-A **
11666126-T-G **
13454427-A-G 11298751-A-G **
14432101-G-T 12311374-G-T **
14076700-C-A 11955994-C-A **
14229943-A-C 12109237-A-C **
14252437-A-T 12131731-A-T **
14253169-G-A 12132463-G-A **
14285717-C-A 12165011-C-A **
14314178-A-G 12193472-A-G **
14339367-T-C 12218662-T-C **
14431103-G-C 12310376-G-C **
14431104-A-T 12310377-A-T **
14493457-G-A 12381654-G-A **
13996078-C-T 11875372-C-T FT133799 **
14502411-T-C 12390616-T-C **
14550628-C-A 12438829-C-A **
14567009-T-C 12455209-T-C **
14571250-G-T 12459450-G-T **
14585660-C-G 12473860-C-G **
14585669-A-C 12473869-A-C **
14605770-T-A 12493972-T-A **
14718555-A-T 12606623-A-T **
14785546-T-G 12673616-T-G **
13999234-C-A 11878528-C-A **
13976641-G-T 11855935-G-T **
13454437-T-A 11298761-T-A **
11658670-C-G **
13468281-T-C 11312605-T-C **
13482089-TA-T 11326413-TA-T **
13484555-A-C 11328879-A-C **
13521140-C-A 11365464-C-A **
13523563-C-T 11367887-C-T **
13566610-C-A 11410934-C-A **
13631550-G-T 11475874-G-T **
13705463-T-C 11549787-T-C **
13726105-G-T 11570429-G-T **
10829008-C-A **
13976610-T-C 11855904-T-C **
11672780-T-A **
13854408-G-T 11733702-G-T FT133751 **
13856292-G-T 11735586-G-T **
13857808-C-A 11737102-C-A **
13883046-G-C 11762340-G-C **
13883118-A-G 11762412-A-G **
13919229-T-A 11798523-T-A **
13921651-A-C 11800945-A-C **
13946287-A-G 11825581-A-G **
13976576-A-T 11855870-A-T **
10840023-A-C **
10011188-A-C 10173579-A-C **
10802222-A-AATTCAGAGCT **
6918316-C-G 7050275-C-G **
5993790-T-C 6125749-T-C **
6124396-A-G 6256355-A-G **
6238666-T-TGC 6370625-T-TGC IR3_Dst **
6252933-C-T 6384892-C-T IR3_Dst **
6354005-C-A 6485964-C-A **
6367484-A-T 6499443-A-T **
6666369-A-G 6798328-A-G **
6856703-A-C 6988662-A-C **
6918312-G-C 7050271-G-C **
6930780-T-G 7062739-T-G **
5854857-T-C 5986816-T-C **
6967863-G-T 7099822-G-T **
6978108-A-T 7110067-A-T **
7019126-C-A 7151085-C-A Y83158 **
7043643-T-C 7175602-T-C **
7081320-G-T 7213279-G-T **
7094261-T-G 7226220-T-G **
7102316-A-G 7234275-A-G **
7201526-G-C 7333485-G-C **
7299124-ACACATACACC-A 7431083-ACACATACACC-A **
7377579-A-G 7509538-A-G FT178998 **
5867227-C-A 5999186-C-A **
5770958-T-C 5902917-T-C **
7385841-T-A 7517800-T-A **
5119292-A-G 5251251-A-G **
4701376-G-T 4833335-G-T **
4788860-G-C 4920819-G-C **
4788879-A-C 4920838-A-C **
4788888-G-C 4920847-G-C **
4788920-T-C 4920879-T-C **
4788967-T-A 4920926-T-A **
4898528-T-A 5030487-T-A **
4926174-T-A 5058133-T-A **
4930471-A-T 5062430-A-T **
5178438-C-A 5310397-C-A **
5770946-A-T 5902905-A-T **
5178441-T-A 5310400-T-A **
5212028-C-T 5343987-C-T **
5212045-T-G 5344004-T-G **
5216454-A-T 5348413-A-T **
5220354-G-A 5352313-G-A **
5277901-G-A 5409860-G-A **
5508696-C-A 5640655-C-A **
5669800-A-C 5801759-A-C **
5760690-C-A 5892649-C-A **
5770925-C-A 5902884-C-A **
7377607-C-A 7509566-C-A **
7704891-T-C 7836850-T-C **
10802219-T-A **
10753586-T-TGACAC **
10011251-G-T 10173642-G-T **
10040211-AT-A 10202602-AT-A **
10651907-TCC-T **
10658225-TCCATTACATTA-T **
10671495-C-A **
10677481-C-T **
10687324-A-C **
10746869-A-G **
10751177-T-G **
10754718-T-C **
15047945-T-C 12936036-T-C **
10754996-C-CGGATT **
10755008-A-T **
10755017-C-T **
10782877-C-G **
10789736-G-T **
10794935-A-C **
10802169-T-C **
10802188-C-T **
10802197-AT-A **
10802216-C-A **
10011211-A-C 10173602-A-C **
10011114-A-C 10173505-A-C **
7709656-T-C 7841615-T-C **
9381916-T-C 9544307-T-C **
7723941-C-G 7855900-C-G **
7861617-T-C 7993576-T-C **
7897860-T-A 8029819-T-A **
7898778-G-A 8030737-G-A Y85294 **
7984462-A-C 8116421-A-C **
8095272-A-G 8227231-A-G **
8855524-A-C 8987483-A-C **
9056798-T-G **
9331581-C-A 9493972-C-A **
9499161-A-G 9661552-A-G **
9990128-G-C 10152519-G-C **
9508020-C-T 9670411-C-T **
9508023-A-AAG 9670414-A-AAG **
9678342-T-A 9840733-T-A IR3_Prx **
9773486-G-T 9935877-G-T **
9773487-G-C 9935878-G-C **
9873777-C-A 10036168-C-A **
9887072-C-G 10049463-C-G **
9887076-C-G 10049467-C-G **
9887081-T-G 10049472-T-G **
9980464-C-G 10142855-C-G **
14806025-G-A 12694096-G-A **
16590720-A-G 14478840-A-G **
15128141-C-CT 13016228-C-CT **
22995360-G-T 20833474-G-T **
22333843-T-A 20171957-T-A DYZ19 **
22650875-C-A 20488989-C-A **
22659604-T-C 20497718-T-C **
22916798-AC-A 20754912-AC-A **
22954819-T-C 20792933-T-C **
22995046-G-A 20833160-G-A **
22995131-C-A 20833245-C-A **
22995355-A-T 20833469-A-T **
22995356-T-G 20833470-T-G **
22995374-T-A 20833488-T-A **
22205393-C-A 20043507-C-A **
23004810-G-A 20842924-G-A **
23009503-T-C 20847617-T-C **
23059634-C-A 20897748-C-A **
23061254-A-T 20899368-A-T **
23065043-C-A 20903157-C-A **
23101292-C-A 20939406-C-A **
23181427-G-T 21019541-G-T **
23181444-C-A 21019558-C-A **
23181445-T-C 21019559-T-C **
22212023-C-A 20050137-C-A **
22166647-A-T 20004761-A-T **
23200780-A-G 21038894-A-G **
21482790-A-T 19320904-A-T **
21148563-T-A 18986677-T-A **
21148585-ATCTC-A 18986699-ATCTC-A **
21248067-C-A 19086181-C-A **
21263464-C-A 19101578-C-A **
21306584-T-C 19144698-T-C **
21371682-C-A 19209796-C-A **
21435073-G-C 19273187-G-C **
21457955-A-G 19296069-A-G **
21476924-T-A 19315038-T-A **
21534879-A-G 19372993-A-G **
22149811-C-A 19987925-C-A **
21588732-G-T 19426846-G-T **
21824810-C-A 19662924-C-A **
21850722-G-T 19688836-G-T **
21862947-C-G 19701061-C-G **
21932652-C-A 19770766-C-A **
22027914-T-A 19866028-T-A **
22122169-G-A 19960283-G-A **
22124205-T-C 19962319-T-C **
22124460-T-G 19962574-T-G **
22124501-C-A 19962615-C-A **
23199620-A-G 21037734-A-G Y110973 **
23253254-T-C 21091368-T-C Y111099 **
20695284-G-A 18533398-G-A P4_Prx **
28482990-T-G 26336843-T-G **
27596081-G-T 25449934-G-T P1_Y2 **
27791783-T-C 25645636-T-C P1_Y2 **
27883199-C-T 25737052-C-T P1_Y2 **
27936787-C-A 25790640-C-A P1_Y2 **
27981797-C-A 25835650-C-A P1_Y2 **
27996128-A-AAC 25849981-A-AAC P1_Y2 **
27996142-G-T 25849995-G-T P1_Y2 **
28027469-T-C 25881322-T-C P1_Y2 **
28453897-A-AG 26307750-A-AG P1_gr2 **
28482991-G-A 26336844-G-A **
26699219-T-C 24553072-T-C P1_g2 **
28506054-G-T 26359907-G-T **
28534540-A-G 26388393-A-G **
28623196-A-T 26477049-A-T **
28649363-G-T 26503216-G-T **
56833303-T-A **
56833304-T-G **
56833328-C-CACCAT **
56833352-A-C **
56833363-C-A **
56834953-T-A **
27585952-A-T 25439805-A-T P1_Y2 **
26262460-T-A 24116313-T-A P1_Y1 8×TA**
23569050-C-T 21407164-C-T **
25934376-A-AAG 23788229-A-AAG P1_Y1 **
23570280-T-A 21408394-T-A **
23779843-C-A 21617957-C-A **
23824961-AAT-A 21663075-AAT-A **
23849698-T-C 21687812-T-C Y30760 **
23849699-T-C 21687813-T-C **
24353289-T-TCC 22207142-T-TCC P3_t1 **
24405878-C-G 22259731-C-G **
24614270-G-C 22468123-G-C P3_t2 **
24614289-T-A 22468142-T-A P3_t2 **
25934408-T-A 23788261-T-A P1_Y1 **
26142739-C-A 23996592-C-A P1_Y1 **
25934411-G-A 23788264-G-A P1_Y1 **
25934421-T-G 23788274-T-G P1_Y1 **
25945017-T-A 23798870-T-A P1_Y1 **
25945059-A-C 23798912-A-C P1_Y1 **
26096337-GC-G 23950190-GC-G P1_Y1 **
26096343-C-A 23950196-C-A P1_Y1 **
26096351-G-A 23950204-G-A P1_Y1 **
26096354-T-TA 23950207-T-TA P1_Y1 **
26101378-A-G 23955231-A-G P1_Y1 **
26142646-A-T 23996499-A-T P1_Y1 **
20755550-A-T 18593664-A-T P4_Prx **
20695266-A-G 18533380-A-G P4_Prx **
15323492-T-A 13211610-T-A **
16930260-G-T 14818380-G-T **
16531069-G-C 14419189-G-C **
16531073-G-C 14419193-G-C **
4672191-C-A 4804150-C-A **
16620577-G-T 14508697-G-T **
16656770-A-G 14544890-A-G **
16705572-G-T 14593692-G-T **
16915098-A-C 14803218-A-C **
16915131-A-C 14803251-A-C **
16926531-C-A 14814651-C-A **
16933009-C-A 14821129-C-A **
16445616-A-G 14333736-A-G **
16938648-C-T 14826768-C-T **
16943532-C-A 14831652-C-A **
16981180-GCATTTAGAGA-G 14869300-GCATTTAGAGA-G **
17048051-T-G 14936171-T-G **
17087285-T-C 14975405-T-C **
17095261-C-A 14983381-C-A **
17157715-C-A 15045835-C-A **
17158994-TGAG-T 15047114-TGAG-T **
17367732-G-C 15255852-G-C **
16458258-A-T 14346378-A-T **
16405469-C-A 14293589-C-A **
17375714-G-T 15263834-G-T **
15732140-T-G 13620260-T-G **
15358696-T-A 13246815-T-A **
15364566-C-A 13252686-C-A **
15396313-A-G 13284433-A-G **
15397443-G-T 13285563-G-T **
15400197-T-A 13288317-T-A **
15402843-C-T 13290963-C-T **
15495194-T-C 13383314-T-C **
15556728-C-A 13444848-C-A **
15731348-A-C 13619468-A-C **
15770651-G-T 13658771-G-T **
16320398-A-G 14208518-A-G **
15775218-G-T 13663338-G-T **
15940305-TCAAAA-T 13828425-TCAAAA-T **
15952712-G-T 13840832-G-T **
15969796-GA-G 13857916-GA-G **
15971573-T-A 13859693-T-A **
16063870-C-A 13951990-C-A **
16072949-C-A 13961069-C-A **
16232489-G-T 14120609-G-T **
16278423-C-A 14166543-C-A **
16296827-T-C 14184947-T-C **
17367775-A-T 15255895-A-T **
17455885-A-C 15344005-A-C **
20695248-T-G 18533362-T-G P4_Prx **
19557273-C-A 17445393-C-A **
19125654-C-A 17013774-C-A **
19127678-A-C 17015798-A-C **
19168605-A-T 17056725-A-T **
19168625-T-G 17056745-T-G **
19168642-T-A 17056762-T-A **
19293768-CTCAA-C 17181888-CTCAA-C **
19361232-G-C 17249352-G-C **
19377089-A-G 17265209-A-G **
19444246-T-A 17332366-T-A **
19575935-CTCT-C 17464055-CTCT-C P5_Prx **
19053179-G-A 16941299-G-A **
19747686-T-C 17635806-T-C P5_Prx **
19815544-A-AT 17703664-A-AT P5_Prx **
19892868-GTTTT-G 17780988-GTTTT-G P5_Prx 31×T**
20440447-G-A 18278561-G-A P5_Dst **
20593056-A-ACAC 18431170-A-ACAC P5_Dst **
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13421185-T-C 11265509-T-C ***
10999859-G-C,T ***
22737231-CAAAAA-C,CAAA 20575345-CAAAAA-C,CAAA 18×A***
19565634-TAA-T 17453754-TAA-T 14×A***
2658789-TAA-T 2790748-TAA-T 13×A***
23981934-CTTT-C 21835787-CTTT-C 14×T***
19479688-A-AGT 17367808-A-AGT 20×GT***
9398111-C-A 9560502-C-A ***
21608305-G-T 19446419-G-T ***
14784735-G-T 12672805-G-T ***
10949893-C-A ***
17678645-TTTG-T 15566765-TTTG-T ***
9013249-C-A 9175640-C-A ***
23633400-A-G 21471514-A-G ***
15882073-TC-A 13770193-TC-A ***
28790628-A-T 26644481-A-T ***
13489117-C-T 11333441-C-T ***
21691070-A-T 19529184-A-T ***
17189351-C-A 15077471-C-A ***
10807280-T-C ***
10657388-T-C ***
21662148-TAA-T,TA 19500262-TAA-T,TA 14×A***
7760218-A-G 7892177-A-G ***
15479963-TG-G,T 13368083-TG-G,T ***
8746989-C-A 8878948-C-A 14×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 527684969742378900537775220
Used in age calculations969742378900537775220
Counts of SNPs2932
Variant counts last updated 2022-07-30 03:29:55.



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